Wall clock time and date at job start Fri Apr 10 2020 17:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38305 * 119.98218 * 2 1 4 4 C 1.38233 * 120.15798 * 180.02562 * 3 2 1 5 5 C 1.38190 * 120.10786 * 0.25402 * 4 3 2 6 6 C 1.38756 * 119.95307 * 359.42453 * 5 4 3 7 7 N 1.40085 * 120.07459 * 180.29537 * 6 5 4 8 8 C 1.34772 * 120.00033 * 24.78348 * 7 6 5 9 9 O 1.21597 * 120.00278 * 5.63554 * 8 7 6 10 10 N 1.34773 * 120.00228 * 185.63202 * 8 7 6 11 11 C 1.46497 * 120.00225 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.47006 * 180.02562 * 11 10 8 13 13 O 1.21287 * 120.00165 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99959 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00230 * 179.97438 * 14 12 11 16 16 H 1.08004 * 119.99838 * 359.97438 * 15 14 12 17 17 C 1.38942 * 120.00279 * 180.02562 * 15 14 12 18 18 N 1.31413 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00295 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47356 * 89.99625 * 19 17 15 21 21 H 1.48499 * 109.47325 * 209.99901 * 19 17 15 22 22 H 1.48505 * 109.46972 * 329.99677 * 19 17 15 23 23 C 1.38273 * 119.97393 * 179.97438 * 2 1 3 24 24 F 1.35099 * 120.05617 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47421 * 89.99648 * 1 2 3 26 26 H 1.09000 * 109.47187 * 209.99936 * 1 2 3 27 27 H 1.08999 * 109.47129 * 330.00090 * 1 2 3 28 28 H 1.08002 * 119.91826 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.94373 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.02108 * 179.72579 * 5 4 3 31 31 H 0.96998 * 119.99764 * 204.77677 * 7 6 5 32 32 H 0.97006 * 119.99650 * 0.02562 * 10 8 7 33 33 H 1.09000 * 109.47205 * 300.00168 * 11 10 8 34 34 H 1.08996 * 109.47338 * 60.00469 * 11 10 8 35 35 H 0.97005 * 119.99686 * 359.97438 * 14 12 11 36 36 H 0.96998 * 120.00172 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1980 0.0000 4 6 3.5805 1.2022 -0.0005 5 6 4.2773 0.0089 -0.0064 6 6 3.5886 -1.1956 0.0004 7 7 4.2925 -2.4068 0.0007 8 6 5.5495 -2.4555 0.4844 9 8 6.0358 -1.4747 1.0135 10 7 6.2675 -3.5914 0.3816 11 6 7.6341 -3.6442 0.9068 12 6 8.2117 -5.0154 0.6672 13 8 7.5471 -5.8650 0.1127 14 7 9.4665 -5.2978 1.0699 15 6 9.9919 -6.5453 0.8524 16 1 9.4000 -7.3019 0.3587 17 6 11.2852 -6.8366 1.2681 18 7 12.0052 -5.9162 1.8693 19 14 12.0013 -8.5362 0.9711 20 1 12.6849 -8.5619 -0.3469 21 1 12.9790 -8.8555 2.0422 22 1 10.9091 -9.5423 0.9819 23 6 2.1978 -1.1978 0.0005 24 9 1.5229 -2.3681 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6565 2.1324 0.0004 29 1 4.1166 2.1397 -0.0010 30 1 5.3573 0.0139 -0.0113 31 1 3.8751 -3.2104 -0.3470 32 1 5.8797 -4.3738 -0.0408 33 1 8.2470 -2.8985 0.4005 34 1 7.6203 -3.4374 1.9769 35 1 9.9979 -4.6184 1.5137 36 1 12.9083 -6.1195 2.1592 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350810714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:20 Heat of formation + Delta-G solvation = -107.123697 kcal Electronic energy + Delta-G solvation = -22389.850748 eV Core-core repulsion = 18594.592855 eV Total energy + Delta-G solvation = -3795.257893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.94699 -41.83578 -40.34652 -39.56267 -36.40705 -36.10663 -35.45135 -33.41246 -33.17835 -30.88286 -28.98425 -27.83658 -26.45023 -23.81928 -23.23705 -21.71107 -21.38685 -20.13638 -19.87697 -18.73595 -18.27443 -17.51973 -17.26789 -16.89335 -16.69752 -16.59764 -16.33227 -15.84121 -15.72883 -15.44360 -15.21638 -14.48051 -14.30110 -14.17801 -14.01111 -13.80933 -13.55383 -13.25947 -13.14407 -12.91395 -12.60271 -12.46849 -12.40437 -12.13397 -11.64322 -11.58367 -11.19296 -10.58950 -10.33933 -10.10565 -9.61033 -9.09434 -8.52206 -6.02436 0.12355 0.22575 1.28149 1.35620 1.43174 1.55505 1.83365 1.91664 2.26939 2.67062 2.87530 3.14441 3.15055 3.17909 3.72632 3.95245 4.16298 4.20574 4.31624 4.39880 4.42163 4.43137 4.74017 4.80701 4.90126 5.08369 5.15509 5.22700 5.29916 5.37371 5.43796 5.52632 5.71067 5.90549 5.98067 6.46356 6.72553 7.02290 7.23069 7.42725 7.92713 8.64601 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.044348 B = 0.002526 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.221956 B =11080.595797 C =11620.636422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.111 4.111 4 C -0.098 4.098 5 C -0.134 4.134 6 C 0.127 3.873 7 N -0.674 5.674 8 C 0.709 3.291 9 O -0.600 6.600 10 N -0.715 5.715 11 C 0.141 3.859 12 C 0.432 3.568 13 O -0.625 6.625 14 N -0.558 5.558 15 C -0.337 4.337 16 H 0.086 0.914 17 C -0.010 4.010 18 N -0.915 5.915 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.271 1.271 23 C 0.041 3.959 24 F -0.143 7.143 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.167 0.833 29 H 0.156 0.844 30 H 0.138 0.862 31 H 0.419 0.581 32 H 0.412 0.588 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.400 0.600 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.974 14.657 -3.586 24.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.129 4.129 4 C -0.116 4.116 5 C -0.155 4.155 6 C 0.031 3.969 7 N -0.321 5.321 8 C 0.409 3.591 9 O -0.480 6.480 10 N -0.372 5.372 11 C 0.013 3.987 12 C 0.219 3.781 13 O -0.513 6.513 14 N -0.193 5.193 15 C -0.466 4.466 16 H 0.104 0.896 17 C -0.211 4.211 18 N -0.555 5.555 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.195 1.195 23 C 0.019 3.981 24 F -0.122 7.122 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.185 0.815 29 H 0.174 0.826 30 H 0.156 0.844 31 H 0.257 0.743 32 H 0.250 0.750 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.234 0.766 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.692 14.827 -3.389 24.098 hybrid contribution 0.598 -1.749 -0.132 1.853 sum -18.094 13.078 -3.521 22.602 Atomic orbital electron populations 1.20796 0.88055 1.04159 1.03787 1.20135 0.98323 0.90874 1.00783 1.21293 0.93795 0.97858 0.99970 1.21440 0.94656 0.97957 0.97590 1.21428 1.01767 0.90751 1.01540 1.17790 0.89227 0.86482 1.03429 1.42351 1.13659 1.11412 1.64698 1.15760 0.80885 0.83376 0.79068 1.90867 1.71390 1.35547 1.50152 1.44703 1.14816 1.14114 1.63600 1.20680 0.82377 0.94570 1.01096 1.20389 0.83091 0.90258 0.84323 1.90478 1.61054 1.50559 1.49244 1.41821 1.12315 1.13589 1.51589 1.19723 0.98321 0.90309 1.38293 0.89612 1.26122 0.96020 1.03356 0.95603 1.69675 1.11345 1.35505 1.38965 0.84873 0.77938 0.76893 0.78318 1.19527 1.19637 1.19519 1.17388 0.87392 0.82384 1.10973 1.91432 1.79963 1.46247 1.94586 0.89577 0.91890 0.88592 0.81533 0.82595 0.84446 0.74335 0.75005 0.88262 0.88519 0.76588 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.83 71.24 0.70 -0.58 16 2 C -0.10 -1.73 5.88 -19.84 -0.12 -1.85 16 3 C -0.11 -1.58 9.70 22.28 0.22 -1.37 16 4 C -0.10 -1.72 10.04 22.26 0.22 -1.50 16 5 C -0.13 -3.35 8.72 22.38 0.20 -3.16 16 6 C 0.13 3.30 6.44 38.15 0.25 3.55 16 7 N -0.67 -17.99 5.32 -316.99 -1.69 -19.68 16 8 C 0.71 22.63 8.37 179.06 1.50 24.13 16 9 O -0.60 -21.92 13.51 -4.02 -0.05 -21.97 16 10 N -0.72 -23.32 5.53 -482.30 -2.67 -25.98 16 11 C 0.14 5.01 6.15 85.64 0.53 5.54 16 12 C 0.43 19.64 7.85 87.66 0.69 20.33 16 13 O -0.63 -31.99 15.24 -3.05 -0.05 -32.03 16 14 N -0.56 -27.64 5.29 -306.98 -1.62 -29.26 16 15 C -0.34 -18.43 9.68 84.04 0.81 -17.62 16 16 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 17 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 18 N -0.92 -48.22 13.05 21.66 0.28 -47.94 16 19 Si 1.00 41.53 29.55 68.60 2.03 43.56 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 C 0.04 0.93 7.25 22.48 0.16 1.09 16 24 F -0.14 -3.37 16.02 44.97 0.72 -2.65 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.83 7.64 -2.39 -0.02 0.81 16 27 H 0.10 0.68 8.09 -2.39 -0.02 0.66 16 28 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 29 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.14 4.00 5.79 -2.91 -0.02 3.99 16 31 H 0.42 9.42 8.47 -92.71 -0.79 8.64 16 32 H 0.41 13.19 7.46 -92.70 -0.69 12.49 16 33 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.40 18.96 7.90 -92.70 -0.73 18.23 16 36 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -66.70 321.58 1.53 -65.17 By element: Atomic # 1 Polarization: 43.32 SS G_CDS: -1.04 Total: 42.28 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: 5.62 Total: 28.50 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.70 Total: -122.86 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -0.10 Total: -54.00 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.72 Total: -2.65 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -66.70 1.53 -65.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350810714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.955 kcal (2) G-P(sol) polarization free energy of solvation -66.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds