Wall clock time and date at job start Fri Apr 10 2020 17:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47374 * 270.00041 * 3 2 1 5 5 H 1.48496 * 109.47349 * 30.00388 * 3 2 1 6 6 H 1.48504 * 109.47003 * 150.00144 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 162.55448 * 7 2 1 9 9 N 1.36935 * 120.00405 * 342.82520 * 7 2 1 10 10 C 1.46962 * 120.59568 * 151.29568 * 9 7 2 11 11 C 1.53815 * 108.39611 * 124.76060 * 10 9 7 12 12 N 1.46958 * 108.58318 * 49.63518 * 11 10 9 13 13 C 1.34783 * 120.59366 * 124.62417 * 12 11 10 14 14 O 1.21282 * 119.99627 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00050 * 0.02562 * 13 12 11 16 16 C 1.52996 * 109.47218 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47218 * 179.97438 * 16 15 13 18 18 N 1.29024 * 124.91675 * 89.70035 * 17 16 15 19 19 C 1.31790 * 117.12422 * 179.81530 * 18 17 16 20 20 C 1.33638 * 114.49655 * 0.46736 * 19 18 17 21 21 S 1.70978 * 124.91456 * 269.99706 * 17 16 15 22 22 C 1.46967 * 118.81111 * 304.64454 * 12 11 10 23 23 C 1.46972 * 120.59045 * 331.57419 * 9 7 2 24 24 H 0.96999 * 119.99847 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.60973 * 244.53779 * 10 9 7 26 26 H 1.08995 * 109.61395 * 5.04923 * 10 9 7 27 27 H 1.09002 * 109.74120 * 289.84419 * 11 10 9 28 28 H 1.09006 * 109.67017 * 169.38761 * 11 10 9 29 29 H 1.09000 * 109.47172 * 299.99774 * 15 13 12 30 30 H 1.09000 * 109.46925 * 59.99612 * 15 13 12 31 31 H 1.09003 * 109.47360 * 300.00129 * 16 15 13 32 32 H 1.09003 * 109.47289 * 59.99479 * 16 15 13 33 33 H 1.08002 * 122.74912 * 180.22206 * 19 18 17 34 34 H 1.08004 * 126.03689 * 179.72163 * 20 19 18 35 35 H 1.08996 * 109.60899 * 295.48089 * 22 12 11 36 36 H 1.09006 * 109.74993 * 175.05419 * 22 12 11 37 37 H 1.09002 * 109.60606 * 354.94337 * 23 9 7 38 38 H 1.08999 * 109.60696 * 115.28811 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2810 9 7 1.3714 -2.3617 0.3491 10 6 1.8065 -3.6517 -0.2045 11 6 2.1101 -4.6040 0.9646 12 7 0.9732 -4.5802 1.8954 13 6 0.3438 -5.7215 2.2389 14 8 -0.5936 -5.6892 3.0077 15 6 0.8049 -7.0375 1.6677 16 6 -0.0713 -8.1660 2.2150 17 6 0.3894 -9.4820 1.6433 18 7 1.2837 -10.2454 2.1745 19 6 1.5673 -11.3675 1.5440 20 6 0.8805 -11.5565 0.4132 21 16 -0.1922 -10.1762 0.1930 22 6 0.5346 -3.2895 2.4448 23 6 0.2343 -2.3379 1.2801 24 1 -0.4850 0.8401 0.0004 25 1 1.0134 -4.0701 -0.8241 26 1 2.7052 -3.5079 -0.8042 27 1 3.0127 -4.2771 1.4809 28 1 2.2518 -5.6163 0.5859 29 1 0.7253 -7.0098 0.5809 30 1 1.8425 -7.2132 1.9516 31 1 0.0087 -8.1937 3.3017 32 1 -1.1090 -7.9905 1.9315 33 1 2.2978 -12.0742 1.9091 34 1 0.9681 -12.4052 -0.2490 35 1 1.3249 -2.8690 3.0665 36 1 -0.3656 -3.4307 3.0431 37 1 0.0947 -1.3262 1.6610 38 1 -0.6687 -2.6620 0.7629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265770397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:44 Heat of formation + Delta-G solvation = 36.463759 kcal Electronic energy + Delta-G solvation = -21179.953457 eV Core-core repulsion = 17957.135160 eV Total energy + Delta-G solvation = -3222.818297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01316 -39.51900 -36.88644 -34.03389 -33.87751 -31.20558 -30.64254 -29.60188 -27.22227 -26.02095 -23.85979 -23.33842 -22.49136 -20.48514 -20.04988 -18.54756 -18.25822 -17.11760 -16.20576 -15.72950 -15.53196 -15.44975 -14.80686 -14.56000 -14.20173 -13.79511 -13.66852 -13.44046 -13.25822 -13.12149 -12.76304 -12.23812 -12.17743 -11.72683 -11.67913 -11.23660 -11.23388 -10.82859 -10.74528 -10.59360 -10.27390 -9.98881 -9.87526 -9.84506 -9.64092 -9.43188 -9.07978 -8.61102 -8.25746 -6.73380 -5.86852 -3.32271 0.46860 1.13793 1.53613 2.60168 2.94952 3.33033 3.38803 3.40884 3.43374 3.96172 4.42532 4.64824 4.88102 4.90932 5.01352 5.07847 5.24042 5.24137 5.30913 5.46169 5.70402 5.71675 5.75097 5.87404 5.89157 5.98698 6.12915 6.32502 6.36905 6.48034 6.66997 6.84559 7.23939 7.52022 7.52795 7.70526 7.88750 8.34323 8.52571 9.10028 9.72777 10.29406 11.20586 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.034948 B = 0.003024 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.993811 B = 9257.830105 C = 9521.409775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.088 3.912 12 N -0.595 5.595 13 C 0.511 3.489 14 O -0.556 6.556 15 C -0.132 4.132 16 C -0.029 4.029 17 C 0.058 3.942 18 N -0.476 5.476 19 C 0.039 3.961 20 C -0.267 4.267 21 S 0.124 5.876 22 C 0.087 3.913 23 C 0.158 3.842 24 H 0.256 0.744 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 -20.113 0.553 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.037 4.037 12 N -0.327 5.327 13 C 0.299 3.701 14 O -0.436 6.436 15 C -0.173 4.173 16 C -0.070 4.070 17 C -0.219 4.219 18 N -0.190 5.190 19 C -0.112 4.112 20 C -0.406 4.406 21 S 0.378 5.622 22 C -0.037 4.037 23 C 0.032 3.968 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.192 0.808 34 H 0.193 0.807 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.022 -19.459 0.684 19.498 hybrid contribution 1.208 0.126 0.082 1.217 sum 2.229 -19.333 0.766 19.477 Atomic orbital electron populations 1.70021 1.05338 1.25791 1.53275 1.25090 0.95293 0.98598 1.00517 0.86280 0.79178 0.83439 0.77753 1.21334 1.21472 1.20400 1.19173 0.92713 0.84648 1.42258 0.91494 1.44018 1.36574 1.01611 1.49219 1.21365 0.98434 0.87444 0.92443 1.22489 0.88459 1.00328 0.92455 1.48064 1.32496 1.06971 1.45201 1.20358 0.82867 0.85329 0.81587 1.90658 1.29053 1.86987 1.36879 1.21628 1.01516 0.92031 1.02170 1.20024 0.99717 0.85028 1.02259 1.27212 0.97164 1.01387 0.96168 1.66314 1.15032 1.04582 1.33101 1.21837 1.01557 0.95112 0.92702 1.27099 1.04561 1.04644 1.04313 1.84184 1.39764 1.13832 1.24470 1.22506 0.99878 0.82813 0.98454 1.21191 0.88989 0.98609 0.88002 0.93425 0.95844 0.91463 0.91480 0.90935 0.88757 0.88483 0.87884 0.88678 0.80812 0.80658 0.92189 0.90072 0.88264 0.95851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 11.20 55.49 0.62 -24.91 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.81 9.57 -15.06 -0.14 -6.95 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.23 2.96 -171.76 -0.51 -14.74 16 10 C 0.13 2.52 6.70 -3.37 -0.02 2.50 16 11 C 0.09 1.38 6.52 -3.37 -0.02 1.36 16 12 N -0.60 -10.54 2.95 -172.21 -0.51 -11.05 16 13 C 0.51 8.51 7.70 -10.98 -0.08 8.42 16 14 O -0.56 -10.88 15.39 5.56 0.09 -10.80 16 15 C -0.13 -1.62 4.02 -27.89 -0.11 -1.74 16 16 C -0.03 -0.34 5.09 -27.89 -0.14 -0.48 16 17 C 0.06 0.66 6.64 -13.46 -0.09 0.57 16 18 N -0.48 -5.70 10.54 -11.86 -0.13 -5.82 16 19 C 0.04 0.37 11.35 -19.18 -0.22 0.15 16 20 C -0.27 -2.16 11.37 29.12 0.33 -1.83 16 21 S 0.12 1.13 23.18 -107.50 -2.49 -1.36 16 22 C 0.09 1.73 6.59 -3.59 -0.02 1.71 16 23 C 0.16 3.73 5.51 -3.59 -0.02 3.71 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 1.23 7.93 -51.93 -0.41 0.81 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.07 0.89 5.91 -51.93 -0.31 0.59 16 29 H 0.09 1.04 7.72 -51.93 -0.40 0.64 16 30 H 0.10 1.11 7.91 -51.93 -0.41 0.70 16 31 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 32 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 33 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.18 0.92 8.06 -52.48 -0.42 0.49 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.62 7.00 -51.93 -0.36 1.26 16 37 H 0.10 2.59 6.00 -51.93 -0.31 2.27 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 326.65 15.07 4.92 4.92 Total: -1.00 -31.48 326.65 -8.80 -40.28 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.13 Total: 0.02 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -0.63 Total: 7.43 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.52 Total: -56.52 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.49 Total: -1.36 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.48 -8.80 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265770397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.740 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds