Wall clock time and date at job start Fri Apr 10 2020 17:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35545 * 117.00040 * 2 1 4 4 C 1.38998 * 120.47441 * 179.97438 * 3 2 1 5 5 C 1.39124 * 118.29141 * 180.02562 * 4 3 2 6 6 N 1.39065 * 120.48757 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99879 * 174.91565 * 6 5 4 8 8 O 1.21576 * 119.99921 * 5.08721 * 7 6 5 9 9 N 1.34773 * 120.00237 * 185.08500 * 7 6 5 10 10 C 1.46498 * 120.00144 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47244 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99806 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00013 * 180.02562 * 11 10 9 14 14 C 1.37107 * 120.00073 * 179.97438 * 13 11 10 15 15 H 1.07997 * 119.99499 * 359.97438 * 14 13 11 16 16 C 1.38943 * 120.00416 * 179.97438 * 14 13 11 17 17 N 1.31416 * 119.99379 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00262 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46999 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47231 * 119.99804 * 18 16 14 21 21 H 1.48505 * 109.46960 * 239.99876 * 18 16 14 22 22 N 1.33087 * 119.02015 * 359.97438 * 5 4 3 23 23 C 1.31716 * 120.85447 * 0.02562 * 22 5 4 24 24 N 1.31789 * 121.88677 * 359.97438 * 23 22 5 25 25 H 1.09002 * 109.47425 * 59.99926 * 1 2 3 26 26 H 1.09007 * 109.47018 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47412 * 299.99140 * 1 2 3 28 28 H 1.08001 * 120.85559 * 359.75471 * 4 3 2 29 29 H 0.96996 * 120.00653 * 354.92210 * 6 5 4 30 30 H 0.97003 * 120.00213 * 0.02562 * 9 7 6 31 31 H 1.08998 * 109.47536 * 299.99846 * 10 9 7 32 32 H 1.08999 * 109.46946 * 60.00369 * 10 9 7 33 33 H 0.96995 * 120.00391 * 359.97438 * 13 11 10 34 34 H 0.97011 * 119.99501 * 180.02562 * 17 16 14 35 35 H 1.07995 * 119.05736 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.4317 1.2919 0.0005 5 6 4.0157 2.5547 0.0011 6 7 5.3995 2.6921 0.0021 7 6 5.9553 3.9156 -0.1008 8 8 5.2497 4.9057 -0.1014 9 7 7.2932 4.0416 -0.2030 10 6 7.8974 5.3716 -0.3143 11 6 9.3949 5.2363 -0.4152 12 8 9.9071 4.1370 -0.3955 13 7 10.1650 6.3368 -0.5263 14 6 11.5275 6.2137 -0.6175 15 1 11.9836 5.2349 -0.6000 16 6 12.3214 7.3481 -0.7325 17 7 11.7663 8.5391 -0.7544 18 14 14.1777 7.1804 -0.8576 19 1 14.5491 5.7434 -0.8104 20 1 14.6429 7.7706 -2.1384 21 1 14.8167 7.8939 0.2773 22 7 3.2304 3.6292 0.0005 23 6 1.9189 3.5073 0.0000 24 7 1.3292 2.3287 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 4.0408 0.4001 0.0049 29 1 5.9648 1.9075 0.0769 30 1 7.8562 3.2517 -0.2029 31 1 7.5171 5.8700 -1.2060 32 1 7.6440 5.9607 0.5671 33 1 9.7554 7.2159 -0.5416 34 1 12.3206 9.3311 -0.8350 35 1 1.3093 4.3988 0.0000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350069697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:16 Heat of formation + Delta-G solvation = -60.407630 kcal Electronic energy + Delta-G solvation = -22185.826015 eV Core-core repulsion = 18412.513845 eV Total energy + Delta-G solvation = -3773.312170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.111 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.45735 -41.23293 -40.12378 -39.34162 -36.59141 -36.18014 -35.34081 -33.43418 -33.31224 -32.32094 -29.34023 -28.25327 -26.49083 -25.51782 -24.49132 -22.27769 -21.38662 -20.31342 -20.18485 -19.74379 -18.53038 -17.58227 -17.35122 -17.29516 -16.93452 -16.50259 -16.41467 -16.21564 -15.93312 -15.87374 -15.53391 -15.11350 -15.06293 -14.94055 -13.96707 -13.73751 -13.54091 -12.93813 -12.90252 -12.80288 -12.43265 -12.26701 -12.10536 -11.82545 -11.57297 -11.56856 -10.55231 -10.52325 -10.24245 -10.21794 -10.08045 -9.80651 -8.50196 -6.00184 -0.11012 0.15326 1.08127 1.36036 1.44342 1.58170 1.89883 1.99175 2.00857 2.28282 2.72091 2.84584 3.10560 3.15515 3.17310 3.46172 3.86372 4.09478 4.21199 4.41237 4.45037 4.45866 4.46565 4.47701 4.73157 4.87095 5.20344 5.32054 5.39874 5.49787 5.90221 5.93514 6.13581 6.48690 6.73845 7.04663 7.14947 7.37438 7.46358 7.95273 8.66816 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.060234 B = 0.002291 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.743179 B =12220.219226 C =12655.654697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.307 6.307 3 C 0.372 3.628 4 C -0.279 4.279 5 C 0.437 3.563 6 N -0.647 5.647 7 C 0.698 3.302 8 O -0.563 6.563 9 N -0.714 5.714 10 C 0.142 3.858 11 C 0.434 3.566 12 O -0.623 6.623 13 N -0.559 5.559 14 C -0.335 4.335 15 H 0.087 0.913 16 C -0.012 4.012 17 N -0.916 5.916 18 Si 0.997 3.003 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.272 1.272 22 N -0.565 5.565 23 C 0.359 3.641 24 N -0.602 5.602 25 H 0.061 0.939 26 H 0.127 0.873 27 H 0.061 0.939 28 H 0.180 0.820 29 H 0.436 0.564 30 H 0.413 0.587 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.399 0.601 34 H 0.279 0.721 35 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.623 -14.060 1.566 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.211 6.211 3 C 0.187 3.813 4 C -0.306 4.306 5 C 0.198 3.802 6 N -0.297 5.297 7 C 0.397 3.603 8 O -0.436 6.436 9 N -0.373 5.373 10 C 0.014 3.986 11 C 0.221 3.779 12 O -0.511 6.511 13 N -0.195 5.195 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.213 4.213 17 N -0.556 5.556 18 Si 0.820 3.180 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.197 1.197 22 N -0.290 5.290 23 C 0.071 3.929 24 N -0.335 5.335 25 H 0.080 0.920 26 H 0.145 0.855 27 H 0.080 0.920 28 H 0.197 0.803 29 H 0.277 0.723 30 H 0.252 0.748 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -20.135 -13.165 1.542 24.107 hybrid contribution 1.525 -0.602 -0.043 1.640 sum -18.610 -13.767 1.499 23.197 Atomic orbital electron populations 1.23197 0.74923 1.05173 1.02781 1.86222 1.25034 1.23231 1.86630 1.19859 0.89105 0.85420 0.86964 1.21151 0.93652 0.98375 1.17391 1.18189 0.84414 0.89163 0.88434 1.42408 1.03851 1.09654 1.73745 1.15922 0.82138 0.83661 0.78574 1.91036 1.61023 1.36550 1.55030 1.44672 1.04674 1.10118 1.77799 1.20639 0.89094 0.84577 1.04310 1.20381 0.89188 0.84766 0.83528 1.90473 1.75503 1.26942 1.58222 1.41839 1.06736 1.07950 1.62967 1.19771 0.82191 0.94776 1.49708 0.89474 1.26131 1.05173 0.94040 0.95921 1.69693 1.38368 0.98360 1.49170 0.84808 0.76444 0.78494 0.78214 1.19370 1.19747 1.19744 1.68501 1.06986 1.32384 1.21097 1.25165 0.87022 0.94635 0.86122 1.68201 1.41649 0.99254 1.24432 0.92046 0.85461 0.91986 0.80259 0.72316 0.74839 0.88667 0.88595 0.76655 0.91111 0.75746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.41 113.37 1.18 1.55 16 2 O -0.31 -5.26 10.49 -88.50 -0.93 -6.19 16 3 C 0.37 7.56 7.52 84.70 0.64 8.19 16 4 C -0.28 -5.31 9.99 22.67 0.23 -5.08 16 5 C 0.44 10.62 7.45 132.83 0.99 11.61 16 6 N -0.65 -14.72 5.39 -321.90 -1.73 -16.46 16 7 C 0.70 21.39 8.52 179.05 1.53 22.91 16 8 O -0.56 -21.33 14.65 -3.96 -0.06 -21.39 16 9 N -0.71 -21.92 5.53 -482.32 -2.67 -24.59 16 10 C 0.14 4.96 6.15 85.63 0.53 5.48 16 11 C 0.43 19.32 7.85 87.66 0.69 20.01 16 12 O -0.62 -30.97 15.24 -3.07 -0.05 -31.01 16 13 N -0.56 -27.44 5.29 -306.98 -1.62 -29.07 16 14 C -0.34 -18.14 9.68 84.04 0.81 -17.33 16 15 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 16 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 17 N -0.92 -48.19 13.05 21.66 0.28 -47.90 16 18 Si 1.00 41.30 29.55 68.60 2.03 43.33 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 N -0.56 -15.89 8.04 -197.56 -1.59 -17.48 16 23 C 0.36 7.96 12.28 180.91 2.22 10.19 16 24 N -0.60 -12.72 9.38 -313.03 -2.94 -15.66 16 25 H 0.06 0.70 8.12 -2.39 -0.02 0.68 16 26 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16 28 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 29 H 0.44 6.43 8.74 -92.71 -0.81 5.62 16 30 H 0.41 11.97 7.46 -92.71 -0.69 11.28 16 31 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 34 H 0.28 13.74 8.31 -92.70 -0.77 12.97 16 35 H 0.23 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -71.78 319.62 -1.05 -72.82 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -1.05 Total: 36.22 kcal Atomic # 6 Polarization: 48.10 SS G_CDS: 9.28 Total: 57.38 kcal Atomic # 7 Polarization: -140.89 SS G_CDS: -10.27 Total: -151.16 kcal Atomic # 8 Polarization: -57.56 SS G_CDS: -1.03 Total: -58.59 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -71.78 -1.05 -72.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350069697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.417 kcal (2) G-P(sol) polarization free energy of solvation -71.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds