Wall clock time and date at job start Fri Apr 10 2020 17:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47009 * 2 1 4 4 C 1.50694 * 109.46729 * 240.00150 * 2 1 3 5 5 H 1.08005 * 120.00179 * 240.00047 * 4 2 1 6 6 C 1.37877 * 120.00582 * 59.99980 * 4 2 1 7 7 N 1.31511 * 120.00439 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99503 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47243 * 269.99785 * 8 6 4 10 10 H 1.48504 * 109.47388 * 30.00164 * 8 6 4 11 11 H 1.48506 * 109.47065 * 149.99996 * 8 6 4 12 12 N 1.46495 * 109.47061 * 119.99953 * 2 1 3 13 13 C 1.46506 * 120.00104 * 59.99761 * 12 2 1 14 14 C 1.34777 * 120.00219 * 239.99840 * 12 2 1 15 15 O 1.21362 * 119.99462 * 356.42551 * 14 12 2 16 16 C 1.49351 * 120.00054 * 176.43079 * 14 12 2 17 17 O 1.21376 * 120.00160 * 5.91967 * 16 14 12 18 18 N 1.34778 * 119.99595 * 185.91866 * 16 14 12 19 19 C 1.39751 * 119.99747 * 175.27430 * 18 16 14 20 20 C 1.38956 * 120.47971 * 214.69138 * 19 18 16 21 21 N 1.31778 * 120.70960 * 179.72980 * 20 19 18 22 22 C 1.31876 * 121.82059 * 0.58425 * 21 20 19 23 23 C 1.38476 * 120.89848 * 359.67757 * 22 21 20 24 24 F 1.35099 * 120.40544 * 180.02562 * 23 22 21 25 25 C 1.38733 * 119.19292 * 0.02562 * 23 22 21 26 26 H 1.08996 * 109.46951 * 59.99627 * 1 2 3 27 27 H 1.08991 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46595 * 299.99811 * 1 2 3 29 29 H 0.97002 * 120.00071 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46629 * 95.97690 * 13 12 2 31 31 H 1.08993 * 109.47273 * 215.98089 * 13 12 2 32 32 H 1.08999 * 109.46814 * 335.98863 * 13 12 2 33 33 H 0.97001 * 120.00257 * 355.27727 * 18 16 14 34 34 H 1.07999 * 119.64837 * 359.97438 * 20 19 18 35 35 H 1.08005 * 119.54753 * 179.70748 * 22 21 20 36 36 H 1.08003 * 120.82946 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 2.1379 -0.8590 -3.5566 8 14 0.6247 1.2790 -2.6541 9 1 -0.8029 0.8726 -2.6997 10 1 0.8470 2.1765 -1.4920 11 1 0.9758 1.9951 -3.9068 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0833 15 8 3.1400 1.1057 1.8596 16 6 3.2252 -0.7144 3.3416 17 8 2.9699 -1.8880 3.5165 18 7 3.8985 -0.0236 4.2829 19 6 4.2162 -0.6301 5.5012 20 6 4.2250 0.1112 6.6765 21 7 4.5188 -0.4573 7.8285 22 6 4.8250 -1.7371 7.9143 23 6 4.8430 -2.5411 6.7869 24 9 5.1576 -3.8512 6.8864 25 6 4.5342 -1.9848 5.5541 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.9039 -0.5274 -4.4376 30 1 2.4673 -2.7352 1.0656 31 1 1.5197 -2.2597 2.4954 32 1 0.7429 -2.3282 0.8954 33 1 4.1625 0.8945 4.1148 34 1 3.9847 1.1637 6.6461 35 1 5.0644 -2.1641 8.8770 36 1 4.5397 -2.5876 4.6579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439838769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:48 Heat of formation + Delta-G solvation = -68.433404 kcal Electronic energy + Delta-G solvation = -23326.511968 eV Core-core repulsion = 19532.931812 eV Total energy + Delta-G solvation = -3793.580156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.06838 -42.44481 -41.08652 -39.68734 -37.76706 -36.42828 -34.72358 -32.98270 -32.34339 -31.28293 -28.01057 -27.26090 -26.66932 -25.16639 -24.15273 -22.48997 -21.04477 -19.52300 -19.05510 -18.76803 -18.21382 -17.99823 -17.85439 -17.22644 -17.15262 -16.84679 -16.66877 -16.00618 -15.42250 -15.12909 -14.96947 -14.84465 -14.54287 -14.32360 -14.13381 -14.01868 -13.68341 -13.54322 -13.40227 -13.09947 -12.66490 -12.38941 -12.19597 -12.07308 -11.55019 -11.41667 -11.09634 -10.82377 -10.66085 -10.32457 -9.71273 -9.55770 -8.36583 -6.43896 -0.42773 -0.12854 0.34747 1.08214 1.29009 1.37629 1.46192 1.96150 2.27136 2.34851 2.49655 2.90232 2.98070 3.13083 3.41519 3.60106 3.69987 3.86139 4.25425 4.31311 4.39924 4.49984 4.59169 4.64468 4.73283 4.82996 4.85896 4.95869 5.06215 5.20542 5.35559 5.47880 5.53327 5.73899 6.08464 6.36134 6.49217 6.59875 6.65085 6.82676 7.22143 8.79491 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.033544 B = 0.003449 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.528534 B = 8115.718923 C = 8532.143381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.229 3.771 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.939 5.939 8 Si 0.944 3.056 9 H -0.254 1.254 10 H -0.251 1.251 11 H -0.296 1.296 12 N -0.556 5.556 13 C 0.077 3.923 14 C 0.494 3.506 15 O -0.553 6.553 16 C 0.522 3.478 17 O -0.503 6.503 18 N -0.627 5.627 19 C 0.117 3.883 20 C 0.087 3.913 21 N -0.448 5.448 22 C 0.067 3.933 23 C 0.062 3.938 24 F -0.131 7.131 25 C -0.128 4.128 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.270 0.730 30 H 0.045 0.955 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.439 0.561 34 H 0.199 0.801 35 H 0.198 0.802 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.576 1.047 22.179 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.127 3.873 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.578 5.578 8 Si 0.770 3.230 9 H -0.179 1.179 10 H -0.175 1.175 11 H -0.223 1.223 12 N -0.286 5.286 13 C -0.065 4.065 14 C 0.276 3.724 15 O -0.433 6.433 16 C 0.305 3.695 17 O -0.377 6.377 18 N -0.276 5.276 19 C 0.020 3.980 20 C -0.073 4.073 21 N -0.155 5.155 22 C -0.092 4.092 23 C 0.040 3.960 24 F -0.109 7.109 25 C -0.157 4.157 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.280 0.720 34 H 0.216 0.784 35 H 0.215 0.785 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.524 1.252 22.680 22.766 hybrid contribution 0.028 -0.203 -1.940 1.951 sum 1.552 1.049 20.740 20.825 Atomic orbital electron populations 1.22360 0.95870 1.02626 1.00650 1.19242 0.92322 0.93877 0.81880 0.93311 1.21287 1.32359 1.13331 0.90253 0.94103 1.25701 0.97067 0.99769 0.95060 1.70007 1.46840 1.42196 0.98734 0.85933 0.79641 0.79787 0.77617 1.17902 1.17541 1.22349 1.47895 1.46333 1.13626 1.20762 1.22270 1.01089 0.79209 1.03941 1.20004 0.80873 0.86518 0.85007 1.90717 1.56177 1.18674 1.77739 1.20164 0.78367 0.86583 0.84370 1.90674 1.53294 1.15591 1.78169 1.42942 1.53556 1.18461 1.12646 1.18685 0.99920 0.92657 0.86758 1.23210 0.97181 1.02227 0.84678 1.67870 1.10069 1.11040 1.26527 1.23323 0.98016 0.89057 0.98758 1.18704 1.02565 0.79677 0.95048 1.91535 1.90284 1.32341 1.96772 1.21847 0.99006 0.95935 0.98902 0.93292 0.91195 0.91736 0.92109 0.93673 0.87232 0.90541 0.72009 0.78446 0.78530 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.07 8.66 71.98 0.62 -5.45 16 2 C 0.23 10.43 2.22 44.25 0.10 10.53 16 3 H 0.05 2.40 5.96 -2.39 -0.01 2.39 16 4 C -0.53 -29.31 8.95 25.60 0.23 -29.08 16 5 H 0.04 2.50 7.89 -2.91 -0.02 2.48 16 6 C 0.02 1.30 5.45 84.66 0.46 1.76 16 7 N -0.94 -56.69 13.96 21.45 0.30 -56.39 16 8 Si 0.94 42.73 24.37 68.60 1.67 44.41 16 9 H -0.25 -10.54 6.87 99.48 0.68 -9.86 16 10 H -0.25 -10.82 6.53 99.48 0.65 -10.17 16 11 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 12 N -0.56 -22.03 2.75 -828.50 -2.28 -24.32 16 13 C 0.08 2.64 8.75 127.77 1.12 3.76 16 14 C 0.49 17.96 7.73 87.24 0.67 18.63 16 15 O -0.55 -22.17 15.82 -3.28 -0.05 -22.22 16 16 C 0.52 15.04 7.63 87.24 0.67 15.71 16 17 O -0.50 -15.30 10.61 -3.33 -0.04 -15.34 16 18 N -0.63 -13.43 5.34 -304.55 -1.63 -15.06 16 19 C 0.12 2.29 6.32 38.29 0.24 2.53 16 20 C 0.09 1.35 11.12 84.87 0.94 2.29 16 21 N -0.45 -7.61 10.35 -195.09 -2.02 -9.63 16 22 C 0.07 1.05 11.16 84.74 0.95 1.99 16 23 C 0.06 1.20 7.34 22.44 0.16 1.37 16 24 F -0.13 -2.71 17.28 44.97 0.78 -1.93 16 25 C -0.13 -2.84 8.80 22.63 0.20 -2.64 16 26 H 0.05 1.94 3.27 -2.39 -0.01 1.94 16 27 H 0.07 2.54 6.67 -2.39 -0.02 2.52 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 29 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 3.33 5.36 -2.48 -0.01 3.31 16 32 H 0.08 2.55 6.44 -2.39 -0.02 2.53 16 33 H 0.44 7.71 8.30 -92.71 -0.77 6.94 16 34 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.15 3.78 6.31 -2.91 -0.02 3.76 16 Total: -1.00 -67.61 306.04 3.41 -64.20 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.31 Total: 14.87 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 6.37 Total: 21.39 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -5.63 Total: -105.39 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.09 Total: -37.55 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.67 Total: 44.41 kcal Total: -67.61 3.41 -64.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439838769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.233 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds