Wall clock time and date at job start Fri Apr 10 2020 17:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38275 * 119.92669 * 2 1 4 4 C 1.38141 * 120.11381 * 179.97438 * 3 2 1 5 5 C 1.38803 * 119.95898 * 359.97438 * 4 3 2 6 6 N 1.40068 * 120.08259 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00183 * 24.76532 * 6 5 4 8 8 O 1.21591 * 119.99777 * 5.64494 * 7 6 5 9 9 N 1.34773 * 120.00146 * 185.64010 * 7 6 5 10 10 C 1.46503 * 119.99879 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.46936 * 180.02562 * 10 9 7 12 12 O 1.21295 * 120.00061 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99799 * 180.02562 * 11 10 9 14 14 C 1.37101 * 119.99684 * 179.97438 * 13 11 10 15 15 H 1.08000 * 120.00554 * 0.02562 * 14 13 11 16 16 C 1.38952 * 119.99808 * 179.97438 * 14 13 11 17 17 N 1.31411 * 119.99826 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99846 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47235 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47146 * 120.00374 * 18 16 14 21 21 H 1.48510 * 109.46974 * 240.00057 * 18 16 14 22 22 C 1.39044 * 119.84043 * 359.97438 * 5 4 3 23 23 F 1.35100 * 120.05606 * 179.97438 * 22 5 4 24 24 C 1.38277 * 119.92086 * 180.20468 * 2 1 3 25 25 H 1.09006 * 109.47090 * 90.00256 * 1 2 3 26 26 H 1.09002 * 109.47406 * 210.00095 * 1 2 3 27 27 H 1.09000 * 109.47561 * 330.00328 * 1 2 3 28 28 H 1.08000 * 119.93960 * 359.97438 * 3 2 1 29 29 H 1.08006 * 120.02317 * 179.97438 * 4 3 2 30 30 H 0.97004 * 119.99980 * 204.77751 * 6 5 4 31 31 H 0.96999 * 120.00052 * 0.02562 * 9 7 6 32 32 H 1.09005 * 109.47278 * 299.99760 * 10 9 7 33 33 H 1.08992 * 109.47311 * 59.99833 * 10 9 7 34 34 H 0.97001 * 120.00074 * 359.97438 * 13 11 10 35 35 H 0.97007 * 119.99553 * 179.97438 * 17 16 14 36 36 H 1.08003 * 119.97936 * 0.02860 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5782 1.2029 0.0005 5 6 4.2753 0.0026 0.0016 6 7 5.6760 0.0041 0.0016 7 6 6.3487 1.0652 0.4896 8 8 5.7442 1.9754 1.0229 9 7 7.6915 1.1172 0.3866 10 6 8.4228 2.2703 0.9175 11 6 9.8986 2.0836 0.6763 12 8 10.3001 1.0853 0.1164 13 7 10.7724 3.0254 1.0837 14 6 12.1151 2.8553 0.8647 15 1 12.4726 1.9669 0.3654 16 6 13.0159 3.8265 1.2841 17 7 12.5809 4.9078 1.8912 18 14 14.8452 3.5951 0.9851 19 1 15.0734 2.3040 0.2880 20 1 15.3540 4.7081 0.1439 21 1 15.5625 3.5896 2.2855 22 6 3.5798 -1.2014 0.0027 23 9 4.2539 -2.3722 0.0032 24 6 2.1967 -1.1985 -0.0043 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6546 2.1324 -0.0004 29 1 4.1156 2.1398 0.0001 30 1 6.1618 -0.7584 -0.3498 31 1 8.1737 0.3912 -0.0391 32 1 8.0849 3.1772 0.4160 33 1 8.2373 2.3566 1.9881 34 1 10.4513 3.8236 1.5318 35 1 13.2099 5.5857 2.1843 36 1 1.6550 -2.1328 -0.0081 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348088822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:02 Heat of formation + Delta-G solvation = -107.979363 kcal Electronic energy + Delta-G solvation = -22293.423893 eV Core-core repulsion = 18498.128895 eV Total energy + Delta-G solvation = -3795.294997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.95019 -41.83837 -40.36062 -39.61387 -36.43470 -36.14034 -35.44592 -33.40079 -32.47949 -31.54188 -29.42277 -27.34005 -26.19933 -24.20882 -22.89503 -21.90057 -21.40525 -20.15829 -19.85592 -18.96744 -17.87796 -17.56868 -17.28914 -16.88587 -16.66470 -16.62558 -16.36320 -15.82179 -15.73731 -15.25821 -15.13049 -14.81326 -14.40663 -14.28286 -14.01039 -13.79613 -13.56116 -13.14727 -12.92887 -12.88838 -12.66362 -12.46094 -12.43926 -12.11951 -11.59273 -11.54825 -11.16247 -10.58814 -10.33009 -10.10411 -9.83117 -8.97602 -8.52376 -6.02445 0.09078 0.23384 1.29128 1.34286 1.43313 1.57051 1.83132 1.91495 2.26959 2.64363 2.88408 3.14272 3.14928 3.16177 3.72478 3.94093 4.16438 4.22453 4.29991 4.38153 4.42414 4.48886 4.72132 4.93399 4.95649 5.05593 5.11294 5.19458 5.32701 5.37748 5.41901 5.59369 5.71665 5.90769 5.96823 6.46364 6.73323 7.02433 7.23736 7.42851 7.92796 8.64653 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.043992 B = 0.002493 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.324831 B =11230.603768 C =11782.991625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.079 4.079 3 C -0.106 4.106 4 C -0.121 4.121 5 C 0.117 3.883 6 N -0.674 5.674 7 C 0.708 3.292 8 O -0.601 6.601 9 N -0.716 5.716 10 C 0.141 3.859 11 C 0.433 3.567 12 O -0.625 6.625 13 N -0.558 5.558 14 C -0.336 4.336 15 H 0.086 0.914 16 C -0.011 4.011 17 N -0.915 5.915 18 Si 0.997 3.003 19 H -0.271 1.271 20 H -0.271 1.271 21 H -0.271 1.271 22 C 0.052 3.948 23 F -0.144 7.144 24 C -0.131 4.131 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.153 0.847 29 H 0.140 0.860 30 H 0.420 0.580 31 H 0.412 0.588 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.400 0.600 35 H 0.280 0.720 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.606 -8.117 -3.621 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.141 4.141 5 C 0.020 3.980 6 N -0.321 5.321 7 C 0.409 3.591 8 O -0.480 6.480 9 N -0.372 5.372 10 C 0.013 3.987 11 C 0.220 3.780 12 O -0.513 6.513 13 N -0.193 5.193 14 C -0.466 4.466 15 H 0.104 0.896 16 C -0.212 4.212 17 N -0.555 5.555 18 Si 0.820 3.180 19 H -0.195 1.195 20 H -0.196 1.196 21 H -0.196 1.196 22 C 0.030 3.970 23 F -0.123 7.123 24 C -0.150 4.150 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.170 0.830 29 H 0.157 0.843 30 H 0.257 0.743 31 H 0.250 0.750 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -22.621 -7.786 -3.429 24.168 hybrid contribution 1.807 -0.432 -0.126 1.862 sum -20.814 -8.219 -3.555 22.658 Atomic orbital electron populations 1.20847 0.87910 1.04196 1.03677 1.20107 0.98155 0.91362 0.98386 1.21311 0.92533 0.99449 0.99122 1.21409 0.95270 0.97089 1.00358 1.17780 0.81863 0.93907 1.04415 1.42336 1.04657 1.20617 1.64488 1.15766 0.81629 0.82629 0.79087 1.90863 1.67819 1.39278 1.50070 1.44702 1.04450 1.24747 1.63345 1.20678 0.87712 0.89306 1.01021 1.20395 0.88534 0.84808 0.84312 1.90481 1.80230 1.31562 1.49064 1.41827 1.06329 1.19820 1.51366 1.19762 0.82311 1.06508 1.37974 0.89613 1.26127 1.04916 0.94461 0.95647 1.69684 1.37650 1.09335 1.38822 0.84814 0.76428 0.78435 0.78317 1.19498 1.19611 1.19644 1.17530 0.91009 0.79096 1.09336 1.91461 1.80619 1.45683 1.94527 1.21132 0.90354 1.00864 1.02648 0.89634 0.90191 0.90205 0.82953 0.84292 0.74299 0.75000 0.88265 0.88518 0.76588 0.91040 0.82131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 71.23 0.71 -0.18 16 2 C -0.08 -1.20 5.88 -19.85 -0.12 -1.32 16 3 C -0.11 -1.93 9.69 22.26 0.22 -1.72 16 4 C -0.12 -3.02 8.72 22.38 0.20 -2.82 16 5 C 0.12 3.00 6.44 38.15 0.25 3.24 16 6 N -0.67 -17.83 5.32 -316.99 -1.69 -19.51 16 7 C 0.71 22.52 8.37 179.06 1.50 24.02 16 8 O -0.60 -21.86 13.51 -4.00 -0.05 -21.92 16 9 N -0.72 -23.24 5.53 -482.29 -2.67 -25.91 16 10 C 0.14 5.00 6.15 85.63 0.53 5.53 16 11 C 0.43 19.63 7.85 87.66 0.69 20.31 16 12 O -0.63 -31.98 15.24 -3.07 -0.05 -32.03 16 13 N -0.56 -27.63 5.29 -306.97 -1.62 -29.25 16 14 C -0.34 -18.38 9.68 84.04 0.81 -17.56 16 15 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 16 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 17 N -0.91 -48.18 13.05 21.66 0.28 -47.90 16 18 Si 1.00 41.54 29.55 68.60 2.03 43.57 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 22 C 0.05 1.17 7.31 22.48 0.16 1.34 16 23 F -0.14 -3.33 16.82 44.97 0.76 -2.57 16 24 C -0.13 -2.23 9.67 22.30 0.22 -2.01 16 25 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.08 0.49 8.09 -2.39 -0.02 0.47 16 27 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 28 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 29 H 0.14 4.04 5.79 -2.91 -0.02 4.02 16 30 H 0.42 9.31 8.47 -92.71 -0.79 8.52 16 31 H 0.41 13.14 7.46 -92.71 -0.69 12.45 16 32 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 33 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 35 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 36 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -66.28 322.69 1.57 -64.71 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -1.04 Total: 42.07 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: 5.63 Total: 28.74 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -5.69 Total: -122.58 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -0.10 Total: -53.94 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.76 Total: -2.57 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -66.28 1.57 -64.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348088822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.269 kcal (2) G-P(sol) polarization free energy of solvation -66.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds