Wall clock time and date at job start Fri Apr 10 2020 17:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38305 * 119.98218 * 2 1 4 4 C 1.38233 * 120.15798 * 180.02562 * 3 2 1 5 5 C 1.38190 * 120.10786 * 0.25402 * 4 3 2 6 6 C 1.38756 * 119.95307 * 359.42453 * 5 4 3 7 7 N 1.40085 * 120.07459 * 180.29537 * 6 5 4 8 8 C 1.34772 * 120.00033 * 24.78348 * 7 6 5 9 9 O 1.21597 * 120.00278 * 5.63554 * 8 7 6 10 10 N 1.34773 * 120.00228 * 185.63202 * 8 7 6 11 11 C 1.46497 * 120.00225 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.47006 * 180.02562 * 11 10 8 13 13 O 1.21287 * 120.00165 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99959 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00230 * 179.97438 * 14 12 11 16 16 H 1.08004 * 119.99838 * 359.97438 * 15 14 12 17 17 C 1.38942 * 120.00279 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00295 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47356 * 89.99625 * 19 17 15 21 21 H 1.48499 * 109.47325 * 209.99901 * 19 17 15 22 22 H 1.48505 * 109.46972 * 329.99677 * 19 17 15 23 23 C 1.38273 * 119.97393 * 179.97438 * 2 1 3 24 24 F 1.35099 * 120.05617 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47421 * 89.99648 * 1 2 3 26 26 H 1.09000 * 109.47187 * 209.99936 * 1 2 3 27 27 H 1.08999 * 109.47129 * 330.00090 * 1 2 3 28 28 H 1.08002 * 119.91826 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.94373 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.02108 * 179.72579 * 5 4 3 31 31 H 0.96998 * 119.99764 * 204.77677 * 7 6 5 32 32 H 0.97006 * 119.99650 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47205 * 300.00168 * 11 10 8 34 34 H 1.08996 * 109.47338 * 60.00469 * 11 10 8 35 35 H 0.97005 * 119.99686 * 359.97438 * 14 12 11 36 36 H 0.96998 * 120.00172 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1980 0.0000 4 6 3.5805 1.2022 -0.0005 5 6 4.2773 0.0089 -0.0064 6 6 3.5886 -1.1956 0.0004 7 7 4.2925 -2.4068 0.0007 8 6 5.5495 -2.4555 0.4844 9 8 6.0358 -1.4747 1.0135 10 7 6.2675 -3.5914 0.3816 11 6 7.6341 -3.6442 0.9068 12 6 8.2117 -5.0154 0.6672 13 8 7.5471 -5.8650 0.1127 14 7 9.4665 -5.2978 1.0699 15 6 9.9919 -6.5453 0.8524 16 1 9.4000 -7.3019 0.3587 17 6 11.2852 -6.8366 1.2681 18 7 12.0052 -5.9162 1.8693 19 14 12.0013 -8.5362 0.9711 20 1 12.6849 -8.5619 -0.3469 21 1 12.9790 -8.8555 2.0422 22 1 10.9091 -9.5423 0.9819 23 6 2.1978 -1.1978 0.0005 24 9 1.5229 -2.3681 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6565 2.1324 0.0004 29 1 4.1166 2.1397 -0.0010 30 1 5.3573 0.0139 -0.0113 31 1 3.8751 -3.2104 -0.3470 32 1 5.8797 -4.3738 -0.0408 33 1 8.2470 -2.8985 0.4005 34 1 7.6203 -3.4374 1.9769 35 1 9.9979 -4.6184 1.5137 36 1 12.9083 -6.1195 2.1592 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350810714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:21 Heat of formation + Delta-G solvation = -85.475539 kcal Electronic energy + Delta-G solvation = -22388.912014 eV Core-core repulsion = 18594.592855 eV Total energy + Delta-G solvation = -3794.319158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.04989 -40.66611 -38.97339 -38.18425 -35.19051 -34.55304 -33.81950 -32.41412 -31.42565 -29.87990 -27.52827 -27.08611 -24.62717 -22.77983 -22.38647 -20.56574 -19.65265 -18.76871 -18.19587 -17.59873 -17.31507 -16.34838 -15.98931 -15.58520 -15.53121 -15.19024 -14.76432 -14.59051 -14.19222 -14.12975 -13.70642 -13.63263 -13.54456 -13.32384 -12.67254 -12.43950 -12.26819 -11.99378 -11.86465 -11.66598 -11.60345 -11.15537 -10.62836 -10.48498 -10.35159 -10.02940 -9.67498 -8.99275 -8.79364 -8.68994 -8.16105 -8.13227 -6.55014 -3.97245 0.97513 1.06047 2.46649 3.03329 3.09586 3.20287 3.25528 3.54292 3.69615 3.99275 4.04404 4.19027 4.46168 4.66708 4.80951 4.94629 5.09744 5.13436 5.18535 5.30440 5.50176 5.58522 5.74879 5.83509 5.90103 5.98789 6.02889 6.06461 6.27886 6.32107 6.57140 6.81005 6.83974 7.42760 7.87877 7.93121 8.40007 8.48688 9.00783 9.34670 9.82234 10.61746 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.044348 B = 0.002526 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.221956 B =11080.595797 C =11620.636422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.122 4.122 4 C -0.102 4.102 5 C -0.114 4.114 6 C 0.154 3.846 7 N -0.683 5.683 8 C 0.706 3.294 9 O -0.576 6.576 10 N -0.715 5.715 11 C 0.127 3.873 12 C 0.427 3.573 13 O -0.598 6.598 14 N -0.547 5.547 15 C -0.306 4.306 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.055 3.945 24 F -0.138 7.138 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.159 0.841 31 H 0.411 0.589 32 H 0.410 0.590 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.396 0.604 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.728 13.319 -3.472 22.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.141 4.141 4 C -0.120 4.120 5 C -0.134 4.134 6 C 0.056 3.944 7 N -0.329 5.329 8 C 0.406 3.594 9 O -0.454 6.454 10 N -0.372 5.372 11 C -0.001 4.001 12 C 0.212 3.788 13 O -0.484 6.484 14 N -0.182 5.182 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.760 3.240 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.193 1.193 23 C 0.033 3.967 24 F -0.117 7.117 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.176 0.824 31 H 0.247 0.753 32 H 0.248 0.752 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.230 0.770 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.411 13.466 -3.266 22.252 hybrid contribution 0.334 -1.448 -0.146 1.493 sum -17.077 12.019 -3.412 21.159 Atomic orbital electron populations 1.20708 0.90077 1.03314 1.02757 1.19703 0.96789 0.91362 1.02221 1.20868 0.94202 0.96799 1.02213 1.21126 0.93873 0.98080 0.98955 1.21465 1.02511 0.89593 0.99847 1.17557 0.88555 0.86655 1.01587 1.42511 1.14580 1.10619 1.65211 1.15762 0.80286 0.84076 0.79231 1.90880 1.70617 1.34907 1.49029 1.44798 1.15308 1.13744 1.63303 1.20871 0.81553 0.97566 1.00138 1.19699 0.83938 0.88980 0.86148 1.90500 1.60490 1.49006 1.48450 1.41781 1.11549 1.14013 1.50839 1.19728 0.97526 0.89482 1.36764 0.87651 1.25334 0.96220 0.99833 0.96310 1.69612 1.10962 1.34019 1.38776 0.85803 0.78779 0.81360 0.78034 1.20232 1.20766 1.19304 1.17171 0.87743 0.81698 1.10136 1.91450 1.80009 1.45810 1.94449 0.90810 0.91229 0.90897 0.85206 0.85031 0.82367 0.75289 0.75227 0.89624 0.89649 0.76978 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.83 36.01 0.35 -0.46 16 2 C -0.10 -0.98 5.88 -104.58 -0.62 -1.59 16 3 C -0.12 -1.07 9.70 -39.56 -0.38 -1.45 16 4 C -0.10 -1.00 10.04 -39.60 -0.40 -1.40 16 5 C -0.11 -1.43 8.72 -39.41 -0.34 -1.78 16 6 C 0.15 2.00 6.44 -83.58 -0.54 1.47 16 7 N -0.68 -9.01 5.32 -14.17 -0.08 -9.08 16 8 C 0.71 11.19 8.37 -86.93 -0.73 10.46 16 9 O -0.58 -10.43 13.51 5.28 0.07 -10.36 16 10 N -0.71 -11.61 5.53 -66.42 -0.37 -11.97 16 11 C 0.13 2.26 6.15 -5.19 -0.03 2.23 16 12 C 0.43 9.57 7.85 -10.98 -0.09 9.48 16 13 O -0.60 -15.03 15.24 5.55 0.08 -14.94 16 14 N -0.55 -13.33 5.29 -10.96 -0.06 -13.39 16 15 C -0.31 -8.20 9.68 -14.94 -0.14 -8.35 16 16 H 0.11 2.95 7.16 -52.48 -0.38 2.57 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 18 N -0.89 -23.60 13.05 55.50 0.72 -22.87 16 19 Si 0.93 20.34 29.55 -169.99 -5.02 15.32 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 C 0.05 0.65 7.25 -39.26 -0.28 0.36 16 24 F -0.14 -1.65 16.02 2.25 0.04 -1.62 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.53 7.64 -51.93 -0.40 0.13 16 27 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 29 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.16 2.25 5.79 -52.49 -0.30 1.94 16 31 H 0.41 4.54 8.47 -40.82 -0.35 4.20 16 32 H 0.41 6.49 7.46 -40.82 -0.30 6.19 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.40 9.26 7.90 -40.82 -0.32 8.93 16 36 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 321.58 15.07 4.85 4.85 Total: -1.00 -30.88 321.58 -6.77 -37.65 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -3.72 Total: 16.86 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -3.29 Total: 9.56 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.22 Total: -57.31 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.16 Total: -25.30 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.88 -6.77 -37.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350810714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.825 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds