Wall clock time and date at job start Fri Apr 10 2020 17:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 119.99980 * 2 1 4 4 N 1.34773 * 120.00157 * 179.97438 * 2 1 3 5 5 C 1.40019 * 120.00437 * 185.27519 * 4 2 1 6 6 C 1.38887 * 120.01074 * 33.47116 * 5 4 2 7 7 C 1.38207 * 120.08633 * 180.30053 * 6 5 4 8 8 C 1.38305 * 120.11659 * 359.45328 * 7 6 5 9 9 F 1.35100 * 119.98465 * 180.25188 * 8 7 6 10 10 C 1.39097 * 120.02643 * 0.27517 * 8 7 6 11 11 N 1.39842 * 120.04310 * 180.02562 * 10 8 7 12 12 C 1.46495 * 119.99893 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47123 * 180.02562 * 12 11 10 14 14 O 1.21296 * 120.00068 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00456 * 179.97438 * 13 12 11 16 16 C 1.37092 * 120.00092 * 180.02562 * 15 13 12 17 17 H 1.07999 * 120.00393 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99926 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99625 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00243 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47003 * 89.99388 * 20 18 16 22 22 H 1.48494 * 109.46996 * 209.99819 * 20 18 16 23 23 H 1.48498 * 109.46907 * 329.99796 * 20 18 16 24 24 C 1.38736 * 119.91270 * 359.97438 * 10 8 7 25 25 H 1.09000 * 109.46837 * 240.00632 * 1 2 3 26 26 H 1.08995 * 109.47149 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47171 * 120.00811 * 1 2 3 28 28 H 0.97008 * 119.99845 * 5.26998 * 4 2 1 29 29 H 1.07998 * 119.96094 * 0.02611 * 6 5 4 30 30 H 1.07996 * 119.94129 * 179.72329 * 7 6 5 31 31 H 0.97003 * 119.99706 * 359.97438 * 11 10 8 32 32 H 1.09005 * 109.47395 * 299.99951 * 12 11 10 33 33 H 1.08996 * 109.47486 * 60.00248 * 12 11 10 34 34 H 0.97006 * 119.99421 * 359.97438 * 15 13 12 35 35 H 0.97000 * 119.99615 * 179.97438 * 19 18 16 36 36 H 1.08003 * 120.05984 * 179.97438 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5767 -1.1697 0.1120 6 6 4.2145 -0.1990 0.8735 7 6 5.5925 -0.1964 0.9795 8 6 6.3398 -1.1668 0.3371 9 9 7.6864 -1.1647 0.4468 10 6 5.7056 -2.1446 -0.4221 11 7 6.4609 -3.1263 -1.0714 12 6 5.7919 -4.1559 -1.8704 13 6 6.8230 -5.0845 -2.4581 14 8 8.0010 -4.9037 -2.2323 15 7 6.4365 -6.1160 -3.2348 16 6 7.3746 -6.9610 -3.7690 17 1 8.4234 -6.8000 -3.5679 18 6 6.9761 -8.0241 -4.5702 19 7 5.6999 -8.2197 -4.8153 20 14 8.2543 -9.1751 -5.2988 21 1 8.5011 -10.2986 -4.3597 22 1 7.7583 -9.7105 -6.5920 23 1 9.5195 -8.4309 -5.5237 24 6 4.3228 -2.1453 -0.5336 25 1 -0.3633 -0.5137 0.8901 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 1.6990 -2.0055 -0.0763 29 1 3.6333 0.5574 1.3798 30 1 6.0864 0.5621 1.5686 31 1 7.4277 -3.1254 -0.9927 32 1 5.1119 -4.7239 -1.2353 33 1 5.2282 -3.6828 -2.6744 34 1 5.4944 -6.2608 -3.4151 35 1 5.4217 -8.9616 -5.3749 36 1 3.8279 -2.9031 -1.1229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359798187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:33 Heat of formation + Delta-G solvation = -114.749416 kcal Electronic energy + Delta-G solvation = -22478.951571 eV Core-core repulsion = 18683.363003 eV Total energy + Delta-G solvation = -3795.588569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.73314 -41.47989 -40.45421 -39.45944 -36.81036 -36.00447 -35.25779 -33.39232 -31.58149 -31.08843 -29.44179 -28.07698 -26.27128 -23.73630 -23.51565 -21.40221 -21.16568 -20.08446 -19.42894 -18.37782 -18.06142 -17.80195 -17.30153 -16.75058 -16.58271 -16.31474 -16.20553 -16.16446 -15.68243 -15.29734 -14.94505 -14.80837 -14.37088 -14.18859 -14.01132 -13.72434 -13.54822 -13.43233 -13.20878 -12.97499 -12.90139 -12.47994 -12.25083 -12.14080 -11.65854 -11.57501 -11.08168 -10.72475 -10.56913 -10.10472 -9.30797 -8.53025 -8.40107 -6.02265 0.10686 0.45265 1.34791 1.41629 1.53244 1.60556 1.90782 2.00873 2.20049 2.37153 2.71599 3.12315 3.14451 3.36397 3.76537 3.90570 4.15271 4.20392 4.28271 4.36807 4.46096 4.46646 4.62425 4.64314 4.72808 5.02244 5.15030 5.23343 5.33375 5.36661 5.37644 5.76515 5.90961 6.18736 6.47944 6.49215 6.55748 7.03804 7.16534 7.43451 7.96779 8.63656 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.003102 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.857302 B = 9024.787414 C =10323.878358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.505 3.495 3 O -0.574 6.574 4 N -0.661 5.661 5 C 0.187 3.813 6 C -0.166 4.166 7 C -0.082 4.082 8 C -0.024 4.024 9 F -0.157 7.157 10 C 0.205 3.795 11 N -0.732 5.732 12 C 0.128 3.872 13 C 0.427 3.573 14 O -0.633 6.633 15 N -0.557 5.557 16 C -0.339 4.339 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.912 5.912 20 Si 0.992 3.008 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.275 1.275 24 C -0.203 4.203 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.431 0.569 29 H 0.137 0.863 30 H 0.152 0.848 31 H 0.404 0.596 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.402 0.598 35 H 0.281 0.719 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.164 11.440 9.661 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.296 3.704 3 O -0.452 6.452 4 N -0.308 5.308 5 C 0.091 3.909 6 C -0.188 4.188 7 C -0.101 4.101 8 C -0.049 4.049 9 F -0.136 7.136 10 C 0.099 3.901 11 N -0.362 5.362 12 C 0.000 4.000 13 C 0.214 3.786 14 O -0.521 6.521 15 N -0.193 5.193 16 C -0.469 4.469 17 H 0.097 0.903 18 C -0.207 4.207 19 N -0.552 5.552 20 Si 0.815 3.185 21 H -0.195 1.195 22 H -0.193 1.193 23 H -0.200 1.200 24 C -0.229 4.229 25 H 0.136 0.864 26 H 0.111 0.889 27 H 0.133 0.867 28 H 0.271 0.729 29 H 0.155 0.845 30 H 0.170 0.830 31 H 0.241 0.759 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.236 0.764 35 H 0.090 0.910 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.236 11.985 9.563 20.922 hybrid contribution 0.959 -1.076 -0.550 1.543 sum -13.277 10.909 9.013 19.404 Atomic orbital electron populations 1.21963 0.86662 1.06604 1.06974 1.21924 0.92670 0.82258 0.73535 1.90745 1.71890 1.32935 1.49629 1.43635 1.03948 1.11110 1.72132 1.17489 0.84022 0.95192 0.94186 1.20754 0.93418 1.01722 1.02888 1.20925 0.93849 0.96941 0.98433 1.17425 0.76986 1.01659 1.08797 1.91407 1.30125 1.96589 1.95471 1.17724 0.91754 0.88365 0.92250 1.44449 1.09263 1.28806 1.53697 1.20926 0.93603 0.89232 0.96206 1.20678 0.89948 0.84367 0.83597 1.90503 1.20565 1.75590 1.65485 1.41789 1.10071 1.24408 1.43003 1.19663 0.90677 1.07839 1.28698 0.90306 1.26017 0.98943 0.98850 0.96850 1.69647 1.15509 1.31814 1.38196 0.84945 0.77685 0.77871 0.77969 1.19531 1.19334 1.19985 1.20343 0.90107 1.04887 1.07531 0.86391 0.88882 0.86677 0.72931 0.84521 0.83004 0.75915 0.87468 0.87972 0.76362 0.90985 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 10.32 71.24 0.74 -0.19 16 2 C 0.51 8.17 7.68 87.66 0.67 8.84 16 3 O -0.57 -15.08 14.78 -3.04 -0.04 -15.13 16 4 N -0.66 -9.52 5.34 -303.51 -1.62 -11.14 16 5 C 0.19 4.08 6.27 38.11 0.24 4.32 16 6 C -0.17 -4.02 8.65 22.42 0.19 -3.83 16 7 C -0.08 -2.08 10.01 22.28 0.22 -1.86 16 8 C -0.02 -0.74 7.31 22.49 0.16 -0.57 16 9 F -0.16 -5.28 16.63 44.97 0.75 -4.53 16 10 C 0.21 6.07 6.66 38.19 0.25 6.33 16 11 N -0.73 -24.76 5.71 -342.98 -1.96 -26.72 16 12 C 0.13 4.13 5.39 85.63 0.46 4.59 16 13 C 0.43 19.42 7.85 87.66 0.69 20.11 16 14 O -0.63 -34.30 15.24 -3.08 -0.05 -34.35 16 15 N -0.56 -27.03 5.29 -306.98 -1.62 -28.65 16 16 C -0.34 -18.59 9.68 84.04 0.81 -17.77 16 17 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 18 C -0.01 -0.28 5.50 84.93 0.47 0.19 16 19 N -0.91 -46.69 13.05 21.66 0.28 -46.41 16 20 Si 0.99 41.44 29.55 68.60 2.03 43.47 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 C -0.20 -4.73 9.22 22.51 0.21 -4.53 16 25 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.09 0.64 8.12 -2.39 -0.02 0.63 16 27 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.43 2.89 8.82 -92.70 -0.82 2.07 16 29 H 0.14 3.33 6.42 -2.91 -0.02 3.31 16 30 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.40 15.82 6.92 -92.71 -0.64 15.18 16 32 H 0.11 2.85 7.95 -2.38 -0.02 2.83 16 33 H 0.10 2.82 7.95 -2.39 -0.02 2.80 16 34 H 0.40 18.01 7.90 -92.70 -0.73 17.28 16 35 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 36 H 0.16 2.87 6.73 -2.91 -0.02 2.85 16 Total: -1.00 -73.17 322.08 1.87 -71.31 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -1.02 Total: 36.51 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 5.12 Total: 15.63 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -4.92 Total: -112.92 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -0.09 Total: -49.47 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.75 Total: -4.53 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -73.17 1.87 -71.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359798187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.444 kcal (2) G-P(sol) polarization free energy of solvation -73.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds