Wall clock time and date at job start Fri Apr 10 2020 17:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47063 * 2 1 4 4 C 1.52998 * 109.47697 * 120.00285 * 2 1 3 5 5 N 1.46899 * 109.47648 * 175.95087 * 4 2 1 6 6 C 1.46952 * 111.00121 * 199.65000 * 5 4 2 7 7 C 1.53051 * 109.36177 * 176.81331 * 6 5 4 8 8 N 1.46952 * 109.36468 * 58.40475 * 7 6 5 9 9 C 1.46905 * 111.00000 * 176.81337 * 8 7 6 10 10 C 1.46952 * 110.87882 * 300.67519 * 8 7 6 11 11 C 1.46962 * 110.99802 * 75.84961 * 5 4 2 12 12 N 1.46903 * 109.46931 * 240.00100 * 2 1 3 13 13 C 1.46900 * 110.99740 * 83.60322 * 12 2 1 14 14 C 1.53007 * 109.46913 * 179.97438 * 13 12 2 15 15 H 1.08997 * 109.46946 * 54.99882 * 14 13 12 16 16 C 1.47200 * 109.47045 * 294.99553 * 14 13 12 17 17 N 4.90944 * 135.72347 * 248.64985 * 2 1 3 18 18 C 1.53006 * 109.46831 * 174.99849 * 14 13 12 19 19 C 1.50697 * 109.46807 * 184.99974 * 18 14 13 20 20 H 1.08000 * 120.00213 * 0.02562 * 19 18 14 21 21 C 1.37877 * 120.00142 * 180.02562 * 19 18 14 22 22 N 1.31512 * 119.99866 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00221 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47570 * 89.99829 * 23 21 19 25 25 H 1.48504 * 109.46961 * 210.00012 * 23 21 19 26 26 H 1.48497 * 109.47091 * 329.99591 * 23 21 19 27 27 H 1.08996 * 109.46649 * 299.99370 * 1 2 3 28 28 H 1.08991 * 109.47399 * 60.00032 * 1 2 3 29 29 H 1.09004 * 109.46572 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47022 * 55.94859 * 4 2 1 31 31 H 1.09007 * 109.46943 * 295.95283 * 4 2 1 32 32 H 1.09002 * 109.48878 * 296.77994 * 6 5 4 33 33 H 1.08994 * 109.49266 * 56.84543 * 6 5 4 34 34 H 1.08991 * 109.49299 * 298.43260 * 7 6 5 35 35 H 1.09009 * 109.50624 * 178.37923 * 7 6 5 36 36 H 1.08999 * 109.47212 * 183.80067 * 9 8 7 37 37 H 1.09004 * 109.46634 * 303.79279 * 9 8 7 38 38 H 1.08997 * 109.47443 * 63.79498 * 9 8 7 39 39 H 1.08999 * 109.49224 * 299.35255 * 10 8 7 40 40 H 1.09000 * 109.50605 * 179.30234 * 10 8 7 41 41 H 1.08996 * 109.48867 * 303.15704 * 11 5 4 42 42 H 1.09002 * 109.48707 * 63.20171 * 11 5 4 43 43 H 1.00908 * 111.00116 * 207.55052 * 12 2 1 44 44 H 1.08999 * 109.47325 * 299.99468 * 13 12 2 45 45 H 1.09001 * 109.47715 * 60.00219 * 13 12 2 46 46 H 1.08993 * 109.47199 * 304.99673 * 18 14 13 47 47 H 1.09002 * 109.47328 * 65.00174 * 18 14 13 48 48 H 0.96996 * 120.00272 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5058 -0.8065 1.2012 6 6 4.0016 -1.8606 2.0971 7 6 5.5219 -1.9704 1.9588 8 7 6.1356 -0.6754 2.2839 9 6 7.6014 -0.7605 2.2359 10 6 5.6398 0.3787 1.3880 11 6 4.1196 0.4886 1.5262 12 7 2.0196 -0.6925 -1.1995 13 6 2.0510 0.2142 -2.3548 14 6 2.5657 -0.5410 -3.5820 15 1 1.9560 -1.4299 -3.7435 16 6 3.9655 -0.9393 -3.3615 17 7 5.0450 -1.2478 -3.1922 18 6 2.4811 0.3659 -4.8114 19 6 2.8714 -0.4153 -6.0395 20 1 3.1514 -1.4547 -5.9521 21 6 2.8712 0.1969 -7.2749 22 7 2.5297 1.4625 -7.3816 23 14 3.3543 -0.7715 -8.7974 24 1 2.1464 -1.4032 -9.3864 25 1 3.9691 0.1440 -9.7920 26 1 4.3319 -1.8253 -8.4242 27 1 -0.3632 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.6188 -1.7258 1.2862 31 1 1.7372 -0.1673 2.1377 32 1 3.7472 -1.6116 3.1274 33 1 3.5424 -2.8119 1.8286 34 1 5.7750 -2.2461 0.9352 35 1 5.8956 -2.7320 2.6435 36 1 8.0311 0.1921 2.5457 37 1 7.9417 -1.5483 2.9080 38 1 7.9190 -0.9886 1.2185 39 1 5.8943 0.1298 0.3577 40 1 6.0991 1.3301 1.6562 41 1 3.7463 1.2500 0.8414 42 1 3.8662 0.7645 2.5498 43 1 2.9276 -1.1011 -1.0358 44 1 1.0457 0.5864 -2.5521 45 1 2.7134 1.0530 -2.1407 46 1 1.4607 0.7324 -4.9230 47 1 3.1589 1.2105 -4.6873 48 1 2.5292 1.8931 -8.2507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326600520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:35 Heat of formation + Delta-G solvation = 6.617193 kcal Electronic energy + Delta-G solvation = -24361.484084 eV Core-core repulsion = 21064.003523 eV Total energy + Delta-G solvation = -3297.480561 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.212 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.50254 -38.99160 -37.59025 -35.97609 -35.33255 -33.76338 -31.98309 -31.20353 -29.50499 -27.96438 -26.31436 -24.76274 -24.44769 -23.83954 -23.45246 -21.15039 -20.73689 -18.54202 -18.22919 -17.30772 -16.94568 -16.69501 -16.40506 -16.10742 -15.90839 -15.65265 -15.39891 -15.13416 -14.80342 -14.46161 -14.36217 -13.97844 -13.81404 -13.52785 -13.46153 -13.24924 -13.09311 -13.00441 -12.83056 -12.72807 -12.58883 -12.48281 -12.40575 -12.31132 -12.24507 -12.08937 -11.94728 -11.70911 -11.41356 -11.33959 -11.09517 -10.54899 -9.52358 -9.34379 -9.20678 -8.19438 -6.27741 1.40053 1.41377 1.50935 1.97894 2.00618 2.41438 2.80983 2.90624 3.15550 3.28417 3.31323 3.82571 3.89975 4.01736 4.14067 4.18500 4.27487 4.36041 4.37229 4.43537 4.45955 4.54187 4.57432 4.58564 4.66954 4.74814 4.77118 4.83751 4.87775 4.91337 4.91716 4.96040 4.96828 5.02598 5.13451 5.23238 5.46905 5.51610 5.63036 5.79363 5.87901 5.88732 6.07024 6.10931 6.17105 6.28632 6.56688 6.78412 6.87897 7.40707 8.91574 Molecular weight = 294.21amu Principal moments of inertia in cm(-1) A = 0.016911 B = 0.003590 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.302545 B = 7798.539454 C = 8855.168982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.035 0.965 4 C 0.060 3.940 5 N -0.559 5.559 6 C 0.065 3.935 7 C 0.054 3.946 8 N -0.546 5.546 9 C 0.024 3.976 10 C 0.056 3.944 11 C 0.063 3.937 12 N -0.682 5.682 13 C 0.082 3.918 14 C 0.019 3.981 15 H 0.120 0.880 16 C 0.252 3.748 17 N -0.504 5.504 18 C 0.040 3.960 19 C -0.539 4.539 20 H 0.053 0.947 21 C 0.012 3.988 22 N -0.923 5.923 23 Si 0.949 3.051 24 H -0.266 1.266 25 H -0.284 1.284 26 H -0.277 1.277 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.019 0.981 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.013 0.987 39 H 0.014 0.986 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.345 0.655 44 H 0.100 0.900 45 H 0.022 0.978 46 H 0.036 0.964 47 H -0.002 1.002 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.198 -3.050 23.033 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.053 0.947 4 C -0.068 4.068 5 N -0.284 5.284 6 C -0.063 4.063 7 C -0.074 4.074 8 N -0.271 5.271 9 C -0.124 4.124 10 C -0.072 4.072 11 C -0.065 4.065 12 N -0.315 5.315 13 C -0.049 4.049 14 C -0.003 4.003 15 H 0.138 0.862 16 C -0.065 4.065 17 N -0.182 5.182 18 C 0.002 3.998 19 C -0.577 4.577 20 H 0.071 0.929 21 C -0.187 4.187 22 N -0.563 5.563 23 Si 0.775 3.225 24 H -0.191 1.191 25 H -0.209 1.209 26 H -0.202 1.202 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.037 0.963 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.165 0.835 44 H 0.119 0.881 45 H 0.041 0.959 46 H 0.054 0.946 47 H 0.016 0.984 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.196 -3.651 23.029 23.317 hybrid contribution 0.987 0.485 -1.293 1.698 sum 0.792 -3.166 21.736 21.979 Atomic orbital electron populations 1.21738 0.93067 1.02613 1.01902 1.21551 0.96313 0.95287 0.89073 0.94705 1.22278 0.86051 1.01915 0.96522 1.61954 1.07061 1.05915 1.53474 1.22122 0.93990 0.95290 0.94869 1.22225 0.94746 0.91329 0.99083 1.62282 1.07208 1.05777 1.51795 1.22405 0.86661 1.03558 0.99784 1.22148 0.95493 0.95861 0.93704 1.22104 0.93257 0.91277 0.99840 1.60644 1.33380 1.33691 1.03812 1.21898 1.01477 0.92901 0.88618 1.19224 0.82655 1.01474 0.96925 0.86187 1.29612 0.95404 0.91181 0.90259 1.80975 1.13636 1.11545 1.12005 1.18965 0.97604 0.93460 0.89811 1.21549 1.45592 0.97391 0.93207 0.92912 1.25712 0.95251 0.95757 1.01995 1.70032 1.49214 1.11805 1.25270 0.85682 0.78769 0.78535 0.79517 1.19061 1.20926 1.20177 0.91184 0.92800 0.91874 0.89507 0.92538 0.93282 0.89358 0.96264 0.88629 0.90416 0.89898 0.96833 0.96769 0.89364 0.90916 0.93140 0.83547 0.88134 0.95932 0.94605 0.98389 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.40 71.98 0.68 -1.71 16 2 C 0.09 1.83 2.66 44.91 0.12 1.95 16 3 H 0.03 0.78 6.71 -2.38 -0.02 0.76 16 4 C 0.06 1.08 4.63 86.30 0.40 1.48 16 5 N -0.56 -11.70 3.51 -895.73 -3.14 -14.84 16 6 C 0.07 1.20 5.56 86.31 0.48 1.68 16 7 C 0.05 1.10 5.62 86.31 0.49 1.58 16 8 N -0.55 -11.34 4.97 -921.96 -4.58 -15.92 16 9 C 0.02 0.43 9.60 127.69 1.23 1.66 16 10 C 0.06 1.27 5.62 86.31 0.49 1.76 16 11 C 0.06 1.31 5.43 86.31 0.47 1.78 16 12 N -0.68 -18.12 6.30 -491.55 -3.10 -21.22 16 13 C 0.08 2.47 4.92 86.31 0.42 2.89 16 14 C 0.02 0.72 2.42 -12.60 -0.03 0.69 16 15 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 16 C 0.25 10.57 12.97 89.45 1.16 11.73 16 17 N -0.50 -22.79 18.53 20.00 0.37 -22.42 16 18 C 0.04 1.92 4.42 29.85 0.13 2.05 16 19 C -0.54 -29.22 8.60 25.60 0.22 -29.00 16 20 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 21 C 0.01 0.65 5.46 84.65 0.46 1.12 16 22 N -0.92 -53.65 13.29 21.45 0.28 -53.36 16 23 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 1.04 7.37 -2.39 -0.02 1.02 16 29 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.09 1.50 7.84 -2.39 -0.02 1.48 16 31 H 0.06 0.87 7.99 -2.38 -0.02 0.85 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.49 8.00 -2.39 -0.02 1.47 16 34 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.10 1.56 8.13 -2.38 -0.02 1.54 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.22 8.13 -2.39 -0.02 1.20 16 38 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.57 6.87 -2.39 -0.02 1.56 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.34 10.31 6.49 -89.69 -0.58 9.73 16 44 H 0.10 2.80 7.34 -2.39 -0.02 2.78 16 45 H 0.02 0.72 8.06 -2.39 -0.02 0.70 16 46 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -62.94 381.31 -1.10 -64.04 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.33 Total: 17.98 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 6.71 Total: -0.33 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -10.17 Total: -127.76 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -62.94 -1.10 -64.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326600520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.657 kcal (2) G-P(sol) polarization free energy of solvation -62.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds