Wall clock time and date at job start Fri Apr 10 2020 17:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47072 * 2 1 4 4 C 1.53003 * 109.46864 * 120.00099 * 2 1 3 5 5 N 1.46897 * 109.47108 * 294.99642 * 4 2 1 6 6 C 1.47955 * 111.00054 * 170.00244 * 5 4 2 7 7 C 1.53939 * 86.18224 * 137.58387 * 6 5 4 8 8 O 1.42905 * 113.73287 * 90.63582 * 7 6 5 9 9 C 1.50692 * 113.73607 * 221.81520 * 7 6 5 10 10 H 1.08008 * 119.99948 * 358.10238 * 9 7 6 11 11 C 1.37883 * 120.00258 * 178.09614 * 9 7 6 12 12 N 1.31511 * 119.99916 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00061 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47002 * 60.00607 * 13 11 9 15 15 H 1.48497 * 109.46780 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47229 * 300.00373 * 13 11 9 17 17 C 1.47960 * 111.00399 * 269.36426 * 5 4 2 18 18 C 1.50703 * 109.47051 * 239.99568 * 2 1 3 19 19 C 1.38264 * 119.99578 * 299.72737 * 18 2 1 20 20 C 1.38217 * 120.02403 * 179.76394 * 19 18 2 21 21 C 1.38235 * 120.01885 * 0.50975 * 20 19 18 22 22 C 1.38332 * 119.98045 * 359.74477 * 21 20 19 23 23 Cl 1.73599 * 120.01184 * 180.02562 * 22 21 20 24 24 C 1.38187 * 119.99019 * 119.99884 * 18 2 1 25 25 H 1.09005 * 109.47294 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47022 * 300.00086 * 1 2 3 27 27 H 1.08998 * 109.47202 * 60.00085 * 1 2 3 28 28 H 1.09002 * 109.47035 * 174.99997 * 4 2 1 29 29 H 1.08997 * 109.47480 * 54.99609 * 4 2 1 30 30 H 1.08994 * 113.76274 * 23.27033 * 6 5 4 31 31 H 1.09006 * 113.85949 * 251.91032 * 6 5 4 32 32 H 0.96705 * 113.99788 * 180.02562 * 8 7 6 33 33 H 0.96994 * 120.00241 * 179.97438 * 12 11 9 34 34 H 1.09001 * 113.76006 * 108.09454 * 17 5 4 35 35 H 1.09007 * 113.75282 * 336.73498 * 17 5 4 36 36 H 1.08001 * 119.98396 * 359.97438 * 19 18 2 37 37 H 1.08002 * 119.98942 * 180.25225 * 20 19 18 38 38 H 1.07990 * 120.01088 * 179.72193 * 21 20 19 39 39 H 1.08001 * 120.01050 * 0.02562 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6514 0.0374 2.4456 6 6 1.9143 -0.7413 3.6759 7 6 2.4497 0.5738 4.2706 8 8 1.4548 1.3475 4.9442 9 6 3.7098 0.4050 5.0795 10 1 4.1330 -0.5786 5.2211 11 6 4.3227 1.5062 5.6389 12 7 3.8073 2.7038 5.4669 13 14 5.8844 1.2968 6.6423 14 1 6.9411 0.6911 5.7928 15 1 6.3406 2.6230 7.1304 16 1 5.6126 0.4098 7.8018 17 6 2.6982 1.0149 2.8169 18 6 2.0323 -0.7105 -1.2304 19 6 1.7029 -2.0359 -1.4462 20 6 2.1592 -2.6867 -2.5769 21 6 2.9540 -2.0159 -3.4876 22 6 3.2883 -0.6914 -3.2696 23 17 4.2858 0.1519 -4.4130 24 6 2.8267 -0.0388 -2.1400 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.1263 -0.7995 1.2056 29 1 1.6053 -1.7198 1.2952 30 1 2.6767 -1.5106 3.5542 31 1 1.0128 -1.1097 4.1656 32 1 1.7870 2.1747 5.3190 33 1 4.2382 3.4784 5.8607 34 1 2.4221 2.0506 2.6189 35 1 3.6900 0.7591 2.4438 36 1 1.0859 -2.5618 -0.7326 37 1 1.8982 -3.7208 -2.7470 38 1 3.3142 -2.5259 -4.3687 39 1 3.0880 0.9951 -1.9690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191919116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:35 Heat of formation + Delta-G solvation = -23.949441 kcal Electronic energy + Delta-G solvation = -21231.045165 eV Core-core repulsion = 17971.270697 eV Total energy + Delta-G solvation = -3259.774468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.108 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.05423 -40.25297 -37.63048 -36.67973 -35.15463 -34.10938 -31.80442 -30.82045 -29.43502 -27.46392 -26.86861 -25.10309 -23.76329 -23.15379 -20.92410 -20.45697 -19.16687 -18.00853 -17.12691 -16.90073 -16.65541 -16.33147 -15.88136 -15.76898 -15.29265 -14.84024 -14.71068 -14.41493 -14.34576 -13.81478 -13.52150 -13.40064 -13.24470 -13.00323 -12.74101 -12.67516 -12.57087 -12.44801 -12.26632 -12.19934 -12.13392 -11.82794 -11.59543 -11.44071 -11.12133 -10.62787 -10.10903 -9.87838 -9.64256 -9.50738 -8.24322 -6.42599 0.18893 0.30416 1.13481 1.42102 1.43315 1.51321 2.36809 2.64871 2.96523 3.13293 3.67529 3.78005 3.95725 4.02628 4.15542 4.27433 4.32683 4.33620 4.36158 4.42547 4.51966 4.54258 4.72051 4.79785 4.85800 4.91203 4.97972 5.07226 5.16220 5.18743 5.25791 5.35588 5.41082 5.49420 5.54795 5.64818 5.74917 5.87127 5.99141 6.34971 6.62585 7.30624 7.51996 8.79943 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.018701 B = 0.003505 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.884649 B = 7987.102713 C = 8735.214209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.038 4.038 3 H 0.060 0.940 4 C 0.032 3.968 5 N -0.471 5.471 6 C 0.018 3.982 7 C 0.217 3.783 8 O -0.583 6.583 9 C -0.564 4.564 10 H 0.063 0.937 11 C 0.029 3.971 12 N -0.918 5.918 13 Si 0.964 3.036 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.271 1.271 17 C -0.001 4.001 18 C -0.065 4.065 19 C -0.113 4.113 20 C -0.100 4.100 21 C -0.120 4.120 22 C -0.043 4.043 23 Cl -0.077 7.077 24 C -0.124 4.124 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.030 0.970 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.381 0.619 33 H 0.273 0.727 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.142 0.858 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.205 -9.196 -17.210 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.057 4.057 3 H 0.079 0.921 4 C -0.097 4.097 5 N -0.193 5.193 6 C -0.111 4.111 7 C 0.177 3.823 8 O -0.393 6.393 9 C -0.602 4.602 10 H 0.081 0.919 11 C -0.171 4.171 12 N -0.558 5.558 13 Si 0.789 3.211 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.196 1.196 17 C -0.130 4.130 18 C -0.066 4.066 19 C -0.131 4.131 20 C -0.118 4.118 21 C -0.139 4.139 22 C -0.070 4.070 23 Cl -0.048 7.048 24 C -0.143 4.143 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.234 0.766 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.160 0.840 37 H 0.180 0.820 38 H 0.168 0.832 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.144 -9.203 -17.614 20.121 hybrid contribution 2.234 0.743 0.759 2.474 sum -0.910 -8.460 -16.856 18.882 Atomic orbital electron populations 1.21646 0.92705 1.02436 1.01525 1.19940 0.97381 0.98147 0.90190 0.92136 1.22709 0.97901 0.97921 0.91157 1.68367 1.40461 1.09653 1.00866 1.24041 0.99725 0.96160 0.91159 1.20118 0.85878 0.88272 0.88076 1.86025 1.39114 1.38875 1.75332 1.21913 1.09681 0.94318 1.34300 0.91855 1.25781 1.00516 0.94601 0.96207 1.69498 1.41847 0.99059 1.45413 0.85524 0.79167 0.77503 0.78940 1.19602 1.20565 1.19628 1.24462 0.92427 0.96430 0.99717 1.19854 0.96580 0.94910 0.95216 1.21371 0.99862 0.93587 0.98299 1.21450 0.96133 1.01288 0.92904 1.21326 0.99088 0.92091 1.01347 1.21043 0.98724 0.94271 0.92926 1.98362 1.68474 1.78195 1.59819 1.21060 0.98852 1.00734 0.93676 0.91550 0.92743 0.92508 0.95167 0.89714 0.90642 0.90365 0.76591 0.91711 0.92906 0.92871 0.84001 0.82040 0.83164 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.90 71.98 0.64 -2.55 16 2 C -0.04 -1.04 2.75 -11.54 -0.03 -1.07 16 3 H 0.06 1.89 7.88 -2.39 -0.02 1.87 16 4 C 0.03 1.00 3.92 86.30 0.34 1.34 16 5 N -0.47 -18.68 5.61 -910.88 -5.11 -23.80 16 6 C 0.02 0.75 7.34 86.41 0.63 1.38 16 7 C 0.22 10.99 1.41 -10.90 -0.02 10.97 16 8 O -0.58 -31.81 13.50 -148.98 -2.01 -33.82 16 9 C -0.56 -30.10 8.62 25.60 0.22 -29.88 16 10 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 11 C 0.03 1.53 5.39 84.66 0.46 1.98 16 12 N -0.92 -49.55 11.19 21.45 0.24 -49.31 16 13 Si 0.96 41.54 29.54 68.60 2.03 43.56 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 17 C 0.00 -0.04 7.35 86.40 0.64 0.60 16 18 C -0.06 -1.55 4.78 -19.87 -0.09 -1.64 16 19 C -0.11 -2.20 8.76 22.27 0.20 -2.00 16 20 C -0.10 -1.59 10.04 22.26 0.22 -1.37 16 21 C -0.12 -2.12 9.83 22.29 0.22 -1.90 16 22 C -0.04 -0.94 6.32 22.33 0.14 -0.80 16 23 Cl -0.08 -1.63 28.96 -2.72 -0.08 -1.71 16 24 C -0.12 -3.03 9.46 22.29 0.21 -2.82 16 25 H 0.07 1.45 7.40 -2.38 -0.02 1.43 16 26 H 0.05 1.63 7.75 -2.39 -0.02 1.61 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.03 1.02 7.38 -2.39 -0.02 1.00 16 29 H 0.08 2.33 7.49 -2.39 -0.02 2.31 16 30 H 0.08 2.96 7.87 -2.39 -0.02 2.94 16 31 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 32 H 0.38 21.37 6.56 -74.05 -0.49 20.88 16 33 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 34 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.05 2.48 7.43 -2.38 -0.02 2.46 16 36 H 0.14 2.33 7.16 -2.91 -0.02 2.31 16 37 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.15 1.97 8.06 -2.92 -0.02 1.95 16 39 H 0.12 3.10 7.95 -2.91 -0.02 3.08 16 Total: -1.00 -57.90 336.52 -0.60 -58.50 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.57 Total: 34.34 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 3.77 Total: -27.76 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -4.87 Total: -73.11 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -2.01 Total: -33.82 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -57.90 -0.60 -58.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191919116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.553 kcal (2) G-P(sol) polarization free energy of solvation -57.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds