Wall clock time and date at job start Fri Apr 10 2020 17:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47157 * 2 1 4 4 C 1.50691 * 109.47383 * 120.00748 * 2 1 3 5 5 H 1.07998 * 120.00432 * 119.99822 * 4 2 1 6 6 C 1.37878 * 119.99856 * 300.00206 * 4 2 1 7 7 N 1.31517 * 120.00040 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99939 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47482 * 59.99475 * 8 6 4 10 10 H 1.48504 * 109.46881 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46844 * 299.99109 * 8 6 4 12 12 N 1.46903 * 109.46954 * 240.01040 * 2 1 3 13 13 C 1.48530 * 111.00068 * 177.39713 * 12 2 1 14 14 C 1.55103 * 103.28313 * 200.32747 * 13 12 2 15 15 C 1.54587 * 102.84517 * 37.30697 * 14 13 12 16 16 H 1.08999 * 110.31238 * 97.11746 * 15 14 13 17 17 O 1.42903 * 110.30975 * 219.18365 * 15 14 13 18 18 C 1.35920 * 117.00102 * 272.33280 * 17 15 14 19 19 C 1.38711 * 120.05974 * 5.87665 * 18 17 15 20 20 C 1.38149 * 119.95933 * 179.74633 * 19 18 17 21 21 C 1.38283 * 120.07603 * 0.27463 * 20 19 18 22 22 C 1.38253 * 120.11854 * 359.97438 * 21 20 19 23 23 C 1.38260 * 120.04247 * 359.96294 * 22 21 20 24 24 Cl 1.73596 * 120.03643 * 180.02562 * 23 22 21 25 25 C 1.47904 * 111.00447 * 59.99515 * 12 2 1 26 26 H 1.08999 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46651 * 299.99588 * 1 2 3 28 28 H 1.09001 * 109.47349 * 59.98978 * 1 2 3 29 29 H 0.97002 * 119.99775 * 180.02562 * 7 6 4 30 30 H 1.09002 * 110.66990 * 318.71177 * 13 12 2 31 31 H 1.09005 * 110.67114 * 81.84076 * 13 12 2 32 32 H 1.09000 * 110.71258 * 278.99285 * 14 13 12 33 33 H 1.09004 * 110.80913 * 155.66207 * 14 13 12 34 34 H 1.08001 * 120.01707 * 0.02562 * 19 18 17 35 35 H 1.07997 * 119.96537 * 180.24834 * 20 19 18 36 36 H 1.08002 * 119.94030 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.97583 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.91201 * 26.49656 * 25 12 2 39 39 H 1.08998 * 110.07868 * 265.29145 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 0.9435 0.8299 2.6034 8 14 2.3226 -1.1200 4.0077 9 1 3.8076 -1.1195 4.0075 10 1 1.8280 -0.4198 5.2203 11 1 1.8281 -2.5202 4.0078 12 7 2.0197 -0.6923 -1.1996 13 6 3.5031 -0.6578 -1.2659 14 6 3.7992 -0.9270 -2.7644 15 6 2.6604 -0.1666 -3.4817 16 1 3.0058 0.8154 -3.8047 17 8 2.1902 -0.9191 -4.6019 18 6 2.8327 -0.7314 -5.7849 19 6 3.9679 0.0638 -5.8405 20 6 4.6223 0.2490 -7.0430 21 6 4.1437 -0.3529 -8.1923 22 6 3.0096 -1.1420 -8.1415 23 6 2.3516 -1.3317 -6.9404 24 17 0.9279 -2.3230 -6.8766 25 6 1.5454 -0.0215 -2.4295 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 0.7095 1.1614 3.4845 30 1 3.8788 0.3219 -0.9707 31 1 3.9344 -1.4404 -0.6416 32 1 3.7477 -1.9938 -2.9820 33 1 4.7710 -0.5213 -3.0460 34 1 4.3425 0.5343 -4.9434 35 1 5.5084 0.8648 -7.0856 36 1 4.6568 -0.2064 -9.1313 37 1 2.6376 -1.6106 -9.0405 38 1 1.3592 1.0335 -2.2288 39 1 0.6327 -0.4980 -2.7874 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221674965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:40 Heat of formation + Delta-G solvation = -9.454168 kcal Electronic energy + Delta-G solvation = -21361.595373 eV Core-core repulsion = 18102.449468 eV Total energy + Delta-G solvation = -3259.145906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44943 -38.51702 -36.87839 -36.38135 -33.59515 -31.27660 -30.86758 -30.04280 -28.17662 -27.50586 -25.06916 -23.31625 -22.60482 -21.48929 -20.53864 -19.37781 -18.54185 -16.57782 -16.44593 -16.11346 -15.59652 -15.01415 -14.91118 -14.27210 -14.15503 -13.86315 -13.44290 -13.29639 -12.93422 -12.53722 -12.14803 -12.02762 -11.89744 -11.58284 -11.42192 -11.24880 -11.19226 -10.92664 -10.82792 -10.71256 -10.54085 -10.41000 -10.14108 -10.09444 -9.84073 -9.07632 -8.95608 -8.44811 -8.27282 -7.35256 -6.03479 -4.08283 0.95059 1.15957 2.13846 3.13019 3.31199 3.35625 3.38840 3.44754 4.38584 4.56481 4.62988 4.71584 4.88766 4.93735 5.04684 5.08738 5.22526 5.26208 5.32500 5.50831 5.69411 5.80706 5.92318 5.98681 6.02258 6.09175 6.20983 6.28704 6.48855 6.50665 6.55672 6.79012 7.00770 7.03184 7.36033 7.42536 7.57547 7.80223 8.08948 8.27024 8.50000 8.97540 9.56970 11.03426 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.029361 B = 0.003346 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.406303 B = 8366.873798 C = 8801.382745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.204 3.796 3 H 0.001 0.999 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.506 5.506 13 C 0.054 3.946 14 C -0.148 4.148 15 C 0.074 3.926 16 H 0.075 0.925 17 O -0.288 6.288 18 C 0.150 3.850 19 C -0.201 4.201 20 C -0.075 4.075 21 C -0.156 4.156 22 C -0.075 4.075 23 C -0.075 4.075 24 Cl -0.058 7.058 25 C 0.044 3.956 26 H 0.035 0.965 27 H 0.086 0.914 28 H 0.007 0.993 29 H 0.261 0.739 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.051 0.949 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.263 -0.522 -20.144 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.098 3.902 3 H 0.019 0.981 4 C -0.542 4.542 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.232 5.232 13 C -0.074 4.074 14 C -0.186 4.186 15 C 0.017 3.983 16 H 0.093 0.907 17 O -0.200 6.200 18 C 0.102 3.898 19 C -0.220 4.220 20 C -0.093 4.093 21 C -0.174 4.174 22 C -0.093 4.093 23 C -0.103 4.103 24 Cl -0.029 7.029 25 C -0.084 4.084 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.069 0.931 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.666 -1.142 -19.870 20.693 hybrid contribution 0.613 0.530 0.914 1.221 sum 6.279 -0.612 -18.956 19.978 Atomic orbital electron populations 1.21824 0.97494 0.99839 1.00001 1.19464 0.92652 0.91928 0.86131 0.98136 1.21046 1.31160 1.12342 0.89629 0.92004 1.24931 0.95168 0.95064 0.99042 1.69881 1.36868 1.22996 1.23579 0.86563 0.79053 0.79810 0.81999 1.20334 1.21363 1.20168 1.64957 1.05640 1.50945 1.01640 1.22959 0.90604 1.00727 0.93136 1.23165 0.96591 1.01755 0.97060 1.23586 0.96387 0.93703 0.84605 0.90711 1.86311 1.55639 1.62902 1.15172 1.18807 0.91300 0.93797 0.85870 1.21354 0.97072 1.03470 1.00106 1.21048 0.98831 0.97624 0.91845 1.20976 0.97396 1.00125 0.98907 1.20901 0.94870 0.97862 0.95707 1.20249 0.94181 1.02744 0.93096 1.98373 1.37638 1.68158 1.98735 1.22822 0.97214 0.98188 0.90193 0.94553 0.89568 0.97395 0.92890 0.94117 0.89789 0.89804 0.91365 0.84409 0.85326 0.85222 0.84607 0.93105 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.87 37.16 0.33 -2.95 16 2 C 0.20 5.11 1.74 -68.87 -0.12 4.99 16 3 H 0.00 0.03 8.00 -51.93 -0.42 -0.39 16 4 C -0.50 -13.68 8.13 -34.44 -0.28 -13.96 16 5 H 0.06 1.68 7.12 -52.49 -0.37 1.31 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.51 -10.84 5.10 -223.78 -1.14 -11.98 16 13 C 0.05 1.01 5.83 -1.81 -0.01 1.00 16 14 C -0.15 -2.21 6.40 -24.78 -0.16 -2.37 16 15 C 0.07 1.11 2.84 -25.38 -0.07 1.04 16 16 H 0.08 0.99 6.35 -51.93 -0.33 0.66 16 17 O -0.29 -4.48 9.19 -19.49 -0.18 -4.66 16 18 C 0.15 2.02 6.64 -39.19 -0.26 1.76 16 19 C -0.20 -2.26 8.81 -39.44 -0.35 -2.61 16 20 C -0.08 -0.69 10.04 -39.60 -0.40 -1.08 16 21 C -0.16 -1.34 10.04 -39.56 -0.40 -1.74 16 22 C -0.07 -0.74 9.83 -39.57 -0.39 -1.13 16 23 C -0.08 -0.95 6.33 -39.36 -0.25 -1.20 16 24 Cl -0.06 -0.76 28.50 -51.86 -1.48 -2.23 16 25 C 0.04 0.81 5.22 -2.75 -0.01 0.80 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 28 H 0.01 0.16 7.06 -51.93 -0.37 -0.21 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.04 0.77 7.96 -51.93 -0.41 0.36 16 31 H 0.08 1.62 7.54 -51.93 -0.39 1.23 16 32 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 33 H 0.07 0.84 7.65 -51.93 -0.40 0.44 16 34 H 0.14 1.43 5.46 -52.49 -0.29 1.14 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 37 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.05 0.93 7.52 -51.93 -0.39 0.54 16 39 H 0.08 1.60 7.96 -51.93 -0.41 1.18 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -29.06 328.41 -10.04 -39.10 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.34 Total: -0.78 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -2.46 Total: -15.91 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.51 Total: -36.66 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.18 Total: -4.66 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.48 Total: -2.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.06 -10.04 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221674965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.646 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds