Wall clock time and date at job start Fri Apr 10 2020 17:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38146 * 120.35194 * 2 1 4 4 C 1.39652 * 118.50137 * 180.02562 * 3 2 1 5 5 N 1.38535 * 120.48260 * 179.97438 * 4 3 2 6 6 C 1.47010 * 111.00115 * 303.64107 * 5 4 3 7 7 C 1.53099 * 109.25565 * 177.60641 * 6 5 4 8 8 O 1.43016 * 109.26090 * 56.84858 * 7 6 5 9 9 C 1.43016 * 113.73693 * 301.33174 * 8 7 6 10 10 C 1.47013 * 110.99812 * 180.02562 * 5 4 3 11 11 N 1.32914 * 119.03498 * 0.02562 * 4 3 2 12 12 C 1.32503 * 120.60832 * 0.02562 * 11 4 3 13 13 S 1.76199 * 119.18317 * 180.27688 * 12 11 4 14 14 C 1.81007 * 99.99997 * 179.72775 * 13 12 11 15 15 C 1.50697 * 109.47117 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00286 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99599 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00206 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99470 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47376 * 59.99662 * 19 17 15 21 21 H 1.48506 * 109.47062 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47090 * 299.99153 * 19 17 15 23 23 N 1.32463 * 120.34894 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46613 * 269.97444 * 1 2 3 25 25 H 1.08997 * 109.47028 * 29.97231 * 1 2 3 26 26 H 1.08996 * 109.47350 * 149.97215 * 1 2 3 27 27 H 1.08003 * 120.74671 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.50643 * 297.53697 * 6 5 4 29 29 H 1.08999 * 109.50779 * 57.67594 * 6 5 4 30 30 H 1.09000 * 109.50692 * 296.91081 * 7 6 5 31 31 H 1.09000 * 109.54013 * 176.80521 * 7 6 5 32 32 H 1.08998 * 109.50366 * 298.72956 * 9 8 7 33 33 H 1.08998 * 109.53863 * 178.62713 * 9 8 7 34 34 H 1.08997 * 109.50965 * 302.33045 * 10 5 4 35 35 H 1.08999 * 109.50889 * 62.41881 * 10 5 4 36 36 H 1.09004 * 109.46843 * 300.00065 * 14 13 12 37 37 H 1.08999 * 109.47417 * 59.99588 * 14 13 12 38 38 H 0.97004 * 119.99642 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2051 1.1921 0.0000 4 6 3.6009 1.1470 -0.0005 5 7 4.3418 2.3176 -0.0011 6 6 3.9807 3.1691 -1.1437 7 6 4.7777 4.4744 -1.0725 8 8 6.1754 4.1727 -1.0424 9 6 6.5622 3.3453 0.0581 10 6 5.7833 2.0286 -0.0022 11 7 4.2081 -0.0353 -0.0016 12 6 3.5019 -1.1565 -0.0026 13 16 4.3456 -2.7033 0.0035 14 6 2.9312 -3.8328 0.0081 15 6 3.4252 -5.2565 0.0144 16 1 4.4858 -5.4600 0.0151 17 6 2.5231 -6.2991 0.0181 18 7 1.2316 -6.0513 0.0168 19 14 3.1355 -8.0639 0.0266 20 1 3.9580 -8.2966 1.2408 21 1 1.9751 -8.9906 0.0302 22 1 3.9602 -8.3075 -1.1841 23 7 2.1763 -1.1431 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6831 2.1376 0.0004 28 1 4.2151 2.6499 -2.0730 29 1 2.9142 3.3916 -1.1092 30 1 4.5035 5.0194 -0.1692 31 1 4.5560 5.0852 -1.9476 32 1 6.3400 3.8575 0.9942 33 1 7.6310 3.1389 0.0010 34 1 6.0329 1.4183 0.8657 35 1 6.0460 1.4907 -0.9131 36 1 2.3267 -3.6544 0.8975 37 1 2.3265 -3.6615 -0.8825 38 1 0.5969 -6.7849 0.0198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005744146.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:07 Heat of formation + Delta-G solvation = 6.566359 kcal Electronic energy + Delta-G solvation = -21049.635481 eV Core-core repulsion = 17825.520735 eV Total energy + Delta-G solvation = -3224.114746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05180 -39.44138 -36.35869 -33.76550 -33.18417 -31.62974 -31.48203 -28.74566 -28.36079 -27.11014 -24.88587 -23.67039 -22.95743 -22.09592 -20.60326 -18.04608 -17.50336 -16.65718 -16.26100 -16.03047 -15.56336 -15.49749 -15.11989 -14.89860 -14.69806 -14.47709 -14.24527 -13.35877 -12.97217 -12.91438 -12.58838 -12.38297 -12.23249 -12.21622 -11.83647 -11.67971 -11.07870 -11.02480 -10.89922 -10.75066 -10.62443 -10.07685 -9.96313 -9.72475 -9.65675 -9.26862 -8.89786 -8.70408 -8.55155 -6.95263 -6.20073 -4.27218 1.13305 1.36193 2.07317 3.18649 3.26940 3.30348 3.32618 3.49387 3.56893 3.94312 4.32388 4.36042 4.54664 4.65958 4.76287 4.83501 4.95105 5.02647 5.07447 5.16501 5.19931 5.32533 5.33144 5.41672 5.50843 5.63145 5.65902 5.73051 5.84667 6.01193 6.27702 6.40848 6.80447 6.93006 7.14853 7.25893 7.36984 7.69630 7.95280 8.34473 8.73830 9.36009 10.90369 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.003522 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.629874 B = 7948.947869 C = 8869.034636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.203 3.797 3 C -0.270 4.270 4 C 0.361 3.639 5 N -0.473 5.473 6 C 0.023 3.977 7 C 0.065 3.935 8 O -0.385 6.385 9 C 0.061 3.939 10 C 0.028 3.972 11 N -0.550 5.550 12 C 0.335 3.665 13 S -0.039 6.039 14 C 0.072 3.928 15 C -0.526 4.526 16 H 0.066 0.934 17 C 0.071 3.929 18 N -0.884 5.884 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 N -0.530 5.530 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.139 0.861 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.485 20.265 -0.979 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.054 3.946 3 C -0.300 4.300 4 C 0.118 3.882 5 N -0.191 5.191 6 C -0.104 4.104 7 C -0.012 4.012 8 O -0.303 6.303 9 C -0.016 4.016 10 C -0.099 4.099 11 N -0.274 5.274 12 C -0.040 4.040 13 S 0.200 5.800 14 C -0.076 4.076 15 C -0.566 4.566 16 H 0.084 0.916 17 C -0.134 4.134 18 N -0.521 5.521 19 Si 0.733 3.267 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.198 1.198 23 N -0.250 5.250 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.157 0.843 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.059 19.329 -0.696 19.763 hybrid contribution -1.628 -0.292 -0.270 1.676 sum 2.430 19.037 -0.966 19.216 Atomic orbital electron populations 1.20750 0.88003 1.03806 1.03574 1.21567 0.97371 0.87784 0.87864 1.21857 0.93480 1.00265 1.14377 1.19939 0.90344 0.88417 0.89544 1.59183 1.06755 1.12766 1.40426 1.22963 1.01892 0.94550 0.90980 1.22686 0.80963 0.94610 1.02945 1.88004 1.23800 1.69749 1.48742 1.22800 0.99435 0.89586 0.89735 1.22719 0.84904 0.97790 1.04532 1.68495 1.40220 0.97133 1.21563 1.25384 0.89211 0.98030 0.91374 1.85799 1.16971 0.90017 1.87199 1.21322 0.90714 0.93152 1.02362 1.20625 0.93611 0.88546 1.53856 0.91573 1.24925 0.94651 0.99439 0.94403 1.69968 1.00889 1.32660 1.48581 0.86422 0.78313 0.82979 0.78990 1.19849 1.20983 1.19849 1.68913 1.07965 1.29478 1.18680 0.89787 0.90578 0.89591 0.84312 0.92500 0.88570 0.91913 0.87803 0.92171 0.87769 0.88250 0.91815 0.93007 0.93019 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 10.21 36.01 0.37 -0.93 16 2 C 0.20 3.36 6.81 -82.35 -0.56 2.80 16 3 C -0.27 -3.93 8.98 -39.09 -0.35 -4.28 16 4 C 0.36 5.78 6.40 -154.84 -0.99 4.79 16 5 N -0.47 -6.10 4.75 -172.73 -0.82 -6.92 16 6 C 0.02 0.23 5.40 -3.71 -0.02 0.21 16 7 C 0.07 0.54 7.01 37.21 0.26 0.80 16 8 O -0.38 -4.11 10.83 -35.23 -0.38 -4.49 16 9 C 0.06 0.60 7.01 37.21 0.26 0.86 16 10 C 0.03 0.34 4.83 -3.71 -0.02 0.32 16 11 N -0.55 -10.50 8.83 -12.68 -0.11 -10.62 16 12 C 0.33 7.14 7.85 -90.88 -0.71 6.42 16 13 S -0.04 -0.88 22.17 -107.50 -2.38 -3.26 16 14 C 0.07 1.91 4.56 36.00 0.16 2.07 16 15 C -0.53 -14.70 9.13 -34.44 -0.31 -15.01 16 16 H 0.07 1.80 7.71 -52.49 -0.40 1.40 16 17 C 0.07 1.97 5.46 -17.82 -0.10 1.88 16 18 N -0.88 -25.61 13.29 55.43 0.74 -24.87 16 19 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 N -0.53 -11.06 9.07 -9.75 -0.09 -11.15 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.14 1.52 7.27 -52.48 -0.38 1.14 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.79 6.90 -51.93 -0.36 0.43 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.33 7.88 -51.93 -0.41 0.92 16 35 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.05 1.46 8.11 -51.91 -0.42 1.04 16 37 H 0.05 1.45 8.11 -51.92 -0.42 1.03 16 38 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 330.85 15.07 4.99 4.99 Total: -1.00 -31.78 330.85 -10.42 -42.20 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.33 Total: -1.89 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -2.01 Total: -0.06 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.28 Total: -53.56 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.38 Total: -4.49 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.38 Total: -3.26 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.78 -10.42 -42.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005744146.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.769 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds