Wall clock time and date at job start Fri Apr 10 2020 17:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47340 * 2 1 4 4 C 1.52995 * 109.47318 * 240.00108 * 2 1 3 5 5 N 1.46899 * 109.47529 * 185.00158 * 4 2 1 6 6 C 1.46958 * 110.99697 * 293.79954 * 5 4 2 7 7 C 1.53049 * 109.36275 * 176.80896 * 6 5 4 8 8 N 1.46961 * 109.36823 * 58.40181 * 7 6 5 9 9 C 1.46893 * 111.00354 * 176.81114 * 8 7 6 10 10 C 1.46956 * 110.87520 * 300.67985 * 8 7 6 11 11 C 1.46954 * 111.00310 * 169.99619 * 5 4 2 12 12 N 1.46904 * 109.47162 * 119.99839 * 2 1 3 13 13 C 1.46896 * 111.00016 * 274.99941 * 12 2 1 14 14 C 1.53002 * 109.47181 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.47070 * 305.00230 * 14 13 12 16 16 C 1.47201 * 109.46938 * 65.00082 * 14 13 12 17 17 N 4.90938 * 135.91301 * 112.22786 * 2 1 3 18 18 C 1.53000 * 109.47233 * 184.99855 * 14 13 12 19 19 C 1.50698 * 109.46984 * 175.00062 * 18 14 13 20 20 H 1.08008 * 120.00253 * 0.02562 * 19 18 14 21 21 C 1.37881 * 120.00032 * 180.02562 * 19 18 14 22 22 N 1.31517 * 119.99980 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99806 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46754 * 90.00399 * 23 21 19 25 25 H 1.48503 * 109.46996 * 209.99720 * 23 21 19 26 26 H 1.48501 * 109.47356 * 330.00401 * 23 21 19 27 27 H 1.08998 * 109.47082 * 59.99705 * 1 2 3 28 28 H 1.08997 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46757 * 300.00342 * 1 2 3 30 30 H 1.09003 * 109.46869 * 305.00234 * 4 2 1 31 31 H 1.09000 * 109.47397 * 64.99774 * 4 2 1 32 32 H 1.08998 * 109.49053 * 296.77159 * 6 5 4 33 33 H 1.08999 * 109.49132 * 56.84234 * 6 5 4 34 34 H 1.09001 * 109.49286 * 298.43544 * 7 6 5 35 35 H 1.09001 * 109.50846 * 178.37937 * 7 6 5 36 36 H 1.09004 * 109.46954 * 183.79774 * 9 8 7 37 37 H 1.08994 * 109.47434 * 303.79602 * 9 8 7 38 38 H 1.09005 * 109.47200 * 63.80156 * 9 8 7 39 39 H 1.08996 * 109.49286 * 299.34835 * 10 8 7 40 40 H 1.09000 * 109.50944 * 179.29389 * 10 8 7 41 41 H 1.08994 * 109.49041 * 303.15762 * 11 5 4 42 42 H 1.09000 * 109.48781 * 63.20300 * 11 5 4 43 43 H 1.00903 * 111.00052 * 151.04487 * 12 2 1 44 44 H 1.09008 * 109.47165 * 59.99956 * 13 12 2 45 45 H 1.08997 * 109.47437 * 299.99850 * 13 12 2 46 46 H 1.08990 * 109.47170 * 295.00238 * 18 14 13 47 47 H 1.09001 * 109.46952 * 55.00315 * 18 14 13 48 48 H 0.97004 * 119.99775 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5040 -0.8267 -1.1904 6 6 4.1314 0.4995 -1.2756 7 6 5.6480 0.3537 -1.1311 8 7 6.1550 -0.5344 -2.1866 9 6 7.6190 -0.6398 -2.1277 10 6 5.5276 -1.8605 -2.1013 11 6 4.0109 -1.7148 -2.2458 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5951 -0.5331 3.5745 15 1 1.9691 -1.4080 3.7501 16 6 3.9839 -0.9621 3.3420 17 7 5.0563 -1.2921 3.1619 18 6 2.5428 0.3851 4.7972 19 6 2.9306 -0.3941 6.0275 20 1 3.1890 -1.4396 5.9454 21 6 2.9557 0.2277 7.2579 22 7 3.2946 -0.4522 8.3314 23 14 2.5095 2.0360 7.3997 24 1 1.0501 2.1684 7.6399 25 1 3.2545 2.6423 8.5323 26 1 2.8692 2.7350 6.1398 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6053 -1.7198 -1.2951 31 1 1.7517 -0.1583 -2.1370 32 1 3.8998 0.9500 -2.2408 33 1 3.7493 1.1346 -0.4764 34 1 5.8811 -0.0717 -0.1550 35 1 6.1182 1.3328 -1.2228 36 1 7.9732 -1.2482 -2.9600 37 1 8.0579 0.3558 -2.1929 38 1 7.9122 -1.1053 -1.1867 39 1 5.7593 -2.3111 -1.1362 40 1 5.9096 -2.4960 -2.9003 41 1 3.5411 -2.6939 -2.1539 42 1 3.7776 -1.2896 -3.2220 43 1 2.9173 -1.1205 1.0288 44 1 1.0870 0.6164 2.5525 45 1 2.7589 1.0462 2.1182 46 1 3.2364 1.2143 4.6587 47 1 1.5314 0.7735 4.9170 48 1 3.3118 -0.0149 9.1971 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326600561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:52 Heat of formation + Delta-G solvation = 31.527372 kcal Electronic energy + Delta-G solvation = -24483.324901 eV Core-core repulsion = 21186.924526 eV Total energy + Delta-G solvation = -3296.400375 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 294.212 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.71929 -37.81292 -36.37855 -34.75711 -33.63960 -32.18020 -31.16121 -30.16279 -28.72599 -26.66127 -25.46474 -23.95351 -23.33539 -22.56194 -21.51612 -20.33599 -19.81618 -16.91100 -16.79944 -16.47786 -15.97575 -15.59186 -15.28340 -15.13031 -14.78879 -14.59604 -14.36313 -13.91215 -13.54624 -13.14172 -12.87125 -12.75545 -12.69027 -12.52508 -12.36718 -12.17845 -12.07155 -11.86528 -11.75645 -11.64647 -11.45953 -11.38123 -11.30364 -11.08089 -10.96037 -10.75152 -10.54344 -10.37910 -9.89585 -9.71112 -9.29420 -8.68337 -8.59527 -8.50322 -8.21183 -6.08471 -4.08662 3.27154 3.35745 3.36814 3.58574 3.62023 3.66763 3.70618 4.29316 4.40120 4.62292 4.67154 4.78571 4.80124 4.97781 5.07142 5.14753 5.16057 5.21739 5.26292 5.28901 5.33378 5.34695 5.41243 5.54150 5.55969 5.63312 5.63832 5.67685 5.70082 5.72973 5.77907 5.85319 5.97506 6.07122 6.25337 6.28554 6.42537 6.67187 6.70279 6.87934 6.88461 6.96813 7.15823 7.23878 7.66704 7.67942 8.41020 8.47299 8.95597 9.51595 11.04736 Molecular weight = 294.21amu Principal moments of inertia in cm(-1) A = 0.016806 B = 0.003798 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.696008 B = 7370.209425 C = 8296.232972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.041 0.959 4 C 0.053 3.947 5 N -0.541 5.541 6 C 0.056 3.944 7 C 0.054 3.946 8 N -0.545 5.545 9 C 0.024 3.976 10 C 0.054 3.946 11 C 0.062 3.938 12 N -0.683 5.683 13 C 0.066 3.934 14 C 0.018 3.982 15 H 0.115 0.885 16 C 0.240 3.760 17 N -0.468 5.468 18 C -0.004 4.004 19 C -0.526 4.526 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.898 5.898 23 Si 0.877 3.123 24 H -0.274 1.274 25 H -0.288 1.288 26 H -0.265 1.265 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.029 0.971 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.355 0.645 44 H 0.087 0.913 45 H 0.030 0.970 46 H 0.022 0.978 47 H 0.034 0.966 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 2.064 -23.959 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 H 0.059 0.941 4 C -0.075 4.075 5 N -0.266 5.266 6 C -0.072 4.072 7 C -0.074 4.074 8 N -0.270 5.270 9 C -0.124 4.124 10 C -0.074 4.074 11 C -0.066 4.066 12 N -0.317 5.317 13 C -0.064 4.064 14 C -0.004 4.004 15 H 0.132 0.868 16 C -0.077 4.077 17 N -0.145 5.145 18 C -0.043 4.043 19 C -0.564 4.564 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.536 5.536 23 Si 0.704 3.296 24 H -0.200 1.200 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.177 0.823 44 H 0.105 0.895 45 H 0.048 0.952 46 H 0.040 0.960 47 H 0.052 0.948 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.935 1.318 -23.879 23.934 hybrid contribution 0.250 1.593 0.261 1.633 sum -0.686 2.911 -23.619 23.807 Atomic orbital electron populations 1.21773 0.94280 1.02505 1.01226 1.21484 0.95632 0.95623 0.89615 0.94146 1.22330 0.86860 1.01621 0.96649 1.62018 1.05693 1.11511 1.47391 1.22187 0.93838 0.90452 1.00698 1.22180 0.94577 0.97215 0.93465 1.62204 1.05932 1.11662 1.47195 1.22343 0.87383 1.02089 1.00580 1.22182 0.93888 0.90235 1.01106 1.22106 0.94548 0.97265 0.92721 1.60585 1.35112 1.32522 1.03501 1.22105 1.01084 0.93544 0.89681 1.19040 0.84263 1.01179 0.95950 0.86767 1.29126 0.94987 0.92269 0.91350 1.81037 1.12558 1.10164 1.10755 1.19619 0.97841 0.94916 0.91892 1.21048 1.46785 0.98461 0.90126 0.90797 1.24993 0.94483 0.97933 0.95725 1.69912 1.48103 1.36637 0.98946 0.86820 0.78869 0.85806 0.78072 1.19993 1.21369 1.18932 0.93124 0.91807 0.92116 0.89757 0.94290 0.94009 0.90326 0.93456 0.90410 0.91414 0.91417 0.95274 0.93586 0.90386 0.90071 0.94092 0.82313 0.89502 0.95201 0.95969 0.94805 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.41 37.16 0.35 -0.96 16 2 C 0.09 0.92 2.43 -67.71 -0.16 0.76 16 3 H 0.04 0.44 6.39 -51.93 -0.33 0.11 16 4 C 0.05 0.51 4.59 -3.83 -0.02 0.50 16 5 N -0.54 -5.81 3.54 -234.47 -0.83 -6.64 16 6 C 0.06 0.60 5.41 -3.77 -0.02 0.58 16 7 C 0.05 0.61 5.62 -3.77 -0.02 0.59 16 8 N -0.55 -5.82 4.97 -242.76 -1.21 -7.03 16 9 C 0.02 0.23 9.60 60.06 0.58 0.80 16 10 C 0.05 0.55 5.62 -3.77 -0.02 0.53 16 11 C 0.06 0.59 5.61 -3.77 -0.02 0.57 16 12 N -0.68 -8.98 6.30 -106.72 -0.67 -9.65 16 13 C 0.07 0.95 4.92 -3.83 -0.02 0.93 16 14 C 0.02 0.32 2.42 -93.40 -0.23 0.09 16 15 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 16 C 0.24 4.92 12.98 -20.74 -0.27 4.65 16 17 N -0.47 -10.38 18.54 42.17 0.78 -9.60 16 18 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 19 C -0.53 -14.34 9.15 -34.44 -0.32 -14.66 16 20 H 0.07 2.22 7.84 -52.48 -0.41 1.80 16 21 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 23 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 30 H 0.08 0.81 8.03 -51.93 -0.42 0.39 16 31 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.87 6.45 -51.93 -0.33 0.54 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 38 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.36 5.22 6.43 -39.29 -0.25 4.97 16 44 H 0.09 1.13 7.44 -51.92 -0.39 0.75 16 45 H 0.03 0.43 8.05 -51.93 -0.42 0.01 16 46 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 47 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -30.71 377.28 -9.28 -40.00 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.79 Total: 1.51 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.36 Total: -3.88 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -1.15 Total: -59.46 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.71 -9.28 -40.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326600561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.524 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds