Wall clock time and date at job start Fri Apr 10 2020 17:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00131 * 2 1 4 4 H 1.48502 * 109.47408 * 239.99877 * 3 2 1 5 5 H 1.48499 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47123 * 120.00009 * 3 2 1 7 7 C 1.38815 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99988 * 189.63021 * 7 2 1 9 9 N 1.36931 * 120.00025 * 9.63316 * 7 2 1 10 10 C 1.46964 * 120.59419 * 223.39498 * 9 7 2 11 11 C 1.53369 * 108.63734 * 235.20294 * 10 9 7 12 12 N 1.46958 * 108.63685 * 310.57876 * 11 10 9 13 13 C 1.34782 * 120.59525 * 235.20064 * 12 11 10 14 14 O 1.21572 * 119.99809 * 6.79223 * 13 12 11 15 15 C 1.47710 * 119.99987 * 186.78941 * 13 12 11 16 16 C 1.41502 * 126.51888 * 186.70317 * 15 13 12 17 17 C 1.35358 * 105.50548 * 180.16072 * 16 15 13 18 18 N 1.48022 * 126.38850 * 179.90093 * 17 16 15 19 19 O 1.21798 * 120.00111 * 179.71567 * 18 17 16 20 20 O 1.21800 * 119.99841 * 359.43642 * 18 17 16 21 21 N 1.35042 * 107.22759 * 359.63638 * 17 16 15 22 22 H 0.96995 * 124.88485 * 180.21861 * 21 17 16 23 23 N 1.28464 * 110.23041 * 0.24380 * 21 17 16 24 24 C 1.46964 * 118.81196 * 55.47451 * 12 11 10 25 25 C 1.46967 * 120.59269 * 43.37487 * 9 7 2 26 26 H 0.96998 * 119.99655 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.60616 * 115.46254 * 10 9 7 28 28 H 1.08996 * 109.61362 * 354.95162 * 10 9 7 29 29 H 1.09004 * 109.61327 * 190.83127 * 11 10 9 30 30 H 1.09007 * 109.60757 * 70.32503 * 11 10 9 31 31 H 1.08010 * 127.24502 * 0.04144 * 16 15 13 32 32 H 1.09008 * 109.60957 * 64.26989 * 24 12 11 33 33 H 1.09002 * 109.61329 * 184.77840 * 24 12 11 34 34 H 1.08996 * 109.61028 * 244.53648 * 25 9 7 35 35 H 1.08992 * 109.61162 * 5.05552 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0789 -1.2088 0.1559 9 7 1.3401 -2.3796 -0.1995 10 6 1.6385 -3.5587 0.6253 11 6 1.9977 -4.7269 -0.3013 12 7 0.9668 -4.8339 -1.3432 13 6 0.3072 -5.9929 -1.5391 14 8 0.4725 -6.9232 -0.7740 15 6 -0.6165 -6.1327 -2.6832 16 6 -1.4736 -7.2278 -2.9445 17 6 -2.1201 -6.9156 -4.0920 18 7 -3.1291 -7.7473 -4.7857 19 8 -3.6440 -7.3481 -5.8148 20 8 -3.4408 -8.8330 -4.3301 21 7 -1.6773 -5.7012 -4.4828 22 1 -1.9763 -5.2307 -5.2766 23 7 -0.8025 -5.2589 -3.6524 24 6 0.6723 -3.6564 -2.1718 25 6 0.3092 -2.4866 -1.2415 26 1 -0.4849 0.8401 0.0004 27 1 0.7635 -3.8197 1.2206 28 1 2.4800 -3.3416 1.2832 29 1 2.0341 -5.6522 0.2738 30 1 2.9674 -4.5423 -0.7636 31 1 -1.5865 -8.1250 -2.3539 32 1 1.5498 -3.3974 -2.7643 33 1 -0.1668 -3.8745 -2.8324 34 1 -0.6604 -2.6713 -0.7791 35 1 0.2729 -1.5614 -1.8165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286606360.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:47 Heat of formation + Delta-G solvation = 89.807684 kcal Electronic energy + Delta-G solvation = -23625.133694 eV Core-core repulsion = 19858.335348 eV Total energy + Delta-G solvation = -3766.798346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.111 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.83988 -42.26767 -39.58582 -37.10817 -36.90329 -34.07012 -32.83735 -32.39403 -31.23159 -30.30407 -27.28596 -27.00433 -24.83910 -23.34779 -22.81419 -22.37468 -21.08886 -20.36830 -19.08522 -18.66084 -18.24592 -17.98664 -16.65506 -16.37467 -15.88802 -15.58450 -14.80141 -14.74965 -14.61998 -13.79863 -13.70702 -13.46576 -13.36586 -12.55579 -12.36367 -12.10691 -11.91443 -11.64932 -11.54565 -11.11042 -10.88554 -10.81925 -10.59112 -10.47675 -10.36149 -10.22221 -10.20276 -10.03233 -9.67907 -8.63431 -8.42852 -6.58182 -5.93443 -3.56431 -0.46011 0.39851 1.00587 1.42721 2.06644 3.06782 3.18249 3.28618 3.34462 3.35299 3.65872 4.08488 4.35987 4.45932 4.78390 5.24623 5.26068 5.31550 5.55410 5.74892 5.78637 5.85604 5.99400 6.06367 6.13060 6.28073 6.36900 6.73065 6.80725 6.89256 7.06132 7.15275 7.25129 7.63320 7.70106 8.18687 8.39953 9.06192 9.62690 10.29893 11.12360 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.026116 B = 0.003679 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.869549 B = 7608.842874 C = 8400.001919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.021 3.979 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.271 4.271 8 H 0.061 0.939 9 N -0.587 5.587 10 C 0.131 3.869 11 C 0.095 3.905 12 N -0.575 5.575 13 C 0.591 3.409 14 O -0.538 6.538 15 C 0.008 3.992 16 C -0.068 4.068 17 C 0.046 3.954 18 N 0.057 4.943 19 O -0.157 6.157 20 O -0.119 6.119 21 N -0.347 5.347 22 H 0.461 0.539 23 N -0.173 5.173 24 C 0.060 3.940 25 C 0.165 3.835 26 H 0.257 0.743 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.194 0.806 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.025 0.975 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 -11.203 -9.126 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.181 4.181 3 Si 0.733 3.267 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.401 4.401 8 H 0.078 0.922 9 N -0.310 5.310 10 C 0.005 3.995 11 C -0.029 4.029 12 N -0.305 5.305 13 C 0.375 3.625 14 O -0.415 6.415 15 C -0.150 4.150 16 C -0.098 4.098 17 C -0.160 4.160 18 N 0.580 4.420 19 O -0.370 6.370 20 O -0.338 6.338 21 N -0.069 5.069 22 H 0.309 0.691 23 N -0.015 5.015 24 C -0.064 4.064 25 C 0.038 3.962 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.212 0.788 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.044 0.956 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.984 -10.122 -8.735 13.516 hybrid contribution -0.394 0.442 -0.488 0.767 sum -2.378 -9.680 -9.223 13.580 Atomic orbital electron populations 1.69966 1.05570 1.26090 1.51948 1.25494 0.95321 0.98883 0.98378 0.86384 0.79031 0.82939 0.78387 1.20663 1.21525 1.20536 1.18999 0.90380 0.83403 1.47303 0.92190 1.43808 1.44125 1.08018 1.35089 1.21352 0.98942 0.87069 0.92178 1.22393 0.89419 1.01136 0.89918 1.47933 1.37110 1.10281 1.35188 1.16732 0.79795 0.83453 0.82499 1.90796 1.65362 1.39889 1.45425 1.22294 1.02547 0.92489 0.97681 1.21684 0.93641 1.01353 0.93132 1.21931 1.02946 0.91330 0.99800 1.42385 0.99161 1.00476 1.00022 1.94608 1.54467 1.76371 1.11549 1.94638 1.64375 1.05757 1.69063 1.43707 1.28956 1.11808 1.22438 0.69107 1.74138 1.05134 1.21344 1.00877 1.23467 1.01974 0.86443 0.94542 1.21133 0.91230 0.94496 0.89307 0.93305 0.95685 0.91171 0.89606 0.91366 0.78839 0.91507 0.87767 0.95650 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 11.92 55.49 0.66 -24.16 16 2 C 0.02 0.54 5.03 -17.43 -0.09 0.46 16 3 Si 0.90 20.54 29.56 -169.99 -5.03 15.51 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.27 -7.03 9.41 -15.06 -0.14 -7.17 16 8 H 0.06 1.53 7.85 -52.48 -0.41 1.12 16 9 N -0.59 -13.90 2.87 -171.77 -0.49 -14.39 16 10 C 0.13 2.66 6.67 -3.60 -0.02 2.64 16 11 C 0.09 1.63 6.60 -3.60 -0.02 1.61 16 12 N -0.57 -9.91 2.94 -173.37 -0.51 -10.42 16 13 C 0.59 9.76 7.69 -12.39 -0.10 9.67 16 14 O -0.54 -9.89 16.35 5.30 0.09 -9.80 16 15 C 0.01 0.11 6.84 -82.76 -0.57 -0.45 16 16 C -0.07 -0.77 10.51 -39.37 -0.41 -1.19 16 17 C 0.05 0.49 8.15 -144.52 -1.18 -0.69 16 18 N 0.06 0.64 4.45 32.90 0.15 0.78 16 19 O -0.16 -1.75 19.25 -29.46 -0.57 -2.32 16 20 O -0.12 -1.40 19.04 -29.46 -0.56 -1.96 16 21 N -0.35 -3.25 6.82 32.85 0.22 -3.03 16 22 H 0.46 2.79 8.96 -190.45 -1.71 1.08 16 23 N -0.17 -2.08 8.68 33.42 0.29 -1.79 16 24 C 0.06 1.04 6.35 -3.37 -0.02 1.02 16 25 C 0.17 3.61 5.47 -3.36 -0.02 3.59 16 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 29 H 0.09 1.41 6.99 -51.93 -0.36 1.05 16 30 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 31 H 0.19 1.91 8.06 -52.48 -0.42 1.49 16 32 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 33 H 0.11 1.60 4.06 -80.39 -0.33 1.27 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.95 6.94 -51.93 -0.36 1.59 16 LS Contribution 307.60 15.07 4.64 4.64 Total: -1.00 -30.15 307.60 -8.51 -38.66 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.83 Total: -1.20 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -2.57 Total: 9.49 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.32 Total: -53.01 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.04 Total: -14.08 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.15 -8.51 -38.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286606360.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.467 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds