Wall clock time and date at job start Fri Apr 10 2020 17:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38145 * 119.97261 * 2 1 4 4 C 1.38821 * 119.95123 * 179.97438 * 3 2 1 5 5 N 1.40056 * 120.04380 * 179.97438 * 4 3 2 6 6 C 1.34785 * 119.99694 * 33.27676 * 5 4 3 7 7 O 1.21589 * 119.99812 * 5.31396 * 6 5 4 8 8 N 1.34777 * 119.99563 * 185.31659 * 6 5 4 9 9 C 1.46509 * 119.99501 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.46702 * 179.97438 * 9 8 6 11 11 O 1.21296 * 120.00327 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99987 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99933 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99825 * 180.02562 * 13 12 10 16 16 N 1.31416 * 120.00052 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47111 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47144 * 119.99880 * 17 15 13 20 20 H 1.48500 * 109.47168 * 239.99925 * 17 15 13 21 21 C 1.38862 * 119.91304 * 0.02562 * 4 3 2 22 22 C 1.38100 * 119.95532 * 0.02562 * 21 4 3 23 23 C 1.38446 * 119.98088 * 179.97438 * 2 1 3 24 24 F 1.35096 * 119.95573 * 359.74192 * 23 2 1 25 25 H 1.08996 * 109.46835 * 270.01571 * 1 2 3 26 26 H 1.08998 * 109.47304 * 30.02214 * 1 2 3 27 27 H 1.09002 * 109.46842 * 150.01980 * 1 2 3 28 28 H 1.07995 * 120.02305 * 359.95856 * 3 2 1 29 29 H 0.96998 * 120.00251 * 213.27409 * 5 4 3 30 30 H 0.96997 * 120.00178 * 359.97438 * 8 6 5 31 31 H 1.08992 * 109.46997 * 299.99683 * 9 8 6 32 32 H 1.08994 * 109.46824 * 60.00025 * 9 8 6 33 33 H 0.96997 * 120.00234 * 359.97438 * 12 10 9 34 34 H 0.97006 * 119.99720 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.02316 * 180.02562 * 21 4 3 36 36 H 1.07998 * 119.97761 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1967 0.0000 4 6 3.5854 1.1962 0.0005 5 7 4.2871 2.4083 0.0000 6 6 3.7798 3.4808 0.6396 7 8 2.7630 3.3717 1.2973 8 7 4.3997 4.6742 0.5499 9 6 3.8480 5.8402 1.2447 10 6 4.7227 7.0396 0.9854 11 8 5.7095 6.9314 0.2884 12 7 4.4079 8.2329 1.5270 13 6 5.2033 9.3243 1.2907 14 1 6.0824 9.2277 0.6708 15 6 4.8790 10.5544 1.8496 16 7 3.8095 10.6718 2.6043 17 14 5.9631 12.0413 1.5282 18 1 7.0964 11.6477 0.6532 19 1 5.1656 13.0998 0.8582 20 1 6.4887 12.5586 2.8171 21 6 4.2775 -0.0077 0.0005 22 6 3.5838 -1.2018 -0.0005 23 6 2.1989 -1.1992 0.0005 24 9 1.5221 -2.3684 0.0063 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6572 2.1319 -0.0007 29 1 5.1381 2.4759 -0.4606 30 1 5.2111 4.7611 0.0255 31 1 2.8409 6.0384 0.8783 32 1 3.8125 5.6416 2.3158 33 1 3.6181 8.3198 2.0835 34 1 3.5834 11.5305 2.9947 35 1 5.3575 -0.0102 0.0014 36 1 4.1216 -2.1384 -0.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349249258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:09 Heat of formation + Delta-G solvation = -110.003972 kcal Electronic energy + Delta-G solvation = -22207.493454 eV Core-core repulsion = 18412.110663 eV Total energy + Delta-G solvation = -3795.382791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.83365 -41.80346 -40.35370 -39.51777 -36.29686 -35.93483 -35.36507 -33.59245 -33.36547 -30.66636 -28.88430 -27.96380 -26.39894 -24.12224 -22.77016 -21.87404 -21.37446 -20.15051 -19.74226 -18.50580 -18.37874 -17.59743 -17.29238 -16.80703 -16.63395 -16.56647 -16.27799 -15.74390 -15.67276 -15.24561 -15.01453 -14.38543 -14.34567 -14.15606 -13.99350 -13.97346 -13.70483 -13.54753 -13.14672 -12.91058 -12.87042 -12.44232 -12.12327 -12.10085 -11.57700 -11.50140 -11.17069 -10.56257 -10.27612 -10.08723 -9.86332 -8.99732 -8.51111 -6.01107 0.07945 0.24291 1.35405 1.38125 1.45095 1.58102 1.87000 1.94970 2.28176 2.63861 2.95826 3.16478 3.21335 3.33193 3.72447 3.82826 4.16337 4.19841 4.25238 4.42447 4.44834 4.45931 4.70108 4.71800 4.82824 5.10312 5.15096 5.17030 5.23464 5.31340 5.38961 5.44631 5.84966 5.92466 5.96042 6.47866 6.85946 7.03893 7.33939 7.45334 7.94372 8.65962 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.046770 B = 0.002395 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.534638 B =11689.998022 C =12158.964645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.108 4.108 3 C -0.115 4.115 4 C 0.153 3.847 5 N -0.671 5.671 6 C 0.705 3.295 7 O -0.609 6.609 8 N -0.715 5.715 9 C 0.141 3.859 10 C 0.434 3.566 11 O -0.624 6.624 12 N -0.560 5.560 13 C -0.335 4.335 14 H 0.087 0.913 15 C -0.011 4.011 16 N -0.916 5.916 17 Si 0.996 3.004 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.272 1.272 21 C -0.118 4.118 22 C -0.121 4.121 23 C 0.058 3.942 24 F -0.145 7.145 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.426 0.574 30 H 0.413 0.587 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.167 0.833 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -20.857 -5.133 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.109 4.109 3 C -0.136 4.136 4 C 0.058 3.942 5 N -0.320 5.320 6 C 0.405 3.595 7 O -0.488 6.488 8 N -0.372 5.372 9 C 0.012 3.988 10 C 0.221 3.779 11 O -0.512 6.512 12 N -0.195 5.195 13 C -0.464 4.464 14 H 0.105 0.895 15 C -0.212 4.212 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.197 1.197 21 C -0.138 4.138 22 C -0.141 4.141 23 C 0.038 3.962 24 F -0.124 7.124 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.145 0.855 29 H 0.265 0.735 30 H 0.252 0.748 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.185 0.815 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.268 -20.772 -4.896 21.461 hybrid contribution 0.504 0.973 -0.084 1.099 sum -1.764 -19.799 -4.980 20.492 Atomic orbital electron populations 1.20766 0.89147 1.03811 1.03318 1.19982 0.98038 0.91287 1.01608 1.20939 0.93251 0.97978 1.01391 1.17726 0.91071 0.85087 1.00339 1.42392 1.25741 1.07870 1.55994 1.15870 0.83037 0.80583 0.79961 1.90925 1.26762 1.84669 1.46468 1.44659 1.31198 1.06593 1.54794 1.20642 0.96637 0.82857 0.98625 1.20394 0.87922 0.85108 0.84484 1.90476 1.31276 1.85261 1.44160 1.41841 1.25825 1.07346 1.44484 1.19763 1.08201 0.87641 1.30821 0.89518 1.26122 0.98107 1.01478 0.95471 1.69687 1.25975 1.27476 1.32504 0.84821 0.77894 0.77013 0.78319 1.19378 1.19722 1.19709 1.20988 1.01698 0.88907 1.02216 1.21194 0.91439 1.00290 1.01133 1.17684 0.90814 0.80614 1.07043 1.91449 1.80545 1.46068 1.94295 0.90426 0.90471 0.90390 0.85501 0.73545 0.74836 0.88615 0.88712 0.76663 0.91090 0.81526 0.81635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 9.83 71.24 0.70 -1.40 16 2 C -0.11 -2.38 5.88 -19.83 -0.12 -2.50 16 3 C -0.11 -2.86 8.31 22.39 0.19 -2.67 16 4 C 0.15 3.32 6.28 38.12 0.24 3.56 16 5 N -0.67 -14.31 5.35 -317.11 -1.70 -16.01 16 6 C 0.71 20.57 8.30 179.05 1.49 22.06 16 7 O -0.61 -21.68 14.03 -4.00 -0.06 -21.73 16 8 N -0.72 -21.53 5.53 -482.29 -2.67 -24.20 16 9 C 0.14 4.84 6.15 85.63 0.53 5.36 16 10 C 0.43 19.16 7.85 87.66 0.69 19.84 16 11 O -0.62 -30.86 15.24 -3.08 -0.05 -30.91 16 12 N -0.56 -27.26 5.29 -306.99 -1.62 -28.89 16 13 C -0.33 -18.04 9.68 84.04 0.81 -17.23 16 14 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 15 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 16 N -0.92 -47.97 13.05 21.66 0.28 -47.69 16 17 Si 1.00 41.06 29.55 68.60 2.03 43.09 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 C -0.12 -1.84 9.96 22.39 0.22 -1.62 16 22 C -0.12 -1.92 10.02 22.30 0.22 -1.70 16 23 C 0.06 1.19 7.24 22.38 0.16 1.35 16 24 F -0.14 -3.02 16.47 44.97 0.74 -2.28 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.33 8.08 -2.39 -0.02 1.32 16 27 H 0.08 1.27 7.64 -2.39 -0.02 1.25 16 28 H 0.13 3.65 6.41 -2.91 -0.02 3.63 16 29 H 0.43 6.18 8.83 -92.71 -0.82 5.37 16 30 H 0.41 11.90 7.46 -92.71 -0.69 11.21 16 31 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 34 H 0.28 13.67 8.31 -92.70 -0.77 12.90 16 35 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -66.46 323.17 1.48 -64.97 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: -1.07 Total: 38.68 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 5.60 Total: 24.95 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -5.71 Total: -116.78 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -0.10 Total: -52.64 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.74 Total: -2.28 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -66.46 1.48 -64.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349249258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.029 kcal (2) G-P(sol) polarization free energy of solvation -66.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds