Wall clock time and date at job start Fri Apr 10 2020 17:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30949 * 122.90600 * 2 1 4 4 C 1.29425 * 117.36748 * 180.02562 * 3 2 1 5 5 S 1.70959 * 110.38909 * 359.72659 * 4 3 2 6 6 C 1.35667 * 122.90757 * 180.02562 * 2 1 3 7 7 C 1.46687 * 126.12706 * 359.97438 * 6 2 1 8 8 O 1.21689 * 119.99425 * 359.97438 * 7 6 2 9 9 N 1.34770 * 119.99866 * 179.97438 * 7 6 2 10 10 C 1.46500 * 119.99846 * 180.02562 * 9 7 6 11 11 C 1.53042 * 109.45810 * 205.00257 * 10 9 7 12 12 C 1.53198 * 109.31086 * 178.61534 * 11 10 9 13 13 N 1.46926 * 108.89429 * 54.55921 * 12 11 10 14 14 C 1.36937 * 120.62571 * 126.46041 * 13 12 11 15 15 H 1.07997 * 120.00221 * 332.73438 * 14 13 12 16 16 C 1.38818 * 119.99512 * 152.73441 * 14 13 12 17 17 N 1.31619 * 119.99922 * 159.41180 * 16 14 13 18 18 Si 1.86800 * 120.00017 * 339.41150 * 16 14 13 19 19 H 1.48500 * 109.47149 * 92.90848 * 18 16 14 20 20 H 1.48502 * 109.46858 * 212.90584 * 18 16 14 21 21 H 1.48494 * 109.47186 * 332.90612 * 18 16 14 22 22 C 1.46952 * 118.71485 * 306.64327 * 13 12 11 23 23 C 1.53034 * 109.46260 * 84.93401 * 10 9 7 24 24 H 1.09002 * 109.47051 * 269.99647 * 1 2 3 25 25 H 1.09002 * 109.47301 * 29.99519 * 1 2 3 26 26 H 1.08994 * 109.47264 * 150.00344 * 1 2 3 27 27 H 1.07997 * 124.81105 * 179.97438 * 4 3 2 28 28 H 0.97000 * 120.00196 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.46248 * 324.97132 * 10 9 7 30 30 H 1.08993 * 109.49979 * 58.66457 * 11 10 9 31 31 H 1.08993 * 109.49864 * 298.56313 * 11 10 9 32 32 H 1.09004 * 109.58728 * 174.42371 * 12 11 10 33 33 H 1.09000 * 109.58513 * 294.70045 * 12 11 10 34 34 H 0.96996 * 120.00085 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.46884 * 293.57037 * 22 13 12 36 36 H 1.09007 * 109.71303 * 173.28716 * 22 13 12 37 37 H 1.09004 * 109.49724 * 301.33190 * 23 10 9 38 38 H 1.08996 * 109.49993 * 61.42953 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5065 0.9745 -0.0005 5 16 3.9447 -0.6780 0.0066 6 6 2.2440 -1.1390 -0.0005 7 6 1.7191 -2.5087 -0.0006 8 8 0.5173 -2.6997 0.0003 9 7 2.5679 -3.5556 -0.0016 10 6 2.0437 -4.9236 -0.0023 11 6 3.0828 -5.8680 0.6065 12 6 2.5178 -7.2916 0.6359 13 7 2.0877 -7.6609 -0.7196 14 6 2.5443 -8.8103 -1.3075 15 1 3.5032 -9.2181 -1.0234 16 6 1.7747 -9.4512 -2.2687 17 7 2.3394 -10.2878 -3.1134 18 14 -0.0624 -9.1264 -2.3631 19 1 -0.3223 -8.0312 -3.3317 20 1 -0.7605 -10.3586 -2.8102 21 1 -0.5648 -8.7315 -1.0228 22 6 1.1615 -6.7710 -1.4334 23 6 1.7417 -5.3532 -1.4397 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5137 27 1 4.2057 1.7975 -0.0010 28 1 3.5259 -3.4033 -0.0027 29 1 1.1282 -4.9620 0.5880 30 1 3.3147 -5.5476 1.6222 31 1 3.9898 -5.8490 0.0025 32 1 3.2883 -7.9836 0.9761 33 1 1.6651 -7.3324 1.3137 34 1 1.8016 -10.7359 -3.7848 35 1 0.1966 -6.7687 -0.9264 36 1 1.0346 -7.1184 -2.4588 37 1 1.0190 -4.6664 -1.8804 38 1 2.6613 -5.3390 -2.0246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051099795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:18 Heat of formation + Delta-G solvation = 32.782443 kcal Electronic energy + Delta-G solvation = -21499.242910 eV Core-core repulsion = 18276.264979 eV Total energy + Delta-G solvation = -3222.977931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59337 -39.44190 -37.61107 -34.70191 -32.39596 -32.03128 -30.47112 -30.37544 -28.32938 -25.40261 -24.95792 -22.92131 -22.55249 -21.15707 -20.15544 -19.18646 -18.63983 -17.16019 -16.63196 -16.18168 -15.62761 -15.39589 -14.71825 -14.43967 -14.18163 -13.94987 -13.86608 -13.78960 -13.19092 -12.96296 -12.73378 -12.67063 -12.34251 -11.97629 -11.83271 -11.61776 -11.13745 -10.87698 -10.64974 -10.31982 -10.19273 -10.10552 -10.01293 -9.86685 -9.74914 -9.51949 -9.18854 -8.90535 -8.63385 -7.02084 -5.96687 -3.33127 -0.04692 0.87333 1.24474 2.19140 3.01626 3.06759 3.33817 3.49819 3.53231 3.83452 4.52667 4.62090 4.71067 4.85179 4.92552 5.12593 5.25352 5.37630 5.48247 5.53746 5.59857 5.65262 5.77152 5.96211 5.99765 6.09350 6.16224 6.25992 6.36562 6.52503 6.58725 6.63832 6.65270 6.87164 7.24192 7.43098 7.93450 8.07788 8.30483 8.91205 9.70014 10.07030 11.19096 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.029223 B = 0.003686 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.914939 B = 7594.474605 C = 8047.662240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.142 3.858 3 N -0.475 5.475 4 C 0.035 3.965 5 S 0.160 5.840 6 C -0.291 4.291 7 C 0.594 3.406 8 O -0.521 6.521 9 N -0.717 5.717 10 C 0.151 3.849 11 C -0.142 4.142 12 C 0.152 3.848 13 N -0.606 5.606 14 C -0.262 4.262 15 H 0.086 0.914 16 C 0.025 3.975 17 N -0.908 5.908 18 Si 0.882 3.118 19 H -0.288 1.288 20 H -0.303 1.303 21 H -0.269 1.269 22 C 0.129 3.871 23 C -0.142 4.142 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.206 0.794 28 H 0.394 0.606 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.796 21.666 7.788 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.004 3.996 3 N -0.189 5.189 4 C -0.261 4.261 5 S 0.415 5.585 6 C -0.415 4.415 7 C 0.379 3.621 8 O -0.399 6.399 9 N -0.367 5.367 10 C 0.048 3.952 11 C -0.181 4.181 12 C 0.026 3.974 13 N -0.330 5.330 14 C -0.390 4.390 15 H 0.104 0.896 16 C -0.174 4.174 17 N -0.551 5.551 18 Si 0.712 3.288 19 H -0.216 1.216 20 H -0.231 1.231 21 H -0.194 1.194 22 C 0.003 3.997 23 C -0.182 4.182 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.222 0.778 28 H 0.228 0.772 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.722 21.381 7.674 23.019 hybrid contribution -1.188 0.427 -0.242 1.286 sum 2.533 21.807 7.432 23.178 Atomic orbital electron populations 1.20680 0.85831 1.04641 1.03780 1.20771 0.98856 0.84913 0.95019 1.66134 1.04909 1.31337 1.16542 1.28711 0.95312 1.00391 1.01694 1.83967 1.05616 1.03444 1.65511 1.25630 0.96114 0.99413 1.20345 1.16676 0.86352 0.82311 0.76803 1.90799 1.14171 1.84817 1.50102 1.46202 1.09251 1.06590 1.74621 1.21080 0.97968 0.78237 0.97889 1.22352 0.98526 0.97479 0.99781 1.20852 0.97451 0.92109 0.87014 1.44400 1.53963 1.22749 1.11893 1.18910 1.01322 0.99892 1.18916 0.89625 1.25270 0.97833 0.96787 0.97559 1.69833 1.35333 1.31695 1.18207 0.86972 0.87748 0.75879 0.78211 1.21564 1.23095 1.19442 1.21324 0.92317 0.88431 0.97658 1.22407 1.01656 0.98652 0.95472 0.90062 0.90771 0.87963 0.77765 0.77179 0.89487 0.92016 0.91282 0.91277 0.95623 0.92732 0.95394 0.90664 0.92235 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.69 36.00 0.35 -0.67 16 2 C 0.14 1.71 6.79 -83.89 -0.57 1.14 16 3 N -0.48 -5.24 10.50 -11.53 -0.12 -5.36 16 4 C 0.03 0.27 12.22 51.75 0.63 0.90 16 5 S 0.16 1.30 22.35 -107.50 -2.40 -1.11 16 6 C -0.29 -3.49 6.48 -37.09 -0.24 -3.73 16 7 C 0.59 8.49 7.74 -12.85 -0.10 8.39 16 8 O -0.52 -8.91 13.93 5.20 0.07 -8.84 16 9 N -0.72 -9.49 5.07 -55.08 -0.28 -9.77 16 10 C 0.15 2.39 2.41 -67.89 -0.16 2.22 16 11 C -0.14 -2.13 5.55 -26.61 -0.15 -2.27 16 12 C 0.15 2.85 6.51 -3.71 -0.02 2.83 16 13 N -0.61 -14.12 2.78 -172.29 -0.48 -14.60 16 14 C -0.26 -7.22 10.04 -15.06 -0.15 -7.37 16 15 H 0.09 2.49 8.05 -52.49 -0.42 2.07 16 16 C 0.02 0.71 5.23 -17.43 -0.09 0.62 16 17 N -0.91 -27.70 13.97 55.49 0.78 -26.92 16 18 Si 0.88 22.52 24.35 -169.99 -4.14 18.38 16 19 H -0.29 -7.15 6.62 56.52 0.37 -6.78 16 20 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 21 H -0.27 -6.78 6.63 56.52 0.37 -6.41 16 22 C 0.13 2.84 4.20 -3.70 -0.02 2.82 16 23 C -0.14 -2.59 5.65 -26.61 -0.15 -2.74 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 1.31 6.01 -51.93 -0.31 1.00 16 27 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 28 H 0.39 4.26 7.79 -40.82 -0.32 3.94 16 29 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.03 0.62 7.07 -51.93 -0.37 0.26 16 36 H 0.08 1.82 4.50 -51.92 -0.23 1.59 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 318.12 15.07 4.79 4.79 Total: -1.00 -32.79 318.12 -7.48 -40.27 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.03 Total: 1.01 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -0.67 Total: 2.15 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.10 Total: -56.66 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.07 Total: -8.84 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.14 Total: 18.38 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.40 Total: -1.11 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.79 -7.48 -40.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051099795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.052 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds