Wall clock time and date at job start Fri Apr 10 2020 17:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76194 * 100.00144 * 2 1 4 4 N 1.32563 * 119.22081 * 179.97438 * 3 2 1 5 5 C 1.32264 * 120.73102 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.39340 * 179.97438 * 5 4 3 7 7 C 1.38619 * 119.20640 * 0.02562 * 5 4 3 8 8 C 1.50693 * 120.71635 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47079 * 89.99950 * 8 7 5 10 10 C 1.50703 * 109.47457 * 180.02562 * 9 8 7 11 11 O 1.21292 * 119.99534 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99950 * 180.02562 * 10 9 8 13 13 C 1.37102 * 119.99657 * 179.97438 * 12 10 9 14 14 H 1.07994 * 120.00329 * 0.02562 * 13 12 10 15 15 C 1.38950 * 119.99783 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00154 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00064 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47211 * 90.00197 * 17 15 13 19 19 H 1.48501 * 109.47324 * 210.00573 * 17 15 13 20 20 H 1.48507 * 109.46816 * 330.00428 * 17 15 13 21 21 C 1.38628 * 118.56714 * 0.02562 * 7 5 4 22 22 C 1.50697 * 120.39304 * 179.97438 * 21 7 5 23 23 N 1.32254 * 119.20392 * 359.97438 * 21 7 5 24 24 H 1.08997 * 109.47543 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47246 * 300.00393 * 1 2 3 26 26 H 1.08998 * 109.47259 * 59.99938 * 1 2 3 27 27 H 1.09000 * 109.47467 * 90.00106 * 6 5 4 28 28 H 1.09001 * 109.47142 * 209.99988 * 6 5 4 29 29 H 1.09004 * 109.47722 * 329.99664 * 6 5 4 30 30 H 1.08993 * 109.47533 * 209.99986 * 8 7 5 31 31 H 1.09000 * 109.47398 * 330.00351 * 8 7 5 32 32 H 1.08998 * 109.47409 * 300.00543 * 9 8 7 33 33 H 1.09008 * 109.46532 * 60.00258 * 9 8 7 34 34 H 0.97005 * 120.00366 * 0.02562 * 12 10 9 35 35 H 0.97005 * 120.00293 * 179.97438 * 16 15 13 36 36 H 1.09004 * 109.47068 * 90.00273 * 22 21 7 37 37 H 1.09000 * 109.46686 * 209.99426 * 22 21 7 38 38 H 1.08992 * 109.47759 * 329.99708 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 3.3677 2.1715 0.0005 5 6 3.6317 3.4676 0.0000 6 6 5.0575 3.9553 0.0012 7 6 2.5810 4.3718 -0.0005 8 6 2.8428 5.8559 -0.0017 9 6 2.9311 6.3570 -1.4445 10 6 3.1935 7.8410 -1.4458 11 8 3.2998 8.4389 -0.3958 12 7 3.3100 8.5038 -2.6135 13 6 3.5481 9.8539 -2.6146 14 1 3.6428 10.3863 -1.6798 15 6 3.6687 10.5371 -3.8185 16 7 3.5540 9.8893 -4.9560 17 14 3.9939 12.3766 -3.8200 18 1 5.4588 12.6204 -3.8207 19 1 3.3903 12.9851 -5.0328 20 1 3.3911 12.9869 -2.6077 21 6 1.2844 3.8815 0.0000 22 6 0.1115 4.8277 0.0001 23 7 1.0891 2.5734 0.0005 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 5.4024 4.0723 -1.0262 28 1 5.1128 4.9152 0.5145 29 1 5.6889 3.2311 0.5162 30 1 2.0296 6.3687 0.5119 31 1 3.7824 6.0595 0.5118 32 1 3.7443 5.8442 -1.9582 33 1 1.9914 6.1534 -1.9580 34 1 3.2245 8.0257 -3.4532 35 1 3.6378 10.3663 -5.7965 36 1 -0.1717 5.0554 -1.0276 37 1 -0.7300 4.3631 0.5142 38 1 0.3874 5.7486 0.5135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058179605.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:20 Heat of formation + Delta-G solvation = -12.853715 kcal Electronic energy + Delta-G solvation = -20902.341708 eV Core-core repulsion = 17677.384844 eV Total energy + Delta-G solvation = -3224.956864 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19546 -38.32001 -35.20491 -34.92923 -33.93311 -31.36717 -30.70010 -29.81228 -28.85138 -27.65750 -25.85097 -24.29895 -21.90031 -21.76410 -19.15134 -18.09739 -17.88997 -17.72490 -16.20183 -15.50183 -15.13188 -14.72916 -14.63564 -14.04559 -13.88157 -13.79027 -13.73699 -13.60285 -13.37125 -12.87554 -12.77612 -12.63345 -12.48405 -12.40255 -11.95399 -11.80731 -11.54323 -11.12521 -11.06555 -10.67477 -10.49568 -10.42645 -10.30329 -10.25855 -9.67356 -9.56671 -9.29759 -8.47286 -8.02631 -7.85276 -6.46527 -3.87829 0.73154 1.00443 1.10248 1.95675 3.14247 3.23571 3.29008 3.52186 3.84893 3.96518 4.13242 4.30815 4.52163 4.70253 4.83623 4.91915 4.98014 5.19986 5.24468 5.31209 5.40951 5.45760 5.49298 5.53988 5.56391 5.58945 5.74083 5.81586 5.89796 6.01119 6.23004 6.37097 6.37413 6.54909 6.92635 7.50524 7.83919 8.00319 8.54407 9.12078 9.48927 9.99241 10.70898 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.002951 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.185244 B = 9486.946353 C = 9672.625720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.010 6.010 3 C 0.291 3.709 4 N -0.506 5.506 5 C 0.193 3.807 6 C -0.111 4.111 7 C -0.184 4.184 8 C -0.053 4.053 9 C -0.123 4.123 10 C 0.439 3.561 11 O -0.597 6.597 12 N -0.560 5.560 13 C -0.302 4.302 14 H 0.104 0.896 15 C 0.023 3.977 16 N -0.900 5.900 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.269 1.269 21 C 0.192 3.808 22 C -0.111 4.111 23 N -0.530 5.530 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.393 0.607 35 H 0.272 0.728 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 -16.829 7.243 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.223 5.777 3 C -0.085 4.085 4 N -0.224 5.224 5 C 0.044 3.956 6 C -0.168 4.168 7 C -0.191 4.191 8 C -0.092 4.092 9 C -0.164 4.164 10 C 0.226 3.774 11 O -0.483 6.483 12 N -0.196 5.196 13 C -0.432 4.432 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.541 5.541 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.044 3.956 22 C -0.168 4.168 23 N -0.248 5.248 24 H 0.122 0.878 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.226 0.774 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.350 -18.347 7.733 20.380 hybrid contribution -0.589 2.504 -0.776 2.687 sum -4.939 -15.843 6.957 17.995 Atomic orbital electron populations 1.23517 0.94257 1.06061 1.07196 1.85705 1.06715 0.94097 1.91219 1.24728 0.87212 1.00165 0.96429 1.68306 1.21009 1.16566 1.16490 1.21650 0.97110 0.87650 0.89166 1.20891 0.89434 1.02324 1.04200 1.21452 0.93991 0.99140 1.04534 1.20251 1.04499 0.87160 0.97297 1.21435 1.02716 0.95492 0.96769 1.19839 0.84620 0.88248 0.84733 1.90517 1.56922 1.69534 1.31361 1.41917 1.61947 1.08942 1.06756 1.19722 1.45771 0.83270 0.94411 0.87863 1.25280 0.97274 1.00636 0.94679 1.69612 1.49819 1.37066 0.97600 0.85864 0.78589 0.82027 0.77855 1.20353 1.20893 1.19378 1.21575 0.94500 0.90271 0.89283 1.20878 0.94419 0.97367 1.04123 1.68538 1.34440 1.03866 1.18005 0.87820 0.89231 0.89159 0.89240 0.89125 0.90043 0.89559 0.89497 0.90511 0.90572 0.77383 0.91793 0.89316 0.90239 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.62 101.05 0.97 -0.18 16 2 S -0.01 -0.12 22.89 -107.50 -2.46 -2.58 16 3 C 0.29 4.19 7.85 -90.83 -0.71 3.47 16 4 N -0.51 -7.66 10.34 -9.67 -0.10 -7.76 16 5 C 0.19 2.71 6.82 -82.27 -0.56 2.15 16 6 C -0.11 -1.28 9.83 36.00 0.35 -0.93 16 7 C -0.18 -2.57 5.17 -104.34 -0.54 -3.11 16 8 C -0.05 -0.79 3.90 -27.89 -0.11 -0.89 16 9 C -0.12 -2.03 5.68 -27.88 -0.16 -2.19 16 10 C 0.44 9.83 7.78 -10.99 -0.09 9.74 16 11 O -0.60 -15.29 15.56 5.55 0.09 -15.20 16 12 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 16 13 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 14 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 16 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 17 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C 0.19 2.60 6.82 -82.27 -0.56 2.04 16 22 C -0.11 -1.21 9.83 36.00 0.35 -0.86 16 23 N -0.53 -7.41 9.08 -9.67 -0.09 -7.50 16 24 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.09 0.76 8.11 -51.91 -0.42 0.33 16 26 H 0.09 0.78 8.11 -51.92 -0.42 0.36 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 1.00 6.07 -51.93 -0.32 0.69 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.28 6.03 -51.93 -0.31 0.97 16 31 H 0.09 1.30 6.03 -51.93 -0.31 0.99 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.16 8.14 -51.92 -0.42 0.73 16 34 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.97 6.07 -51.93 -0.32 0.66 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -31.62 336.36 -8.03 -39.65 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.89 Total: 8.57 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.29 Total: 1.39 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.48 Total: -52.54 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.09 Total: -15.20 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.46 Total: -2.58 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.62 -8.03 -39.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058179605.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.800 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds