Wall clock time and date at job start Fri Apr 10 2020 17:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38195 * 120.02060 * 2 1 4 4 C 1.38238 * 120.10851 * 180.02562 * 3 2 1 5 5 C 1.38306 * 120.15565 * 0.22983 * 4 3 2 6 6 C 1.38268 * 120.04708 * 359.49406 * 5 4 3 7 7 F 1.35092 * 120.06028 * 180.22791 * 6 5 4 8 8 C 1.38761 * 120.02532 * 179.97438 * 2 1 3 9 9 N 1.40072 * 120.07318 * 0.04274 * 8 2 1 10 10 C 1.34776 * 120.00036 * 264.31131 * 9 8 2 11 11 O 1.21585 * 119.99978 * 4.99141 * 10 9 8 12 12 N 1.34783 * 119.99890 * 184.98438 * 10 9 8 13 13 C 1.46498 * 119.99567 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.47070 * 179.97438 * 13 12 10 15 15 O 1.21291 * 119.99437 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00065 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99830 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99754 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00002 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00164 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99834 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46923 * 90.00078 * 21 19 17 23 23 H 1.48497 * 109.46785 * 209.99896 * 21 19 17 24 24 H 1.48496 * 109.47142 * 329.99433 * 21 19 17 25 25 H 1.09001 * 109.47020 * 90.00086 * 1 2 3 26 26 H 1.09005 * 109.46726 * 209.99784 * 1 2 3 27 27 H 1.08999 * 109.47366 * 330.00106 * 1 2 3 28 28 H 1.07999 * 119.94338 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.91911 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.97783 * 179.74831 * 5 4 3 31 31 H 0.97008 * 120.00104 * 84.31831 * 9 8 2 32 32 H 0.96993 * 119.99891 * 0.02562 * 12 10 9 33 33 H 1.08995 * 109.47452 * 299.99865 * 13 12 10 34 34 H 1.09005 * 109.47406 * 59.99926 * 13 12 10 35 35 H 0.96996 * 119.99751 * 359.97438 * 16 14 13 36 36 H 0.97002 * 120.00130 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1966 0.0000 4 6 3.5808 1.1987 -0.0005 5 6 4.2774 0.0039 -0.0059 6 6 3.5922 -1.1971 -0.0001 7 9 4.2723 -2.3643 -0.0007 8 6 2.2013 -1.2014 0.0005 9 7 1.5030 -2.4157 0.0002 10 6 1.2666 -3.0574 1.1615 11 8 1.5786 -2.5398 2.2165 12 7 0.6843 -4.2729 1.1533 13 6 0.4269 -4.9702 2.4158 14 6 -0.2266 -6.2982 2.1319 15 8 -0.4544 -6.6297 0.9876 16 7 -0.5579 -7.1174 3.1496 17 6 -1.1520 -8.3257 2.8913 18 1 -1.3541 -8.6212 1.8723 19 6 -1.4931 -9.1706 3.9404 20 7 -2.0620 -10.3289 3.6928 21 14 -1.1429 -8.6596 5.7027 22 1 -2.3112 -7.9210 6.2454 23 1 -0.8944 -9.8686 6.5284 24 1 0.0555 -7.7833 5.7352 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6578 2.1315 -0.0004 29 1 4.1180 2.1356 -0.0010 30 1 5.3573 0.0089 -0.0104 31 1 1.1897 -2.7947 -0.8360 32 1 0.4357 -4.6859 0.3117 33 1 1.3687 -5.1330 2.9396 34 1 -0.2343 -4.3656 3.0366 35 1 -0.3754 -6.8524 4.0646 36 1 -2.3005 -10.9186 4.4252 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350816462.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:22 Heat of formation + Delta-G solvation = -103.489799 kcal Electronic energy + Delta-G solvation = -22781.639602 eV Core-core repulsion = 18986.539287 eV Total energy + Delta-G solvation = -3795.100315 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.96046 -41.66761 -40.48184 -39.64632 -36.34396 -35.88900 -35.37401 -33.84929 -33.38568 -30.83060 -29.17680 -27.87630 -26.24040 -23.74849 -22.74851 -21.98627 -21.49974 -20.64226 -19.81243 -18.82078 -17.99159 -17.68734 -17.49082 -16.86494 -16.78214 -16.57531 -16.38905 -15.68642 -15.66738 -15.39697 -14.94445 -14.74821 -14.43790 -14.33181 -14.27424 -14.03503 -13.73732 -13.15230 -12.97987 -12.75859 -12.69731 -12.45687 -12.30805 -12.01109 -11.62300 -11.59178 -10.70802 -10.67931 -10.34396 -10.13019 -9.79843 -9.63128 -8.46522 -6.08645 0.05286 0.18273 1.30740 1.33425 1.42005 1.46393 1.76250 1.94640 2.19789 2.55602 2.72889 3.09636 3.11904 3.23894 3.76529 3.95880 3.96307 4.26038 4.30895 4.34113 4.39701 4.47839 4.60614 4.76220 4.94121 5.11125 5.18107 5.22485 5.34447 5.39512 5.46665 5.51974 5.71191 5.86795 5.96831 6.47368 6.76532 6.83334 7.26387 7.39029 7.76088 8.69875 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.031709 B = 0.002930 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.827584 B = 9553.572659 C = 9640.681004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.059 4.059 3 C -0.122 4.122 4 C -0.074 4.074 5 C -0.160 4.160 6 C 0.076 3.924 7 F -0.152 7.152 8 C 0.094 3.906 9 N -0.685 5.685 10 C 0.712 3.288 11 O -0.617 6.617 12 N -0.721 5.721 13 C 0.138 3.862 14 C 0.446 3.554 15 O -0.614 6.614 16 N -0.577 5.577 17 C -0.331 4.331 18 H 0.064 0.936 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.959 3.041 22 H -0.255 1.255 23 H -0.273 1.273 24 H -0.234 1.234 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.166 0.834 29 H 0.173 0.827 30 H 0.155 0.845 31 H 0.418 0.582 32 H 0.412 0.588 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.392 0.608 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 26.854 -5.380 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.092 4.092 5 C -0.180 4.180 6 C 0.056 3.944 7 F -0.131 7.131 8 C 0.001 3.999 9 N -0.340 5.340 10 C 0.413 3.587 11 O -0.497 6.497 12 N -0.379 5.379 13 C 0.010 3.990 14 C 0.234 3.766 15 O -0.499 6.499 16 N -0.217 5.217 17 C -0.460 4.460 18 H 0.082 0.918 19 C -0.207 4.207 20 N -0.565 5.565 21 Si 0.778 3.222 22 H -0.179 1.179 23 H -0.198 1.198 24 H -0.157 1.157 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.183 0.817 29 H 0.190 0.810 30 H 0.172 0.828 31 H 0.257 0.743 32 H 0.250 0.750 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.228 0.772 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.821 26.775 -5.103 28.972 hybrid contribution -0.134 -1.492 0.150 1.506 sum 9.687 25.282 -4.953 27.524 Atomic orbital electron populations 1.20781 0.89242 1.03213 1.03599 1.20335 0.97686 0.91474 0.96536 1.21446 0.94612 0.97764 1.00182 1.21501 0.94166 0.98201 0.95287 1.21393 1.02042 0.90471 1.04053 1.18493 0.89660 0.82315 1.03963 1.91453 1.80012 1.47602 1.94001 1.17369 0.88429 0.86012 1.08137 1.42053 1.61004 1.22532 1.08390 1.15854 0.78195 0.80571 0.84101 1.90898 1.59532 1.68387 1.30899 1.44642 1.65102 1.17555 1.10551 1.20726 1.01833 0.89976 0.86487 1.20426 0.83692 0.87247 0.85264 1.90525 1.59940 1.76992 1.22485 1.41905 1.54791 1.16777 1.08182 1.19029 1.37470 0.93995 0.95549 0.91800 1.26061 0.95693 0.94812 1.04172 1.69777 1.40973 1.10620 1.35132 0.85448 0.80581 0.79436 0.76689 1.17937 1.19820 1.15715 0.88892 0.93478 0.89236 0.81694 0.80969 0.82777 0.74264 0.75047 0.88283 0.87623 0.77197 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.77 71.24 0.70 -1.04 16 2 C -0.06 -1.08 5.90 -19.75 -0.12 -1.20 16 3 C -0.12 -1.54 9.70 22.26 0.22 -1.32 16 4 C -0.07 -0.86 10.04 22.29 0.22 -0.63 16 5 C -0.16 -2.73 10.02 22.29 0.22 -2.51 16 6 C 0.08 1.88 7.31 22.48 0.16 2.04 16 7 F -0.15 -4.45 17.08 44.97 0.77 -3.68 16 8 C 0.09 2.25 5.27 38.15 0.20 2.45 16 9 N -0.69 -17.24 4.12 -316.99 -1.30 -18.55 16 10 C 0.71 22.75 8.22 179.05 1.47 24.22 16 11 O -0.62 -23.74 16.32 -3.98 -0.07 -23.80 16 12 N -0.72 -23.11 5.53 -482.29 -2.67 -25.78 16 13 C 0.14 4.68 6.15 85.63 0.53 5.20 16 14 C 0.45 19.64 7.85 87.66 0.69 20.33 16 15 O -0.61 -31.73 15.24 -3.07 -0.05 -31.78 16 16 N -0.58 -26.69 5.09 -306.98 -1.56 -28.26 16 17 C -0.33 -18.88 10.16 84.04 0.85 -18.03 16 18 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 19 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 20 N -0.93 -54.49 13.96 21.66 0.30 -54.19 16 21 Si 0.96 38.29 27.74 68.60 1.90 40.19 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 25 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 0.98 7.20 -2.38 -0.02 0.96 16 27 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 28 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 29 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 30 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.42 8.31 8.84 -92.70 -0.82 7.49 16 32 H 0.41 12.97 7.46 -92.71 -0.69 12.28 16 33 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 35 H 0.39 15.27 5.76 -92.71 -0.53 14.74 16 36 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -78.64 323.33 2.00 -76.64 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: -0.94 Total: 39.62 kcal Atomic # 6 Polarization: 23.98 SS G_CDS: 5.62 Total: 29.59 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -5.23 Total: -126.77 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -0.11 Total: -55.58 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.77 Total: -3.68 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.19 kcal Total: -78.64 2.00 -76.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350816462.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.851 kcal (2) G-P(sol) polarization free energy of solvation -78.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds