Wall clock time and date at job start Fri Apr 10 2020 17:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38145 * 119.97261 * 2 1 4 4 C 1.38821 * 119.95123 * 179.97438 * 3 2 1 5 5 N 1.40056 * 120.04380 * 179.97438 * 4 3 2 6 6 C 1.34785 * 119.99694 * 33.27676 * 5 4 3 7 7 O 1.21589 * 119.99812 * 5.31396 * 6 5 4 8 8 N 1.34777 * 119.99563 * 185.31659 * 6 5 4 9 9 C 1.46509 * 119.99501 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.46702 * 179.97438 * 9 8 6 11 11 O 1.21296 * 120.00327 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99987 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99933 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99825 * 180.02562 * 13 12 10 16 16 N 1.31416 * 120.00052 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47111 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47144 * 119.99880 * 17 15 13 20 20 H 1.48500 * 109.47168 * 239.99925 * 17 15 13 21 21 C 1.38862 * 119.91304 * 0.02562 * 4 3 2 22 22 C 1.38100 * 119.95532 * 0.02562 * 21 4 3 23 23 C 1.38446 * 119.98088 * 179.97438 * 2 1 3 24 24 F 1.35096 * 119.95573 * 359.74192 * 23 2 1 25 25 H 1.08996 * 109.46835 * 270.01571 * 1 2 3 26 26 H 1.08998 * 109.47304 * 30.02214 * 1 2 3 27 27 H 1.09002 * 109.46842 * 150.01980 * 1 2 3 28 28 H 1.07995 * 120.02305 * 359.95856 * 3 2 1 29 29 H 0.96998 * 120.00251 * 213.27409 * 5 4 3 30 30 H 0.96997 * 120.00178 * 359.97438 * 8 6 5 31 31 H 1.08992 * 109.46997 * 299.99683 * 9 8 6 32 32 H 1.08994 * 109.46824 * 60.00025 * 9 8 6 33 33 H 0.96997 * 120.00234 * 359.97438 * 12 10 9 34 34 H 0.97006 * 119.99720 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.02316 * 180.02562 * 21 4 3 36 36 H 1.07998 * 119.97761 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1967 0.0000 4 6 3.5854 1.1962 0.0005 5 7 4.2871 2.4083 0.0000 6 6 3.7798 3.4808 0.6396 7 8 2.7630 3.3717 1.2973 8 7 4.3997 4.6742 0.5499 9 6 3.8480 5.8402 1.2447 10 6 4.7227 7.0396 0.9854 11 8 5.7095 6.9314 0.2884 12 7 4.4079 8.2329 1.5270 13 6 5.2033 9.3243 1.2907 14 1 6.0824 9.2277 0.6708 15 6 4.8790 10.5544 1.8496 16 7 3.8095 10.6718 2.6043 17 14 5.9631 12.0413 1.5282 18 1 7.0964 11.6477 0.6532 19 1 5.1656 13.0998 0.8582 20 1 6.4887 12.5586 2.8171 21 6 4.2775 -0.0077 0.0005 22 6 3.5838 -1.2018 -0.0005 23 6 2.1989 -1.1992 0.0005 24 9 1.5221 -2.3684 0.0063 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6572 2.1319 -0.0007 29 1 5.1381 2.4759 -0.4606 30 1 5.2111 4.7611 0.0255 31 1 2.8409 6.0384 0.8783 32 1 3.8125 5.6416 2.3158 33 1 3.6181 8.3198 2.0835 34 1 3.5834 11.5305 2.9947 35 1 5.3575 -0.0102 0.0014 36 1 4.1216 -2.1384 -0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349249258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:10 Heat of formation + Delta-G solvation = -88.255648 kcal Electronic energy + Delta-G solvation = -22206.550376 eV Core-core repulsion = 18412.110663 eV Total energy + Delta-G solvation = -3794.439713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.98914 -40.71307 -38.97753 -38.13999 -34.97525 -34.54909 -33.78397 -32.79115 -31.43760 -29.63829 -27.53261 -27.08199 -24.61180 -23.18372 -21.86043 -20.78324 -19.68958 -18.66920 -18.11488 -17.68286 -17.31903 -16.54045 -15.82357 -15.64595 -15.51199 -15.11071 -14.67993 -14.39533 -14.14177 -14.08266 -13.64294 -13.58689 -13.50266 -13.28767 -13.13159 -12.45891 -12.27777 -12.11172 -11.99085 -11.67782 -11.29474 -11.18208 -10.44722 -10.38575 -10.33752 -10.14404 -9.69675 -9.05102 -8.97398 -8.70085 -8.15706 -8.09958 -6.56221 -3.98453 0.93333 1.05374 2.51566 3.02257 3.07205 3.19761 3.26177 3.51585 3.68522 4.01340 4.14022 4.18965 4.51610 4.56952 4.80527 4.95746 5.05103 5.12385 5.20959 5.43502 5.47941 5.62751 5.78717 5.85873 5.89596 5.91586 5.99381 6.06203 6.15382 6.31666 6.55403 6.80534 6.86649 7.41797 7.87062 7.95565 8.38950 8.51472 8.99726 9.33707 9.81037 10.60590 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.046770 B = 0.002395 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.534638 B =11689.998022 C =12158.964645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.096 4.096 4 C 0.172 3.828 5 N -0.688 5.688 6 C 0.703 3.297 7 O -0.578 6.578 8 N -0.716 5.716 9 C 0.127 3.873 10 C 0.427 3.573 11 O -0.598 6.598 12 N -0.547 5.547 13 C -0.305 4.305 14 H 0.106 0.894 15 C 0.026 3.974 16 N -0.893 5.893 17 Si 0.933 3.067 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.130 4.130 22 C -0.128 4.128 23 C 0.069 3.931 24 F -0.142 7.142 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.148 0.852 29 H 0.410 0.590 30 H 0.409 0.591 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.135 0.865 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 -19.772 -4.889 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.116 4.116 4 C 0.076 3.924 5 N -0.335 5.335 6 C 0.403 3.597 7 O -0.456 6.456 8 N -0.373 5.373 9 C -0.001 4.001 10 C 0.213 3.787 11 O -0.485 6.485 12 N -0.182 5.182 13 C -0.435 4.435 14 H 0.124 0.876 15 C -0.177 4.177 16 N -0.533 5.533 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.151 4.151 22 C -0.147 4.147 23 C 0.049 3.951 24 F -0.121 7.121 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.166 0.834 29 H 0.246 0.754 30 H 0.247 0.753 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.153 0.847 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.137 -19.647 -4.633 20.428 hybrid contribution 0.785 0.771 -0.130 1.108 sum -2.351 -18.876 -4.763 19.609 Atomic orbital electron populations 1.20729 0.89987 1.03231 1.03049 1.19821 0.97142 0.91333 1.01595 1.21018 0.92519 0.98357 0.99752 1.17496 0.91183 0.84475 0.99280 1.42625 1.25360 1.08783 1.56767 1.15830 0.83514 0.80265 0.80044 1.90937 1.25415 1.84181 1.45026 1.44786 1.30998 1.06844 1.54686 1.20856 0.97361 0.84180 0.97726 1.19704 0.88248 0.84580 0.86205 1.90498 1.29981 1.84621 1.43411 1.41793 1.25686 1.07034 1.43695 1.19777 1.07819 0.86124 1.29736 0.87594 1.25340 0.96970 0.99360 0.96049 1.69624 1.25023 1.26573 1.32126 0.85751 0.79649 0.80361 0.78294 1.19124 1.20578 1.20575 1.20686 1.00197 0.90121 1.04100 1.20838 0.92056 0.99046 1.02809 1.17471 0.89972 0.80908 1.06702 1.91455 1.80330 1.46068 1.94239 0.90577 0.90783 0.91232 0.83449 0.75434 0.75296 0.89701 0.89725 0.76984 0.91575 0.84699 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.83 36.01 0.35 -0.70 16 2 C -0.10 -1.10 5.88 -104.58 -0.62 -1.72 16 3 C -0.10 -1.20 8.31 -39.40 -0.33 -1.53 16 4 C 0.17 1.99 6.28 -83.65 -0.53 1.46 16 5 N -0.69 -7.85 5.35 -14.21 -0.08 -7.92 16 6 C 0.70 10.55 8.30 -86.91 -0.72 9.83 16 7 O -0.58 -10.36 14.03 5.29 0.07 -10.28 16 8 N -0.72 -11.09 5.53 -66.41 -0.37 -11.46 16 9 C 0.13 2.22 6.15 -5.19 -0.03 2.18 16 10 C 0.43 9.41 7.85 -10.99 -0.09 9.32 16 11 O -0.60 -14.75 15.24 5.54 0.08 -14.66 16 12 N -0.55 -13.19 5.29 -10.96 -0.06 -13.24 16 13 C -0.31 -8.11 9.68 -14.93 -0.14 -8.25 16 14 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 16 N -0.89 -23.45 13.05 55.50 0.72 -22.73 16 17 Si 0.93 20.16 29.55 -169.99 -5.02 15.14 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 C -0.13 -1.21 9.96 -39.40 -0.39 -1.60 16 22 C -0.13 -1.20 10.02 -39.54 -0.40 -1.59 16 23 C 0.07 0.76 7.24 -39.41 -0.29 0.48 16 24 F -0.14 -1.59 16.47 2.25 0.04 -1.55 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 27 H 0.07 0.59 7.64 -51.93 -0.40 0.19 16 28 H 0.15 2.05 6.41 -52.49 -0.34 1.71 16 29 H 0.41 3.41 8.83 -40.82 -0.36 3.05 16 30 H 0.41 6.09 7.46 -40.82 -0.30 5.78 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.40 9.18 7.90 -40.82 -0.32 8.85 16 34 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 323.17 15.07 4.87 4.87 Total: -1.00 -31.04 323.17 -6.77 -37.81 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -3.76 Total: 15.59 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -3.27 Total: 8.44 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.22 Total: -55.35 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.16 Total: -24.95 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.04 -6.77 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349249258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.447 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds