Wall clock time and date at job start Fri Apr 10 2020 17:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38195 * 120.02060 * 2 1 4 4 C 1.38238 * 120.10851 * 180.02562 * 3 2 1 5 5 C 1.38306 * 120.15565 * 0.22983 * 4 3 2 6 6 C 1.38268 * 120.04708 * 359.49406 * 5 4 3 7 7 F 1.35092 * 120.06028 * 180.22791 * 6 5 4 8 8 C 1.38761 * 120.02532 * 179.97438 * 2 1 3 9 9 N 1.40072 * 120.07318 * 0.04274 * 8 2 1 10 10 C 1.34776 * 120.00036 * 264.31131 * 9 8 2 11 11 O 1.21585 * 119.99978 * 4.99141 * 10 9 8 12 12 N 1.34783 * 119.99890 * 184.98438 * 10 9 8 13 13 C 1.46498 * 119.99567 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.47070 * 179.97438 * 13 12 10 15 15 O 1.21291 * 119.99437 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00065 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99830 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99754 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00002 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00164 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99834 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46923 * 90.00078 * 21 19 17 23 23 H 1.48497 * 109.46785 * 209.99896 * 21 19 17 24 24 H 1.48496 * 109.47142 * 329.99433 * 21 19 17 25 25 H 1.09001 * 109.47020 * 90.00086 * 1 2 3 26 26 H 1.09005 * 109.46726 * 209.99784 * 1 2 3 27 27 H 1.08999 * 109.47366 * 330.00106 * 1 2 3 28 28 H 1.07999 * 119.94338 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.91911 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.97783 * 179.74831 * 5 4 3 31 31 H 0.97008 * 120.00104 * 84.31831 * 9 8 2 32 32 H 0.96993 * 119.99891 * 0.02562 * 12 10 9 33 33 H 1.08995 * 109.47452 * 299.99865 * 13 12 10 34 34 H 1.09005 * 109.47406 * 59.99926 * 13 12 10 35 35 H 0.96996 * 119.99751 * 359.97438 * 16 14 13 36 36 H 0.97002 * 120.00130 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1966 0.0000 4 6 3.5808 1.1987 -0.0005 5 6 4.2774 0.0039 -0.0059 6 6 3.5922 -1.1971 -0.0001 7 9 4.2723 -2.3643 -0.0007 8 6 2.2013 -1.2014 0.0005 9 7 1.5030 -2.4157 0.0002 10 6 1.2666 -3.0574 1.1615 11 8 1.5786 -2.5398 2.2165 12 7 0.6843 -4.2729 1.1533 13 6 0.4269 -4.9702 2.4158 14 6 -0.2266 -6.2982 2.1319 15 8 -0.4544 -6.6297 0.9876 16 7 -0.5579 -7.1174 3.1496 17 6 -1.1520 -8.3257 2.8913 18 1 -1.3541 -8.6212 1.8723 19 6 -1.4931 -9.1706 3.9404 20 7 -2.0620 -10.3289 3.6928 21 14 -1.1429 -8.6596 5.7027 22 1 -2.3112 -7.9210 6.2454 23 1 -0.8944 -9.8686 6.5284 24 1 0.0555 -7.7833 5.7352 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6578 2.1315 -0.0004 29 1 4.1180 2.1356 -0.0010 30 1 5.3573 0.0089 -0.0104 31 1 1.1897 -2.7947 -0.8360 32 1 0.4357 -4.6859 0.3117 33 1 1.3687 -5.1330 2.9396 34 1 -0.2343 -4.3656 3.0366 35 1 -0.3754 -6.8524 4.0646 36 1 -2.3005 -10.9186 4.4252 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350816462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:23 Heat of formation + Delta-G solvation = -77.774825 kcal Electronic energy + Delta-G solvation = -22780.524517 eV Core-core repulsion = 18986.539287 eV Total energy + Delta-G solvation = -3793.985230 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.00529 -40.54732 -39.12437 -38.27434 -34.94975 -34.49456 -33.76316 -32.65483 -31.81047 -29.89436 -27.82919 -27.02263 -24.42724 -22.82159 -21.96908 -20.85867 -19.68261 -18.93935 -18.38809 -17.75404 -17.09947 -16.83543 -15.78781 -15.58939 -15.40372 -15.35049 -14.93542 -14.51515 -14.24056 -14.14590 -13.86832 -13.68891 -13.49946 -13.15217 -12.51097 -12.47988 -12.22883 -12.17935 -12.02803 -12.00030 -11.58482 -11.24044 -10.64536 -10.27383 -10.06805 -9.70625 -9.59001 -9.06347 -8.88936 -8.84449 -8.78214 -8.31338 -6.41469 -3.94144 0.81365 0.90572 2.58683 2.99643 3.04313 3.12475 3.17850 3.26761 3.55875 3.94440 4.03114 4.20209 4.46025 4.55161 4.57711 4.90322 4.95718 5.13535 5.21339 5.27512 5.37330 5.61762 5.64068 5.75883 5.77123 5.82557 5.90669 6.01063 6.12636 6.29733 6.55052 6.74172 6.84744 7.43984 7.98066 8.04123 8.43181 8.62291 8.80820 9.28960 9.62288 10.70649 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.031709 B = 0.002930 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.827584 B = 9553.572659 C = 9640.681004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 C -0.128 4.128 4 C -0.084 4.084 5 C -0.159 4.159 6 C 0.112 3.888 7 F -0.131 7.131 8 C 0.125 3.875 9 N -0.700 5.700 10 C 0.710 3.290 11 O -0.584 6.584 12 N -0.720 5.720 13 C 0.126 3.874 14 C 0.438 3.562 15 O -0.579 6.579 16 N -0.576 5.576 17 C -0.310 4.310 18 H 0.122 0.878 19 C 0.045 3.955 20 N -0.874 5.874 21 Si 0.879 3.121 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.267 1.267 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.408 0.592 32 H 0.409 0.591 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.375 0.625 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.776 23.273 -6.722 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.050 4.050 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.178 4.178 6 C 0.091 3.909 7 F -0.110 7.110 8 C 0.031 3.969 9 N -0.355 5.355 10 C 0.410 3.590 11 O -0.461 6.461 12 N -0.377 5.377 13 C -0.003 4.003 14 C 0.224 3.776 15 O -0.463 6.463 16 N -0.213 5.213 17 C -0.439 4.439 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.513 5.513 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.192 1.192 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.245 0.755 32 H 0.247 0.753 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.208 0.792 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.807 23.163 -6.397 25.593 hybrid contribution 0.169 -0.476 0.744 0.900 sum 8.977 22.686 -5.653 25.044 Atomic orbital electron populations 1.20765 0.90044 1.03672 1.02620 1.20068 0.96918 0.91457 0.96534 1.21006 0.94146 0.97385 1.02170 1.21023 0.94102 0.97513 0.97611 1.21064 1.00974 0.90873 1.04879 1.18055 0.89269 0.81929 1.01634 1.91516 1.79620 1.46297 1.93522 1.17034 0.88177 0.85708 1.05971 1.42230 1.61802 1.22423 1.09001 1.15803 0.78663 0.80907 0.83629 1.90935 1.58055 1.67654 1.29440 1.44694 1.64765 1.17335 1.10910 1.20840 1.01306 0.92565 0.85556 1.19617 0.85475 0.86331 0.86137 1.90536 1.59087 1.75886 1.20831 1.42109 1.54411 1.17845 1.06957 1.19438 1.35316 0.91623 0.97484 0.86074 1.25065 0.96786 0.95412 0.98622 1.69616 1.39713 1.08990 1.32989 0.86670 0.79130 0.79167 0.84542 1.19373 1.19975 1.19185 0.90592 0.90950 0.90942 0.84963 0.84780 0.84457 0.75499 0.75275 0.89760 0.89742 0.79208 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.77 36.00 0.35 -0.64 16 2 C -0.05 -0.49 5.90 -104.45 -0.62 -1.10 16 3 C -0.13 -1.04 9.70 -39.60 -0.38 -1.42 16 4 C -0.08 -0.64 10.04 -39.56 -0.40 -1.04 16 5 C -0.16 -1.50 10.02 -39.55 -0.40 -1.90 16 6 C 0.11 1.40 7.31 -39.26 -0.29 1.11 16 7 F -0.13 -1.88 17.08 2.25 0.04 -1.84 16 8 C 0.12 1.54 5.27 -83.58 -0.44 1.10 16 9 N -0.70 -8.82 4.12 -14.16 -0.06 -8.88 16 10 C 0.71 11.44 8.22 -86.91 -0.71 10.73 16 11 O -0.58 -11.39 16.32 5.29 0.09 -11.30 16 12 N -0.72 -11.67 5.53 -66.41 -0.37 -12.03 16 13 C 0.13 2.21 6.15 -5.19 -0.03 2.18 16 14 C 0.44 9.63 7.85 -10.98 -0.09 9.55 16 15 O -0.58 -14.54 15.24 5.55 0.08 -14.46 16 16 N -0.58 -13.39 5.09 -10.96 -0.06 -13.44 16 17 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 18 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 19 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 20 N -0.87 -24.96 13.96 55.50 0.77 -24.18 16 21 Si 0.88 19.03 27.74 -169.99 -4.72 14.31 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.78 7.20 -51.93 -0.37 0.41 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 29 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.41 4.01 8.84 -40.82 -0.36 3.65 16 32 H 0.41 6.40 7.46 -40.82 -0.30 6.10 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 36 H 0.28 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 323.33 15.07 4.87 4.87 Total: -1.00 -34.18 323.33 -6.38 -40.55 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -3.79 Total: 15.42 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: -3.25 Total: 10.98 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.29 Total: -58.54 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: 0.17 Total: -25.76 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.72 Total: 14.31 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.18 -6.38 -40.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350816462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.221 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds