Wall clock time and date at job start Fri Apr 10 2020 17:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47009 * 2 1 4 4 C 1.50694 * 109.46729 * 240.00150 * 2 1 3 5 5 H 1.08005 * 120.00179 * 240.00047 * 4 2 1 6 6 C 1.37877 * 120.00582 * 59.99980 * 4 2 1 7 7 N 1.31511 * 120.00439 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99503 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47243 * 269.99785 * 8 6 4 10 10 H 1.48504 * 109.47388 * 30.00164 * 8 6 4 11 11 H 1.48506 * 109.47065 * 149.99996 * 8 6 4 12 12 N 1.46495 * 109.47061 * 119.99953 * 2 1 3 13 13 C 1.46506 * 120.00104 * 59.99761 * 12 2 1 14 14 C 1.34777 * 120.00219 * 239.99840 * 12 2 1 15 15 O 1.21362 * 119.99462 * 356.42551 * 14 12 2 16 16 C 1.49351 * 120.00054 * 176.43079 * 14 12 2 17 17 O 1.21376 * 120.00160 * 5.91967 * 16 14 12 18 18 N 1.34778 * 119.99595 * 185.91866 * 16 14 12 19 19 C 1.39751 * 119.99747 * 175.27430 * 18 16 14 20 20 C 1.38956 * 120.47971 * 214.69138 * 19 18 16 21 21 N 1.31778 * 120.70960 * 179.72980 * 20 19 18 22 22 C 1.31876 * 121.82059 * 0.58425 * 21 20 19 23 23 C 1.38476 * 120.89848 * 359.67757 * 22 21 20 24 24 F 1.35099 * 120.40544 * 180.02562 * 23 22 21 25 25 C 1.38733 * 119.19292 * 0.02562 * 23 22 21 26 26 H 1.08996 * 109.46951 * 59.99627 * 1 2 3 27 27 H 1.08991 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46595 * 299.99811 * 1 2 3 29 29 H 0.97002 * 120.00071 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46629 * 95.97690 * 13 12 2 31 31 H 1.08993 * 109.47273 * 215.98089 * 13 12 2 32 32 H 1.08999 * 109.46814 * 335.98863 * 13 12 2 33 33 H 0.97001 * 120.00257 * 355.27727 * 18 16 14 34 34 H 1.07999 * 119.64837 * 359.97438 * 20 19 18 35 35 H 1.08005 * 119.54753 * 179.70748 * 22 21 20 36 36 H 1.08003 * 120.82946 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 2.1379 -0.8590 -3.5566 8 14 0.6247 1.2790 -2.6541 9 1 -0.8029 0.8726 -2.6997 10 1 0.8470 2.1765 -1.4920 11 1 0.9758 1.9951 -3.9068 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0833 15 8 3.1400 1.1057 1.8596 16 6 3.2252 -0.7144 3.3416 17 8 2.9699 -1.8880 3.5165 18 7 3.8985 -0.0236 4.2829 19 6 4.2162 -0.6301 5.5012 20 6 4.2250 0.1112 6.6765 21 7 4.5188 -0.4573 7.8285 22 6 4.8250 -1.7371 7.9143 23 6 4.8430 -2.5411 6.7869 24 9 5.1576 -3.8512 6.8864 25 6 4.5342 -1.9848 5.5541 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.9039 -0.5274 -4.4376 30 1 2.4673 -2.7352 1.0656 31 1 1.5197 -2.2597 2.4954 32 1 0.7429 -2.3282 0.8954 33 1 4.1625 0.8945 4.1148 34 1 3.9847 1.1637 6.6461 35 1 5.0644 -2.1641 8.8770 36 1 4.5397 -2.5876 4.6579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439838769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:49 Heat of formation + Delta-G solvation = -45.840154 kcal Electronic energy + Delta-G solvation = -23325.532251 eV Core-core repulsion = 19532.931812 eV Total energy + Delta-G solvation = -3792.600439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.24584 -41.33862 -40.00308 -38.38361 -36.29888 -35.21803 -32.79510 -32.13588 -30.59266 -30.38785 -26.58461 -25.63426 -25.12226 -24.25779 -23.10116 -21.13389 -19.66899 -18.39557 -17.84349 -17.42600 -17.13931 -16.75677 -16.48074 -16.09940 -15.88129 -15.74637 -15.27406 -14.57963 -14.22949 -14.06999 -13.70271 -13.45617 -13.38155 -13.07652 -12.68775 -12.51253 -12.35255 -12.14511 -11.91108 -11.35303 -11.28541 -10.90287 -10.81664 -10.27523 -10.21620 -9.77303 -9.70697 -9.48495 -9.05016 -8.78623 -8.74330 -8.01792 -6.24454 -4.27154 0.43521 0.71348 1.56427 2.26395 3.15536 3.19492 3.28902 3.29872 3.39892 3.56355 3.80044 4.11064 4.24896 4.33938 4.44757 4.54213 4.67961 5.07117 5.07740 5.43462 5.64036 5.71685 5.81391 6.06210 6.07765 6.16859 6.26640 6.31199 6.44800 6.67572 6.68411 6.89578 7.01849 7.40164 7.43900 7.54003 7.86336 8.21483 8.40225 8.76675 9.34027 10.87960 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.033544 B = 0.003449 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.528534 B = 8115.718923 C = 8532.143381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.227 3.773 3 H 0.067 0.933 4 C -0.533 4.533 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.890 5.890 8 Si 0.883 3.117 9 H -0.275 1.275 10 H -0.263 1.263 11 H -0.292 1.292 12 N -0.543 5.543 13 C 0.070 3.930 14 C 0.497 3.503 15 O -0.532 6.532 16 C 0.512 3.488 17 O -0.493 6.493 18 N -0.647 5.647 19 C 0.131 3.869 20 C 0.070 3.930 21 N -0.437 5.437 22 C 0.052 3.948 23 C 0.072 3.928 24 F -0.126 7.126 25 C -0.118 4.118 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.268 0.732 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.429 0.571 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.503 -0.227 19.596 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.126 3.874 3 H 0.084 0.916 4 C -0.571 4.571 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.713 3.287 9 H -0.202 1.202 10 H -0.188 1.188 11 H -0.219 1.219 12 N -0.273 5.273 13 C -0.072 4.072 14 C 0.278 3.722 15 O -0.411 6.411 16 C 0.296 3.704 17 O -0.366 6.366 18 N -0.295 5.295 19 C 0.033 3.967 20 C -0.090 4.090 21 N -0.144 5.144 22 C -0.107 4.107 23 C 0.050 3.950 24 F -0.104 7.104 25 C -0.147 4.147 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.269 0.731 34 H 0.186 0.814 35 H 0.186 0.814 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.437 -0.021 20.038 20.185 hybrid contribution -0.406 0.255 -1.248 1.337 sum 2.031 0.234 18.790 18.901 Atomic orbital electron populations 1.22486 0.98403 1.01584 0.99626 1.19530 0.90431 0.95234 0.82236 0.91561 1.21079 1.33290 1.14518 0.88192 0.90104 1.24853 0.95580 0.96609 0.95516 1.69862 1.44761 1.40029 0.98049 0.86922 0.80499 0.83659 0.77664 1.20231 1.18773 1.21938 1.47895 1.45535 1.12753 1.21093 1.22225 1.01590 0.80706 1.02699 1.19450 0.81934 0.86712 0.84150 1.90740 1.55767 1.17655 1.76955 1.20984 0.77580 0.86859 0.84953 1.90676 1.52326 1.15436 1.78189 1.43204 1.54837 1.18364 1.13061 1.18637 0.98390 0.92775 0.86850 1.22781 0.99364 1.01172 0.85717 1.67728 1.09437 1.10753 1.26481 1.22873 1.00167 0.89494 0.98127 1.18638 1.01759 0.79648 0.94982 1.91546 1.90140 1.31975 1.96770 1.21861 0.98451 0.95477 0.98871 0.92687 0.92119 0.94575 0.92230 0.92299 0.89275 0.90817 0.73133 0.81371 0.81358 0.81725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.66 37.16 0.32 -3.00 16 2 C 0.23 5.20 2.22 -69.08 -0.15 5.04 16 3 H 0.07 1.64 5.96 -51.93 -0.31 1.33 16 4 C -0.53 -14.26 8.95 -34.44 -0.31 -14.57 16 5 H 0.08 2.36 7.89 -52.48 -0.41 1.94 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 8 Si 0.88 20.86 24.37 -169.99 -4.14 16.72 16 9 H -0.28 -6.23 6.87 56.52 0.39 -5.84 16 10 H -0.26 -6.03 6.53 56.52 0.37 -5.66 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 N -0.54 -10.81 2.75 -175.81 -0.48 -11.29 16 13 C 0.07 1.21 8.75 59.85 0.52 1.74 16 14 C 0.50 9.16 7.73 -11.63 -0.09 9.07 16 15 O -0.53 -10.81 15.82 5.49 0.09 -10.72 16 16 C 0.51 7.63 7.63 -11.63 -0.09 7.54 16 17 O -0.49 -7.69 10.61 5.47 0.06 -7.63 16 18 N -0.65 -7.46 5.34 -10.21 -0.05 -7.52 16 19 C 0.13 1.42 6.32 -83.60 -0.53 0.89 16 20 C 0.07 0.65 11.12 -17.31 -0.19 0.46 16 21 N -0.44 -4.40 10.35 -13.01 -0.13 -4.54 16 22 C 0.05 0.48 11.16 -17.44 -0.19 0.29 16 23 C 0.07 0.75 7.34 -39.31 -0.29 0.47 16 24 F -0.13 -1.37 17.28 2.25 0.04 -1.33 16 25 C -0.12 -1.37 8.80 -39.02 -0.34 -1.71 16 26 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 27 H 0.06 1.16 6.67 -51.93 -0.35 0.81 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.40 5.36 -51.94 -0.28 1.12 16 32 H 0.07 1.24 6.44 -51.93 -0.33 0.91 16 33 H 0.43 4.19 8.30 -40.82 -0.34 3.85 16 34 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.17 2.10 6.31 -52.48 -0.33 1.77 16 LS Contribution 306.04 15.07 4.61 4.61 Total: -1.00 -30.79 306.04 -4.08 -34.87 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.39 Total: 3.90 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -1.44 Total: 8.27 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.10 Total: -48.69 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.14 Total: -18.35 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.14 Total: 16.72 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.79 -4.08 -34.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439838769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.966 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds