Wall clock time and date at job start Fri Apr 10 2020 17:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 119.99980 * 2 1 4 4 N 1.34773 * 120.00157 * 179.97438 * 2 1 3 5 5 C 1.40019 * 120.00437 * 185.27519 * 4 2 1 6 6 C 1.38887 * 120.01074 * 33.47116 * 5 4 2 7 7 C 1.38207 * 120.08633 * 180.30053 * 6 5 4 8 8 C 1.38305 * 120.11659 * 359.45328 * 7 6 5 9 9 F 1.35100 * 119.98465 * 180.25188 * 8 7 6 10 10 C 1.39097 * 120.02643 * 0.27517 * 8 7 6 11 11 N 1.39842 * 120.04310 * 180.02562 * 10 8 7 12 12 C 1.46495 * 119.99893 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47123 * 180.02562 * 12 11 10 14 14 O 1.21296 * 120.00068 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00456 * 179.97438 * 13 12 11 16 16 C 1.37092 * 120.00092 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00393 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99926 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99625 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00243 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47003 * 89.99388 * 20 18 16 22 22 H 1.48494 * 109.46996 * 209.99819 * 20 18 16 23 23 H 1.48498 * 109.46907 * 329.99796 * 20 18 16 24 24 C 1.38736 * 119.91270 * 359.97438 * 10 8 7 25 25 H 1.09000 * 109.46837 * 240.00632 * 1 2 3 26 26 H 1.08995 * 109.47149 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47171 * 120.00811 * 1 2 3 28 28 H 0.97008 * 119.99845 * 5.26998 * 4 2 1 29 29 H 1.07998 * 119.96094 * 0.02611 * 6 5 4 30 30 H 1.07996 * 119.94129 * 179.72329 * 7 6 5 31 31 H 0.97003 * 119.99706 * 359.97438 * 11 10 8 32 32 H 1.09005 * 109.47395 * 299.99951 * 12 11 10 33 33 H 1.08996 * 109.47486 * 60.00248 * 12 11 10 34 34 H 0.97006 * 119.99421 * 359.97438 * 15 13 12 35 35 H 0.97000 * 119.99615 * 179.97438 * 19 18 16 36 36 H 1.08003 * 120.05984 * 179.97438 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5767 -1.1697 0.1120 6 6 4.2145 -0.1990 0.8735 7 6 5.5925 -0.1964 0.9795 8 6 6.3398 -1.1668 0.3371 9 9 7.6864 -1.1647 0.4468 10 6 5.7056 -2.1446 -0.4221 11 7 6.4609 -3.1263 -1.0714 12 6 5.7919 -4.1559 -1.8704 13 6 6.8230 -5.0845 -2.4581 14 8 8.0010 -4.9037 -2.2323 15 7 6.4365 -6.1160 -3.2348 16 6 7.3746 -6.9610 -3.7690 17 1 8.4234 -6.8000 -3.5679 18 6 6.9761 -8.0241 -4.5702 19 7 5.6999 -8.2197 -4.8153 20 14 8.2543 -9.1751 -5.2988 21 1 8.5011 -10.2986 -4.3597 22 1 7.7583 -9.7105 -6.5920 23 1 9.5195 -8.4309 -5.5237 24 6 4.3228 -2.1453 -0.5336 25 1 -0.3633 -0.5137 0.8901 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 1.6990 -2.0055 -0.0763 29 1 3.6333 0.5574 1.3798 30 1 6.0864 0.5621 1.5686 31 1 7.4277 -3.1254 -0.9927 32 1 5.1119 -4.7239 -1.2353 33 1 5.2282 -3.6828 -2.6744 34 1 5.4944 -6.2608 -3.4151 35 1 5.4217 -8.9616 -5.3749 36 1 3.8279 -2.9031 -1.1229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359798187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:34 Heat of formation + Delta-G solvation = -90.167123 kcal Electronic energy + Delta-G solvation = -22477.885603 eV Core-core repulsion = 18683.363003 eV Total energy + Delta-G solvation = -3794.522601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.54311 -40.60981 -38.96007 -38.16020 -35.60941 -34.44307 -33.94375 -31.44933 -30.88061 -29.89930 -28.55871 -26.67481 -24.55907 -22.76614 -22.41245 -20.44257 -19.55953 -18.45414 -18.02186 -17.32159 -17.20365 -16.57174 -15.96839 -15.50900 -15.40681 -14.92010 -14.73758 -14.71360 -14.37315 -14.06708 -13.84477 -13.57032 -13.19561 -13.16175 -12.78166 -12.76327 -12.54592 -12.18586 -12.05766 -11.66786 -11.21416 -11.15829 -10.59975 -10.49231 -10.35489 -10.21535 -9.74473 -9.66897 -8.68434 -8.33077 -8.15314 -7.23531 -6.56800 -3.98428 1.11779 1.51140 2.34799 2.80338 3.08470 3.19259 3.24405 3.49280 3.66936 3.74433 4.08551 4.40238 4.44304 4.77941 4.81597 4.88519 4.97561 5.11077 5.22116 5.29003 5.36628 5.51965 5.54703 5.67199 5.78906 6.00366 6.07428 6.19425 6.32422 6.36119 6.82420 7.15634 7.33068 7.41832 7.84702 7.85955 7.95147 8.40274 9.00353 9.33282 9.81820 10.60186 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.003102 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.857302 B = 9024.787414 C =10323.878358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.524 6.524 4 N -0.673 5.673 5 C 0.183 3.817 6 C -0.162 4.162 7 C -0.085 4.085 8 C 0.001 3.999 9 F -0.143 7.143 10 C 0.221 3.779 11 N -0.718 5.718 12 C 0.113 3.887 13 C 0.428 3.572 14 O -0.592 6.592 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.896 5.896 20 Si 0.933 3.067 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.268 1.268 24 C -0.209 4.209 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.412 0.588 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.417 0.583 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.643 11.739 9.648 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.399 6.399 4 N -0.319 5.319 5 C 0.088 3.912 6 C -0.185 4.185 7 C -0.105 4.105 8 C -0.023 4.023 9 F -0.122 7.122 10 C 0.113 3.887 11 N -0.348 5.348 12 C -0.016 4.016 13 C 0.213 3.787 14 O -0.478 6.478 15 N -0.185 5.185 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.176 4.176 19 N -0.537 5.537 20 Si 0.759 3.241 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.235 4.235 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.248 0.752 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.256 0.744 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.626 12.299 9.541 19.428 hybrid contribution 0.257 -1.263 -0.609 1.425 sum -11.369 11.037 8.932 18.189 Atomic orbital electron populations 1.21932 0.90749 1.05946 1.04653 1.20997 0.90851 0.83156 0.75218 1.90760 1.70586 1.31197 1.47338 1.43615 1.05329 1.09993 1.72921 1.17377 0.82310 0.96128 0.95343 1.20602 0.93504 1.01532 1.02842 1.20732 0.93655 0.97206 0.98899 1.17123 0.77331 1.00484 1.07388 1.91450 1.29053 1.96423 1.95245 1.17524 0.90897 0.88534 0.91775 1.44476 1.09813 1.27909 1.52605 1.20984 0.95395 0.89997 0.95188 1.19696 0.89338 0.84620 0.85001 1.90529 1.18135 1.74656 1.64443 1.41782 1.10188 1.24068 1.42464 1.19737 0.91075 1.05940 1.26631 0.87695 1.25311 0.97024 0.98150 0.97160 1.69605 1.14562 1.31347 1.38155 0.85811 0.80217 0.79831 0.78203 1.20228 1.20760 1.19287 1.20155 0.91112 1.04417 1.07818 0.88996 0.88621 0.89022 0.75175 0.84658 0.84705 0.74368 0.90425 0.90442 0.77160 0.91600 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.32 36.01 0.37 -0.43 16 2 C 0.51 4.75 7.68 -10.98 -0.08 4.67 16 3 O -0.52 -7.20 14.78 5.56 0.08 -7.12 16 4 N -0.67 -5.85 5.34 -9.87 -0.05 -5.90 16 5 C 0.18 2.20 6.27 -83.69 -0.53 1.67 16 6 C -0.16 -2.07 8.65 -39.35 -0.34 -2.41 16 7 C -0.08 -1.10 10.01 -39.57 -0.40 -1.50 16 8 C 0.00 0.02 7.31 -39.24 -0.29 -0.27 16 9 F -0.14 -2.33 16.63 2.25 0.04 -2.29 16 10 C 0.22 3.35 6.66 -83.70 -0.56 2.80 16 11 N -0.72 -12.25 5.71 -59.76 -0.34 -12.59 16 12 C 0.11 1.90 5.39 -5.20 -0.03 1.87 16 13 C 0.43 9.68 7.85 -10.98 -0.09 9.59 16 14 O -0.59 -15.56 15.24 5.54 0.08 -15.47 16 15 N -0.55 -13.27 5.29 -10.96 -0.06 -13.32 16 16 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 17 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 19 N -0.90 -23.34 13.05 55.50 0.72 -22.61 16 20 Si 0.93 20.37 29.55 -169.99 -5.02 15.34 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.21 -2.67 9.22 -39.21 -0.36 -3.03 16 25 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.41 2.18 8.82 -40.82 -0.36 1.82 16 29 H 0.14 1.72 6.42 -52.49 -0.34 1.38 16 30 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.42 7.93 6.92 -40.82 -0.28 7.65 16 32 H 0.08 1.14 7.95 -51.93 -0.41 0.72 16 33 H 0.08 1.17 7.95 -51.93 -0.41 0.75 16 34 H 0.39 8.94 7.90 -40.82 -0.32 8.61 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 36 H 0.14 1.48 6.73 -52.48 -0.35 1.13 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -32.86 322.08 -5.91 -38.77 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -3.68 Total: 15.14 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -2.53 Total: 5.20 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.27 Total: -54.43 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.17 Total: -22.59 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.86 -5.91 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359798187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.395 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds