Wall clock time and date at job start Fri Apr 10 2020 17:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38282 * 119.93924 * 2 1 4 4 C 1.38271 * 120.15239 * 180.29496 * 3 2 1 5 5 C 1.38317 * 120.04014 * 359.45085 * 4 3 2 6 6 F 1.35102 * 120.05236 * 180.25053 * 5 4 3 7 7 C 1.39041 * 119.89102 * 0.26826 * 5 4 3 8 8 N 1.40077 * 120.07734 * 180.02562 * 7 5 4 9 9 C 1.34777 * 120.00014 * 145.34378 * 8 7 5 10 10 O 1.21581 * 119.99852 * 4.45027 * 9 8 7 11 11 N 1.34770 * 119.99626 * 184.45254 * 9 8 7 12 12 C 1.46507 * 119.99719 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47258 * 180.02562 * 12 11 9 14 14 O 1.21301 * 119.99668 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00249 * 180.02562 * 13 12 11 16 16 C 1.37104 * 120.00343 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99434 * 359.97438 * 16 15 13 18 18 C 1.38941 * 120.00033 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00427 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00103 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47059 * 89.99491 * 20 18 16 22 22 H 1.48500 * 109.47390 * 210.00207 * 20 18 16 23 23 H 1.48506 * 109.47039 * 329.99966 * 20 18 16 24 24 C 1.38150 * 119.94752 * 179.74103 * 2 1 3 25 25 H 1.09002 * 109.47359 * 270.25113 * 1 2 3 26 26 H 1.08999 * 109.47112 * 30.25453 * 1 2 3 27 27 H 1.09005 * 109.46887 * 150.25746 * 1 2 3 28 28 H 1.07993 * 119.92848 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.98122 * 179.72116 * 4 3 2 30 30 H 0.97002 * 119.99848 * 325.34368 * 8 7 5 31 31 H 0.96996 * 120.00588 * 359.97438 * 11 9 8 32 32 H 1.08990 * 109.47372 * 300.00387 * 12 11 9 33 33 H 1.08997 * 109.46502 * 60.00589 * 12 11 9 34 34 H 0.96994 * 119.99926 * 359.97438 * 15 13 12 35 35 H 0.96999 * 120.00304 * 179.97438 * 19 18 16 36 36 H 1.08002 * 120.02005 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5799 1.2034 -0.0062 5 6 4.2768 0.0087 -0.0009 6 9 5.6278 0.0135 -0.0018 7 6 3.5847 -1.1972 0.0050 8 7 4.2865 -2.4094 0.0109 9 6 3.7932 -3.4704 0.6798 10 8 2.7014 -3.4007 1.2101 11 7 4.5104 -4.6086 0.7609 12 6 3.9744 -5.7618 1.4885 13 6 4.9639 -6.8969 1.4298 14 8 6.0138 -6.7563 0.8388 15 7 4.6824 -8.0682 2.0340 16 6 5.5828 -9.1008 1.9811 17 1 6.5176 -8.9756 1.4549 18 6 5.2927 -10.3082 2.6045 19 7 4.1556 -10.4603 3.2452 20 14 6.5193 -11.7153 2.5318 21 1 7.4453 -11.6249 3.6891 22 1 5.7918 -13.0090 2.5795 23 1 7.2957 -11.6303 1.2687 24 6 2.1967 -1.1970 0.0054 25 1 -0.3634 0.0045 1.0277 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6551 2.1323 0.0004 29 1 4.1161 2.1409 -0.0107 30 1 5.1275 -2.4853 -0.4664 31 1 5.3813 -4.6644 0.3375 32 1 3.7996 -5.4861 2.5283 33 1 3.0350 -6.0743 1.0326 34 1 3.8430 -8.1805 2.5069 35 1 3.9529 -11.3034 3.6800 36 1 1.6562 -2.1320 0.0092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353263666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:31 Heat of formation + Delta-G solvation = -109.457039 kcal Electronic energy + Delta-G solvation = -22402.098847 eV Core-core repulsion = 18606.739773 eV Total energy + Delta-G solvation = -3795.359074 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.91853 -41.80227 -40.36263 -39.60380 -36.37203 -36.07802 -35.42029 -33.39868 -33.10638 -31.08925 -28.99378 -27.54020 -26.44526 -24.32584 -22.62586 -21.94408 -21.40449 -20.17323 -19.81886 -18.81843 -18.09171 -17.55596 -17.34993 -16.85058 -16.66559 -16.56591 -16.27228 -15.78899 -15.63499 -15.25822 -15.17935 -14.90468 -14.47133 -14.32090 -14.00988 -13.74866 -13.55522 -13.03981 -12.91921 -12.84722 -12.68597 -12.46990 -12.40381 -12.13300 -11.58496 -11.55322 -11.23618 -10.58961 -10.34672 -10.10764 -9.66501 -9.12927 -8.52310 -6.02605 0.08161 0.24427 1.30414 1.35594 1.43164 1.55458 1.84187 1.92192 2.26944 2.62210 2.88961 3.14874 3.15195 3.20802 3.77354 3.91906 4.16896 4.24059 4.29034 4.39052 4.41714 4.44950 4.80341 4.88083 4.92744 5.05501 5.17188 5.19564 5.29231 5.36404 5.37386 5.61873 5.70439 5.90502 5.97167 6.46261 6.74467 7.02180 7.25455 7.42696 7.92596 8.64569 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.034102 B = 0.002650 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.864638 B =10565.154278 C =11271.944345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.079 4.079 3 C -0.103 4.103 4 C -0.126 4.126 5 C 0.044 3.956 6 F -0.146 7.146 7 C 0.121 3.879 8 N -0.677 5.677 9 C 0.709 3.291 10 O -0.603 6.603 11 N -0.716 5.716 12 C 0.141 3.859 13 C 0.433 3.567 14 O -0.625 6.625 15 N -0.558 5.558 16 C -0.337 4.337 17 H 0.086 0.914 18 C -0.010 4.010 19 N -0.915 5.915 20 Si 0.996 3.004 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.270 1.270 24 C -0.117 4.117 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.169 0.831 29 H 0.165 0.835 30 H 0.420 0.580 31 H 0.412 0.588 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.400 0.600 35 H 0.280 0.720 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 22.180 -6.397 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.080 4.080 3 C -0.122 4.122 4 C -0.144 4.144 5 C 0.023 3.977 6 F -0.124 7.124 7 C 0.025 3.975 8 N -0.325 5.325 9 C 0.409 3.591 10 O -0.482 6.482 11 N -0.373 5.373 12 C 0.013 3.987 13 C 0.220 3.780 14 O -0.513 6.513 15 N -0.193 5.193 16 C -0.467 4.467 17 H 0.104 0.896 18 C -0.211 4.211 19 N -0.555 5.555 20 Si 0.819 3.181 21 H -0.196 1.196 22 H -0.196 1.196 23 H -0.195 1.195 24 C -0.137 4.137 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.186 0.814 29 H 0.182 0.818 30 H 0.257 0.743 31 H 0.250 0.750 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.530 22.037 -6.167 23.797 hybrid contribution 1.367 -1.305 -0.021 1.891 sum -5.163 20.731 -6.188 22.243 Atomic orbital electron populations 1.20847 0.88757 1.03982 1.03281 1.20234 0.98002 0.91954 0.97811 1.21276 0.92731 0.98859 0.99318 1.21314 0.95393 0.96461 1.01276 1.17710 0.76752 0.93694 1.09579 1.91462 1.29102 1.97349 1.94524 1.17737 0.92166 0.83381 1.04243 1.42305 1.27043 1.08980 1.54173 1.15777 0.83828 0.80216 0.79288 1.90884 1.21242 1.83113 1.53009 1.44682 1.23124 1.11372 1.58138 1.20665 0.95733 0.83750 0.98530 1.20384 0.88853 0.84838 0.83974 1.90481 1.28533 1.83043 1.49267 1.41817 1.19746 1.10753 1.46979 1.19729 1.00937 0.91928 1.34077 0.89604 1.26117 0.98925 1.00788 0.95221 1.69672 1.23745 1.27913 1.34198 0.84877 0.77573 0.76719 0.78881 1.19576 1.19589 1.19476 1.21186 0.91464 1.00046 1.01014 0.90403 0.88811 0.91706 0.81387 0.81753 0.74295 0.75016 0.88642 0.88333 0.76604 0.91017 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.01 71.24 0.71 -0.74 16 2 C -0.08 -1.44 5.88 -19.87 -0.12 -1.56 16 3 C -0.10 -1.44 9.69 22.29 0.22 -1.22 16 4 C -0.13 -2.02 10.02 22.30 0.22 -1.79 16 5 C 0.04 0.99 7.31 22.48 0.16 1.16 16 6 F -0.15 -3.43 16.96 44.97 0.76 -2.67 16 7 C 0.12 3.11 6.31 38.15 0.24 3.35 16 8 N -0.68 -18.06 5.24 -317.00 -1.66 -19.72 16 9 C 0.71 22.87 8.41 179.06 1.51 24.37 16 10 O -0.60 -22.34 13.76 -3.97 -0.05 -22.39 16 11 N -0.72 -23.60 5.53 -482.31 -2.67 -26.27 16 12 C 0.14 5.08 6.15 85.63 0.53 5.61 16 13 C 0.43 19.75 7.85 87.66 0.69 20.44 16 14 O -0.63 -32.12 15.24 -3.10 -0.05 -32.16 16 15 N -0.56 -27.74 5.29 -306.99 -1.62 -29.36 16 16 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 17 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 18 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 19 N -0.92 -48.35 13.05 21.66 0.28 -48.06 16 20 Si 1.00 41.59 29.55 68.60 2.03 43.62 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 C -0.12 -2.92 8.35 22.38 0.19 -2.73 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 0.72 8.09 -2.39 -0.02 0.70 16 27 H 0.06 0.91 8.08 -2.38 -0.02 0.89 16 28 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 29 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.42 9.33 8.68 -92.71 -0.80 8.52 16 31 H 0.41 13.31 7.45 -92.71 -0.69 12.62 16 32 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 35 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.13 3.82 6.20 -2.91 -0.02 3.81 16 Total: -1.00 -67.18 323.51 1.59 -65.59 By element: Atomic # 1 Polarization: 43.31 SS G_CDS: -1.06 Total: 42.25 kcal Atomic # 6 Polarization: 23.54 SS G_CDS: 5.63 Total: 29.17 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -5.67 Total: -123.41 kcal Atomic # 8 Polarization: -54.46 SS G_CDS: -0.10 Total: -54.56 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.76 Total: -2.67 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -67.18 1.59 -65.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353263666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.863 kcal (2) G-P(sol) polarization free energy of solvation -67.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds