Wall clock time and date at job start Fri Apr 10 2020 17:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38146 * 120.35194 * 2 1 4 4 C 1.39652 * 118.50137 * 180.02562 * 3 2 1 5 5 N 1.38535 * 120.48260 * 179.97438 * 4 3 2 6 6 C 1.47010 * 111.00115 * 303.64107 * 5 4 3 7 7 C 1.53099 * 109.25565 * 177.60641 * 6 5 4 8 8 O 1.43016 * 109.26090 * 56.84858 * 7 6 5 9 9 C 1.43016 * 113.73693 * 301.33174 * 8 7 6 10 10 C 1.47013 * 110.99812 * 180.02562 * 5 4 3 11 11 N 1.32914 * 119.03498 * 0.02562 * 4 3 2 12 12 C 1.32503 * 120.60832 * 0.02562 * 11 4 3 13 13 S 1.76199 * 119.18317 * 180.27688 * 12 11 4 14 14 C 1.81007 * 99.99997 * 179.72775 * 13 12 11 15 15 C 1.50697 * 109.47117 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00286 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99599 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00206 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99470 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47376 * 59.99662 * 19 17 15 21 21 H 1.48506 * 109.47062 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47090 * 299.99153 * 19 17 15 23 23 N 1.32463 * 120.34894 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46613 * 269.97444 * 1 2 3 25 25 H 1.08997 * 109.47028 * 29.97231 * 1 2 3 26 26 H 1.08996 * 109.47350 * 149.97215 * 1 2 3 27 27 H 1.08003 * 120.74671 * 0.02562 * 3 2 1 28 28 H 1.08998 * 109.50643 * 297.53697 * 6 5 4 29 29 H 1.08999 * 109.50779 * 57.67594 * 6 5 4 30 30 H 1.09000 * 109.50692 * 296.91081 * 7 6 5 31 31 H 1.09000 * 109.54013 * 176.80521 * 7 6 5 32 32 H 1.08998 * 109.50366 * 298.72956 * 9 8 7 33 33 H 1.08998 * 109.53863 * 178.62713 * 9 8 7 34 34 H 1.08997 * 109.50965 * 302.33045 * 10 5 4 35 35 H 1.08999 * 109.50889 * 62.41881 * 10 5 4 36 36 H 1.09004 * 109.46843 * 300.00065 * 14 13 12 37 37 H 1.08999 * 109.47417 * 59.99588 * 14 13 12 38 38 H 0.97004 * 119.99642 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2051 1.1921 0.0000 4 6 3.6009 1.1470 -0.0005 5 7 4.3418 2.3176 -0.0011 6 6 3.9807 3.1691 -1.1437 7 6 4.7777 4.4744 -1.0725 8 8 6.1754 4.1727 -1.0424 9 6 6.5622 3.3453 0.0581 10 6 5.7833 2.0286 -0.0022 11 7 4.2081 -0.0353 -0.0016 12 6 3.5019 -1.1565 -0.0026 13 16 4.3456 -2.7033 0.0035 14 6 2.9312 -3.8328 0.0081 15 6 3.4252 -5.2565 0.0144 16 1 4.4858 -5.4600 0.0151 17 6 2.5231 -6.2991 0.0181 18 7 1.2316 -6.0513 0.0168 19 14 3.1355 -8.0639 0.0266 20 1 3.9580 -8.2966 1.2408 21 1 1.9751 -8.9906 0.0302 22 1 3.9602 -8.3075 -1.1841 23 7 2.1763 -1.1431 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3634 -0.8897 -0.5142 27 1 1.6831 2.1376 0.0004 28 1 4.2151 2.6499 -2.0730 29 1 2.9142 3.3916 -1.1092 30 1 4.5035 5.0194 -0.1692 31 1 4.5560 5.0852 -1.9476 32 1 6.3400 3.8575 0.9942 33 1 7.6310 3.1389 0.0010 34 1 6.0329 1.4183 0.8657 35 1 6.0460 1.4907 -0.9131 36 1 2.3267 -3.6544 0.8975 37 1 2.3265 -3.6615 -0.8825 38 1 0.5969 -6.7849 0.0198 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005744146.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:07 Heat of formation + Delta-G solvation = -14.513555 kcal Electronic energy + Delta-G solvation = -21050.549575 eV Core-core repulsion = 17825.520735 eV Total energy + Delta-G solvation = -3225.028840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.30645 -40.43697 -37.37670 -35.34100 -35.03309 -32.87865 -32.35167 -30.72487 -29.64134 -28.07296 -26.14585 -25.23786 -24.44540 -23.28237 -21.57777 -19.33254 -18.98149 -18.35199 -17.59840 -17.09061 -16.71950 -16.62939 -16.56089 -16.03328 -15.86043 -15.66998 -15.31339 -15.02631 -14.47554 -14.36614 -14.24058 -13.88135 -13.44644 -13.22095 -12.87764 -12.73668 -12.69328 -12.50519 -12.44147 -12.14093 -11.72258 -11.65419 -11.59625 -11.21091 -11.14005 -10.78006 -10.68583 -10.37334 -9.80003 -8.71520 -8.32955 -6.49718 -0.25881 0.05295 0.41027 1.40781 1.44669 1.49968 1.58138 2.12646 2.36613 2.57536 2.85967 3.01103 3.12817 3.48706 3.68731 3.78936 3.92882 4.01159 4.11010 4.18543 4.21082 4.26287 4.47397 4.66374 4.68619 4.73248 4.74498 4.78051 4.89886 4.94129 4.94600 5.05065 5.25696 5.30062 5.53676 5.74826 5.81222 6.06152 6.09403 6.57871 6.92610 7.18871 8.78714 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.003522 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.629874 B = 7948.947869 C = 8869.034636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.183 3.817 3 C -0.244 4.244 4 C 0.349 3.651 5 N -0.466 5.466 6 C 0.019 3.981 7 C 0.065 3.935 8 O -0.400 6.400 9 C 0.070 3.930 10 C 0.028 3.972 11 N -0.563 5.563 12 C 0.315 3.685 13 S -0.044 6.044 14 C 0.089 3.911 15 C -0.551 4.551 16 H 0.069 0.931 17 C 0.020 3.980 18 N -0.919 5.919 19 Si 0.979 3.021 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.264 1.264 23 N -0.568 5.568 24 H 0.097 0.903 25 H 0.119 0.881 26 H 0.065 0.935 27 H 0.187 0.813 28 H 0.042 0.958 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.130 0.870 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 22.602 -1.023 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.037 3.963 3 C -0.272 4.272 4 C 0.106 3.894 5 N -0.184 5.184 6 C -0.106 4.106 7 C -0.011 4.011 8 O -0.319 6.319 9 C -0.007 4.007 10 C -0.099 4.099 11 N -0.287 5.287 12 C -0.061 4.061 13 S 0.193 5.807 14 C -0.059 4.059 15 C -0.590 4.590 16 H 0.087 0.913 17 C -0.182 4.182 18 N -0.556 5.556 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.189 1.189 23 N -0.290 5.290 24 H 0.115 0.885 25 H 0.137 0.863 26 H 0.084 0.916 27 H 0.204 0.796 28 H 0.060 0.940 29 H 0.140 0.860 30 H 0.096 0.904 31 H 0.148 0.852 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.825 21.737 -0.745 22.084 hybrid contribution -1.614 -0.734 -0.260 1.792 sum 2.211 21.003 -1.005 21.143 Atomic orbital electron populations 1.20880 0.85111 1.04938 1.04688 1.22315 0.99247 0.87327 0.87457 1.22308 0.92795 1.01394 1.10707 1.20463 0.91624 0.88341 0.88961 1.59339 1.06634 1.11163 1.41264 1.23198 1.03902 0.94518 0.89023 1.22912 0.79468 0.93775 1.04986 1.87994 1.25275 1.69570 1.49072 1.22807 0.99790 0.87933 0.90200 1.22712 0.85205 0.99251 1.02726 1.68409 1.40704 0.97683 1.21940 1.24908 0.89713 0.97707 0.93801 1.85408 1.15272 0.91006 1.88977 1.20815 0.91557 0.94182 0.99339 1.20990 0.93973 0.89620 1.54432 0.91337 1.25931 0.94690 1.04216 0.93408 1.70091 1.02216 1.34303 1.49012 0.85295 0.78082 0.76987 0.79478 1.18901 1.20048 1.18891 1.68850 1.08012 1.32245 1.19855 0.88511 0.86272 0.91582 0.79570 0.93983 0.85975 0.90416 0.85184 0.90844 0.86320 0.89758 0.94011 0.96037 0.96015 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.29 10.21 71.24 0.73 -1.56 16 2 C 0.18 5.90 6.81 42.44 0.29 6.19 16 3 C -0.24 -6.43 8.98 22.59 0.20 -6.23 16 4 C 0.35 10.74 6.40 133.19 0.85 11.59 16 5 N -0.47 -11.07 4.75 -700.40 -3.33 -14.40 16 6 C 0.02 0.32 5.40 86.32 0.47 0.79 16 7 C 0.07 0.85 7.01 72.02 0.50 1.35 16 8 O -0.40 -7.51 10.83 -148.98 -1.61 -9.12 16 9 C 0.07 1.22 7.01 72.02 0.50 1.72 16 10 C 0.03 0.69 4.83 86.31 0.42 1.10 16 11 N -0.56 -21.89 8.83 -194.02 -1.71 -23.60 16 12 C 0.32 13.99 7.85 180.44 1.42 15.41 16 13 S -0.04 -2.12 22.17 -56.49 -1.25 -3.38 16 14 C 0.09 5.03 4.56 71.24 0.33 5.36 16 15 C -0.55 -31.97 9.13 25.60 0.23 -31.73 16 16 H 0.07 3.85 7.71 -2.91 -0.02 3.82 16 17 C 0.02 1.11 5.46 84.66 0.46 1.57 16 18 N -0.92 -54.84 13.29 21.45 0.28 -54.55 16 19 Si 0.98 43.64 29.54 68.60 2.03 45.67 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 N -0.57 -24.55 9.07 -184.77 -1.68 -26.22 16 24 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.12 1.70 8.09 -2.39 -0.02 1.68 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.19 3.06 7.27 -2.91 -0.02 3.04 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.12 1.42 6.90 -2.39 -0.02 1.40 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.13 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 2.27 7.88 -2.39 -0.02 2.25 16 35 H 0.04 1.19 8.04 -2.39 -0.02 1.17 16 36 H 0.02 1.30 8.11 -2.39 -0.02 1.28 16 37 H 0.02 1.31 8.11 -2.40 -0.02 1.29 16 38 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -73.18 330.85 0.19 -72.99 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 1.06 Total: 7.05 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.40 Total: 5.56 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -6.43 Total: -118.77 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -1.61 Total: -9.12 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -1.25 Total: -3.38 kcal Total: -73.18 0.19 -72.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005744146.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.481 kcal (2) G-P(sol) polarization free energy of solvation -73.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds