Wall clock time and date at job start Fri Apr 10 2020 17:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30949 * 122.90600 * 2 1 4 4 C 1.29425 * 117.36748 * 180.02562 * 3 2 1 5 5 S 1.70959 * 110.38909 * 359.72659 * 4 3 2 6 6 C 1.35667 * 122.90757 * 180.02562 * 2 1 3 7 7 C 1.46687 * 126.12706 * 359.97438 * 6 2 1 8 8 O 1.21689 * 119.99425 * 359.97438 * 7 6 2 9 9 N 1.34770 * 119.99866 * 179.97438 * 7 6 2 10 10 C 1.46500 * 119.99846 * 180.02562 * 9 7 6 11 11 C 1.53042 * 109.45810 * 205.00257 * 10 9 7 12 12 C 1.53198 * 109.31086 * 178.61534 * 11 10 9 13 13 N 1.46926 * 108.89429 * 54.55921 * 12 11 10 14 14 C 1.36937 * 120.62571 * 126.46041 * 13 12 11 15 15 H 1.07997 * 120.00221 * 332.73438 * 14 13 12 16 16 C 1.38818 * 119.99512 * 152.73441 * 14 13 12 17 17 N 1.31619 * 119.99922 * 159.41180 * 16 14 13 18 18 Si 1.86800 * 120.00017 * 339.41150 * 16 14 13 19 19 H 1.48500 * 109.47149 * 92.90848 * 18 16 14 20 20 H 1.48502 * 109.46858 * 212.90584 * 18 16 14 21 21 H 1.48494 * 109.47186 * 332.90612 * 18 16 14 22 22 C 1.46952 * 118.71485 * 306.64327 * 13 12 11 23 23 C 1.53034 * 109.46260 * 84.93401 * 10 9 7 24 24 H 1.09002 * 109.47051 * 269.99647 * 1 2 3 25 25 H 1.09002 * 109.47301 * 29.99519 * 1 2 3 26 26 H 1.08994 * 109.47264 * 150.00344 * 1 2 3 27 27 H 1.07997 * 124.81105 * 179.97438 * 4 3 2 28 28 H 0.97000 * 120.00196 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.46248 * 324.97132 * 10 9 7 30 30 H 1.08993 * 109.49979 * 58.66457 * 11 10 9 31 31 H 1.08993 * 109.49864 * 298.56313 * 11 10 9 32 32 H 1.09004 * 109.58728 * 174.42371 * 12 11 10 33 33 H 1.09000 * 109.58513 * 294.70045 * 12 11 10 34 34 H 0.96996 * 120.00085 * 179.97438 * 17 16 14 35 35 H 1.08999 * 109.46884 * 293.57037 * 22 13 12 36 36 H 1.09007 * 109.71303 * 173.28716 * 22 13 12 37 37 H 1.09004 * 109.49724 * 301.33190 * 23 10 9 38 38 H 1.08996 * 109.49993 * 61.42953 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5065 0.9745 -0.0005 5 16 3.9447 -0.6780 0.0066 6 6 2.2440 -1.1390 -0.0005 7 6 1.7191 -2.5087 -0.0006 8 8 0.5173 -2.6997 0.0003 9 7 2.5679 -3.5556 -0.0016 10 6 2.0437 -4.9236 -0.0023 11 6 3.0828 -5.8680 0.6065 12 6 2.5178 -7.2916 0.6359 13 7 2.0877 -7.6609 -0.7196 14 6 2.5443 -8.8103 -1.3075 15 1 3.5032 -9.2181 -1.0234 16 6 1.7747 -9.4512 -2.2687 17 7 2.3394 -10.2878 -3.1134 18 14 -0.0624 -9.1264 -2.3631 19 1 -0.3223 -8.0312 -3.3317 20 1 -0.7605 -10.3586 -2.8102 21 1 -0.5648 -8.7315 -1.0228 22 6 1.1615 -6.7710 -1.4334 23 6 1.7417 -5.3532 -1.4397 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5137 27 1 4.2057 1.7975 -0.0010 28 1 3.5259 -3.4033 -0.0027 29 1 1.1282 -4.9620 0.5880 30 1 3.3147 -5.5476 1.6222 31 1 3.9898 -5.8490 0.0025 32 1 3.2883 -7.9836 0.9761 33 1 1.6651 -7.3324 1.3137 34 1 1.8016 -10.7359 -3.7848 35 1 0.1966 -6.7687 -0.9264 36 1 1.0346 -7.1184 -2.4588 37 1 1.0190 -4.6664 -1.8804 38 1 2.6613 -5.3390 -2.0246 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051099795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:17 Heat of formation + Delta-G solvation = 8.767275 kcal Electronic energy + Delta-G solvation = -21500.284286 eV Core-core repulsion = 18276.264979 eV Total energy + Delta-G solvation = -3224.019307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52367 -40.49137 -39.06997 -36.16445 -34.14520 -32.99012 -32.00425 -31.95933 -29.34255 -26.81147 -25.99881 -24.48547 -24.01964 -22.40958 -21.49073 -20.31787 -19.41976 -18.86878 -17.88195 -17.42786 -16.92486 -16.56717 -15.97355 -15.88872 -15.51286 -15.37189 -15.03540 -14.76076 -14.59625 -14.53643 -14.13215 -13.91975 -13.53558 -13.48271 -13.38263 -12.73189 -12.58413 -12.38590 -12.24316 -12.06189 -11.78850 -11.51351 -11.48451 -11.21971 -10.82203 -10.71127 -10.65392 -10.15593 -9.85490 -8.97918 -8.17909 -5.49259 -0.80455 0.17456 0.53975 1.28907 1.36807 1.39911 1.48157 1.95951 2.05158 2.40165 3.03340 3.17406 3.32777 3.64878 3.80201 3.90142 4.01602 4.18196 4.19673 4.28635 4.43992 4.62800 4.65692 4.66672 4.73353 4.81641 4.84642 4.92584 4.98606 5.06313 5.13391 5.25034 5.39127 5.42578 5.86125 6.12409 6.34643 6.56080 6.89694 7.03599 7.60587 8.01704 9.01726 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.029223 B = 0.003686 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.914939 B = 7594.474605 C = 8047.662240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.136 3.864 3 N -0.504 5.504 4 C 0.048 3.952 5 S 0.220 5.780 6 C -0.329 4.329 7 C 0.593 3.407 8 O -0.557 6.557 9 N -0.706 5.706 10 C 0.161 3.839 11 C -0.127 4.127 12 C 0.144 3.856 13 N -0.619 5.619 14 C -0.245 4.245 15 H 0.061 0.939 16 C -0.031 4.031 17 N -0.954 5.954 18 Si 0.938 3.062 19 H -0.281 1.281 20 H -0.310 1.310 21 H -0.263 1.263 22 C 0.126 3.874 23 C -0.131 4.131 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.248 0.752 28 H 0.409 0.591 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.261 0.739 35 H 0.028 0.972 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.987 24.437 9.130 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.003 4.003 3 N -0.219 5.219 4 C -0.246 4.246 5 S 0.475 5.525 6 C -0.453 4.453 7 C 0.380 3.620 8 O -0.437 6.437 9 N -0.357 5.357 10 C 0.057 3.943 11 C -0.166 4.166 12 C 0.019 3.981 13 N -0.344 5.344 14 C -0.375 4.375 15 H 0.079 0.921 16 C -0.226 4.226 17 N -0.601 5.601 18 Si 0.767 3.233 19 H -0.208 1.208 20 H -0.238 1.238 21 H -0.188 1.188 22 C 0.000 4.000 23 C -0.171 4.171 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.263 0.737 28 H 0.245 0.755 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.951 24.202 9.054 26.310 hybrid contribution -1.419 -0.329 -0.601 1.576 sum 3.531 23.873 8.453 25.570 Atomic orbital electron populations 1.20613 0.86276 1.04099 1.03817 1.20894 0.99181 0.85496 0.94696 1.66191 1.06235 1.30960 1.18485 1.29500 0.94954 1.01757 0.98367 1.83730 1.01851 1.02750 1.64133 1.25444 0.99015 0.98021 1.22814 1.16971 0.85924 0.83276 0.75834 1.90781 1.15754 1.85573 1.51619 1.45926 1.09952 1.05349 1.74480 1.20783 0.98051 0.79725 0.95790 1.22180 0.97815 0.94614 1.01994 1.21092 0.97941 0.94447 0.84612 1.44534 1.54163 1.21841 1.13868 1.18913 1.00129 1.00593 1.17846 0.92089 1.25823 1.01288 0.97486 0.98000 1.69944 1.36549 1.33948 1.19627 0.86051 0.83289 0.75452 0.78472 1.20773 1.23837 1.18784 1.21277 0.92428 0.90236 0.96031 1.22240 1.01224 0.96158 0.97526 0.89758 0.89750 0.89935 0.73654 0.75499 0.90587 0.88372 0.90922 0.91157 0.94658 0.92970 0.95408 0.93193 0.92256 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.98 9.69 71.23 0.69 -1.29 16 2 C 0.14 3.09 6.79 42.09 0.29 3.38 16 3 N -0.50 -9.86 10.50 -190.40 -2.00 -11.85 16 4 C 0.05 0.57 12.22 130.60 1.60 2.17 16 5 S 0.22 2.76 22.35 -56.49 -1.26 1.50 16 6 C -0.33 -7.26 6.48 23.88 0.15 -7.11 16 7 C 0.59 16.15 7.74 86.45 0.67 16.82 16 8 O -0.56 -18.92 13.93 -4.31 -0.06 -18.98 16 9 N -0.71 -17.04 5.07 -446.38 -2.26 -19.31 16 10 C 0.16 4.74 2.41 45.02 0.11 4.85 16 11 C -0.13 -3.43 5.55 30.67 0.17 -3.26 16 12 C 0.14 5.13 6.51 86.36 0.56 5.69 16 13 N -0.62 -28.48 2.78 -699.00 -1.94 -30.42 16 14 C -0.25 -13.65 10.04 84.03 0.84 -12.81 16 15 H 0.06 3.64 8.05 -2.91 -0.02 3.62 16 16 C -0.03 -1.81 5.23 84.86 0.44 -1.37 16 17 N -0.95 -59.84 13.97 21.65 0.30 -59.53 16 18 Si 0.94 47.41 24.35 68.60 1.67 49.08 16 19 H -0.28 -13.68 6.62 99.48 0.66 -13.02 16 20 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 21 H -0.26 -12.86 6.63 99.48 0.66 -12.20 16 22 C 0.13 5.48 4.20 86.36 0.36 5.84 16 23 C -0.13 -4.65 5.65 30.67 0.17 -4.48 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.08 2.17 6.01 -2.39 -0.01 2.15 16 27 H 0.25 0.57 8.06 -2.91 -0.02 0.54 16 28 H 0.41 7.50 7.79 -92.71 -0.72 6.78 16 29 H 0.08 2.48 7.58 -2.39 -0.02 2.46 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 2.47 7.93 -2.38 -0.02 2.45 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.03 1.22 7.07 -2.39 -0.02 1.20 16 36 H 0.05 2.42 4.50 -2.38 -0.01 2.41 16 37 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -72.93 318.12 0.78 -72.15 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.27 Total: 8.94 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 6.06 Total: 8.44 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -5.90 Total: -121.12 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.06 Total: -18.98 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.67 Total: 49.08 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.26 Total: 1.50 kcal Total: -72.93 0.78 -72.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051099795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.915 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds