Wall clock time and date at job start Fri Apr 10 2020 17:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38282 * 119.93924 * 2 1 4 4 C 1.38271 * 120.15239 * 180.29496 * 3 2 1 5 5 C 1.38317 * 120.04014 * 359.45085 * 4 3 2 6 6 F 1.35102 * 120.05236 * 180.25053 * 5 4 3 7 7 C 1.39041 * 119.89102 * 0.26826 * 5 4 3 8 8 N 1.40077 * 120.07734 * 180.02562 * 7 5 4 9 9 C 1.34777 * 120.00014 * 145.34378 * 8 7 5 10 10 O 1.21581 * 119.99852 * 4.45027 * 9 8 7 11 11 N 1.34770 * 119.99626 * 184.45254 * 9 8 7 12 12 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47258 * 180.02562 * 12 11 9 14 14 O 1.21301 * 119.99668 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00249 * 180.02562 * 13 12 11 16 16 C 1.37104 * 120.00343 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99434 * 359.97438 * 16 15 13 18 18 C 1.38941 * 120.00033 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00427 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00103 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47059 * 89.99491 * 20 18 16 22 22 H 1.48500 * 109.47390 * 210.00207 * 20 18 16 23 23 H 1.48506 * 109.47039 * 329.99966 * 20 18 16 24 24 C 1.38150 * 119.94752 * 179.74103 * 2 1 3 25 25 H 1.09002 * 109.47359 * 270.25113 * 1 2 3 26 26 H 1.08999 * 109.47112 * 30.25453 * 1 2 3 27 27 H 1.09005 * 109.46887 * 150.25746 * 1 2 3 28 28 H 1.07993 * 119.92848 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.98122 * 179.72116 * 4 3 2 30 30 H 0.97002 * 119.99848 * 325.34368 * 8 7 5 31 31 H 0.96996 * 120.00588 * 359.97438 * 11 9 8 32 32 H 1.08990 * 109.47372 * 300.00387 * 12 11 9 33 33 H 1.08997 * 109.46502 * 60.00589 * 12 11 9 34 34 H 0.96994 * 119.99926 * 359.97438 * 15 13 12 35 35 H 0.96999 * 120.00304 * 179.97438 * 19 18 16 36 36 H 1.08002 * 120.02005 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5799 1.2034 -0.0062 5 6 4.2768 0.0087 -0.0009 6 9 5.6278 0.0135 -0.0018 7 6 3.5847 -1.1972 0.0050 8 7 4.2865 -2.4094 0.0109 9 6 3.7932 -3.4704 0.6798 10 8 2.7014 -3.4007 1.2101 11 7 4.5104 -4.6086 0.7609 12 6 3.9744 -5.7618 1.4885 13 6 4.9639 -6.8969 1.4298 14 8 6.0138 -6.7563 0.8388 15 7 4.6824 -8.0682 2.0340 16 6 5.5828 -9.1008 1.9811 17 1 6.5176 -8.9756 1.4549 18 6 5.2927 -10.3082 2.6045 19 7 4.1556 -10.4603 3.2452 20 14 6.5193 -11.7153 2.5318 21 1 7.4453 -11.6249 3.6891 22 1 5.7918 -13.0090 2.5795 23 1 7.2957 -11.6303 1.2687 24 6 2.1967 -1.1970 0.0054 25 1 -0.3634 0.0045 1.0277 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6551 2.1323 0.0004 29 1 4.1161 2.1409 -0.0107 30 1 5.1275 -2.4853 -0.4664 31 1 5.3813 -4.6644 0.3375 32 1 3.7996 -5.4861 2.5283 33 1 3.0350 -6.0743 1.0326 34 1 3.8430 -8.1805 2.5069 35 1 3.9529 -11.3034 3.6800 36 1 1.6562 -2.1320 0.0092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353263666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:32 Heat of formation + Delta-G solvation = -87.661362 kcal Electronic energy + Delta-G solvation = -22401.153716 eV Core-core repulsion = 18606.739773 eV Total energy + Delta-G solvation = -3794.413943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.01720 -40.63387 -39.01900 -38.17609 -35.11384 -34.52969 -33.77920 -32.36132 -31.42666 -30.07468 -27.50095 -26.78804 -24.63616 -23.34880 -21.71993 -20.78754 -19.66908 -18.69792 -18.17741 -17.73202 -17.11147 -16.47086 -15.90889 -15.53957 -15.44070 -15.11001 -14.66266 -14.45107 -14.19812 -14.10015 -14.07485 -13.78709 -13.59213 -13.38419 -12.41018 -12.25770 -12.18686 -11.98973 -11.90446 -11.65992 -11.58873 -11.15089 -10.52045 -10.48022 -10.34755 -10.07183 -9.66903 -9.00586 -8.80629 -8.68080 -8.20938 -8.13465 -6.54524 -3.96757 0.92396 1.07159 2.49807 3.06085 3.10164 3.20565 3.25801 3.48471 3.70271 4.00559 4.06283 4.21390 4.53558 4.63554 4.82146 4.95643 5.03957 5.13998 5.23893 5.43772 5.51162 5.64172 5.80513 5.85363 5.90857 5.91715 6.01306 6.07998 6.21273 6.38829 6.58340 6.80509 6.83938 7.43237 7.88583 7.96102 8.40799 8.52028 9.01343 9.35344 9.82954 10.62282 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.034102 B = 0.002650 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.864638 B =10565.154278 C =11271.944345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.115 4.115 4 C -0.132 4.132 5 C 0.058 3.942 6 F -0.139 7.139 7 C 0.148 3.852 8 N -0.686 5.686 9 C 0.706 3.294 10 O -0.579 6.579 11 N -0.716 5.716 12 C 0.127 3.873 13 C 0.427 3.573 14 O -0.598 6.598 15 N -0.547 5.547 16 C -0.306 4.306 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.268 1.268 24 C -0.096 4.096 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.411 0.589 31 H 0.410 0.590 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.396 0.604 35 H 0.275 0.725 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 20.437 -6.247 22.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.079 4.079 3 C -0.134 4.134 4 C -0.151 4.151 5 C 0.036 3.964 6 F -0.118 7.118 7 C 0.051 3.949 8 N -0.334 5.334 9 C 0.407 3.593 10 O -0.456 6.456 11 N -0.372 5.372 12 C -0.001 4.001 13 C 0.213 3.787 14 O -0.484 6.484 15 N -0.182 5.182 16 C -0.435 4.435 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.760 3.240 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.117 4.117 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.247 0.753 31 H 0.247 0.753 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.230 0.770 35 H 0.085 0.915 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.982 20.255 -6.004 21.957 hybrid contribution 1.252 -0.912 -0.032 1.549 sum -4.730 19.343 -6.036 20.808 Atomic orbital electron populations 1.20781 0.90477 1.02905 1.02739 1.19900 0.96655 0.92340 0.98968 1.20845 0.92929 0.98015 1.01610 1.20918 0.94861 0.96347 1.02970 1.17490 0.76880 0.93292 1.08720 1.91480 1.28646 1.97303 1.94368 1.17498 0.91749 0.83304 1.02353 1.42467 1.26792 1.09355 1.54774 1.15763 0.84232 0.80007 0.79325 1.90900 1.20238 1.82632 1.51856 1.44775 1.22989 1.11489 1.57981 1.20859 0.96862 0.84909 0.97449 1.19705 0.88755 0.84519 0.85763 1.90503 1.27019 1.82409 1.48511 1.41778 1.19790 1.10423 1.46206 1.19730 1.00715 0.90377 1.32674 0.87652 1.25328 0.97252 0.99014 0.96078 1.69609 1.22668 1.27079 1.34047 0.85808 0.79678 0.79512 0.79008 1.20233 1.20764 1.19301 1.21224 0.91460 0.99685 0.99310 0.90785 0.91416 0.91196 0.85117 0.84515 0.75319 0.75251 0.89701 0.89673 0.76987 0.91535 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.08 -0.78 5.88 -104.64 -0.62 -1.39 16 3 C -0.12 -1.00 9.69 -39.55 -0.38 -1.38 16 4 C -0.13 -1.24 10.02 -39.54 -0.40 -1.64 16 5 C 0.06 0.68 7.31 -39.25 -0.29 0.40 16 6 F -0.14 -1.70 16.96 2.25 0.04 -1.66 16 7 C 0.15 1.91 6.31 -83.59 -0.53 1.39 16 8 N -0.69 -9.05 5.24 -14.17 -0.07 -9.12 16 9 C 0.71 11.29 8.41 -86.92 -0.73 10.56 16 10 O -0.58 -10.58 13.76 5.29 0.07 -10.51 16 11 N -0.72 -11.73 5.53 -66.42 -0.37 -12.10 16 12 C 0.13 2.29 6.15 -5.19 -0.03 2.26 16 13 C 0.43 9.62 7.85 -10.99 -0.09 9.54 16 14 O -0.60 -15.09 15.24 5.54 0.08 -15.00 16 15 N -0.55 -13.38 5.29 -10.96 -0.06 -13.44 16 16 C -0.31 -8.22 9.68 -14.93 -0.14 -8.37 16 17 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 19 N -0.89 -23.66 13.05 55.49 0.72 -22.93 16 20 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 24 C -0.10 -1.21 8.35 -39.41 -0.33 -1.54 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.41 4.50 8.68 -40.82 -0.35 4.15 16 31 H 0.41 6.55 7.45 -40.82 -0.30 6.25 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.40 9.29 7.90 -40.82 -0.32 8.97 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.15 2.14 6.20 -52.49 -0.33 1.81 16 LS Contribution 323.51 15.07 4.88 4.88 Total: -1.00 -31.08 323.51 -6.77 -37.84 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -3.77 Total: 16.77 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -3.27 Total: 9.92 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.22 Total: -57.59 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: 0.16 Total: -25.51 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.08 -6.77 -37.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353263666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.819 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds