Wall clock time and date at job start Fri Apr 10 2020 17:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47383 * 2 1 4 4 C 1.50702 * 109.47013 * 120.00260 * 2 1 3 5 5 H 1.08003 * 120.00514 * 119.99445 * 4 2 1 6 6 C 1.37881 * 119.99872 * 299.99856 * 4 2 1 7 7 N 1.31519 * 119.99778 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00121 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47158 * 60.00056 * 8 6 4 10 10 H 1.48500 * 109.47163 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47016 * 299.99734 * 8 6 4 12 12 N 1.46503 * 109.47042 * 239.99551 * 2 1 3 13 13 C 1.46505 * 120.00116 * 300.00501 * 12 2 1 14 14 C 1.34780 * 119.99861 * 120.00551 * 12 2 1 15 15 O 1.21361 * 119.99775 * 354.33431 * 14 12 2 16 16 C 1.49350 * 120.00168 * 174.33685 * 14 12 2 17 17 O 1.21373 * 119.99938 * 359.69945 * 16 14 12 18 18 N 1.34777 * 120.00062 * 179.69657 * 16 14 12 19 19 C 1.39747 * 120.00035 * 185.22822 * 18 16 14 20 20 C 1.38959 * 120.48323 * 145.25906 * 19 18 16 21 21 N 1.31765 * 120.71098 * 179.97438 * 20 19 18 22 22 C 1.31877 * 121.82637 * 359.97438 * 21 20 19 23 23 C 1.38475 * 120.89637 * 0.02562 * 22 21 20 24 24 F 1.35100 * 120.40610 * 180.02562 * 23 22 21 25 25 C 1.38734 * 119.19492 * 0.02562 * 23 22 21 26 26 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47051 * 300.00191 * 1 2 3 28 28 H 1.09001 * 109.46714 * 60.00102 * 1 2 3 29 29 H 0.97000 * 119.99949 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.46663 * 264.12400 * 13 12 2 31 31 H 1.08991 * 109.47230 * 24.12574 * 13 12 2 32 32 H 1.08999 * 109.46829 * 144.12926 * 13 12 2 33 33 H 0.96996 * 119.99739 * 5.23183 * 18 16 14 34 34 H 1.08001 * 119.64062 * 359.95811 * 20 19 18 35 35 H 1.08003 * 119.55097 * 180.02562 * 22 21 20 36 36 H 1.07994 * 120.83219 * 180.27496 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4193 5.2205 11 1 1.8279 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0933 -1.4280 14 6 2.7933 -0.0358 -2.0833 15 8 3.0021 1.1518 -1.9460 16 6 3.3950 -0.7715 -3.2354 17 8 3.1906 -1.9603 -3.3696 18 7 4.1649 -0.1153 -4.1259 19 6 4.6380 -0.7772 -5.2621 20 6 4.7749 -0.0991 -6.4672 21 7 5.2210 -0.7186 -7.5412 22 6 5.5538 -1.9945 -7.5201 23 6 5.4455 -2.7385 -6.3573 24 9 5.7898 -4.0449 -6.3468 25 6 4.9791 -2.1261 -5.2031 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7087 1.1613 3.4844 30 1 2.4663 -2.7353 -1.0638 31 1 0.7418 -2.3277 -0.8970 32 1 1.5216 -2.2603 -2.4956 33 1 4.3907 0.8164 -3.9781 34 1 4.5125 0.9471 -6.5242 35 1 5.9159 -2.4655 -8.4221 36 1 4.8883 -2.6802 -4.2805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439838770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:51 Heat of formation + Delta-G solvation = -57.613110 kcal Electronic energy + Delta-G solvation = -23277.146278 eV Core-core repulsion = 19484.035325 eV Total energy + Delta-G solvation = -3793.110953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.21687 -41.25260 -39.90320 -38.23821 -36.13851 -35.08363 -32.87110 -32.09080 -30.38796 -29.60101 -26.47371 -25.45953 -25.19695 -24.18952 -22.98478 -21.00838 -19.61925 -18.34903 -17.74912 -17.36975 -16.99827 -16.50635 -16.33682 -16.04784 -15.73911 -15.66771 -15.02353 -14.51213 -14.21124 -14.00357 -13.60733 -13.46805 -13.27857 -12.71423 -12.63426 -12.47678 -11.99627 -11.66655 -11.25571 -11.16667 -10.92842 -10.88057 -10.84771 -10.35942 -10.27969 -10.17284 -9.68889 -9.33603 -8.97712 -8.72887 -8.54319 -7.87102 -6.18852 -4.27987 0.48488 0.75669 1.65606 2.37688 3.22784 3.25354 3.27897 3.30181 3.51273 3.65688 3.88092 4.15207 4.29811 4.41104 4.52403 4.61202 4.74726 5.12207 5.13006 5.47869 5.69428 5.79790 5.90743 6.14025 6.33386 6.43292 6.59729 6.66117 6.80759 6.89696 7.13147 7.25448 7.44427 7.57510 7.63376 7.86227 7.98918 8.23110 8.44115 8.76574 9.38778 10.86482 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.027843 B = 0.003442 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.382721 B = 8131.908075 C = 8585.693579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.255 3.745 3 H 0.067 0.933 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.549 5.549 13 C 0.080 3.920 14 C 0.495 3.505 15 O -0.533 6.533 16 C 0.510 3.490 17 O -0.496 6.496 18 N -0.648 5.648 19 C 0.132 3.868 20 C 0.070 3.930 21 N -0.437 5.437 22 C 0.051 3.949 23 C 0.071 3.929 24 F -0.126 7.126 25 C -0.119 4.119 26 H 0.034 0.966 27 H 0.098 0.902 28 H 0.014 0.986 29 H 0.266 0.734 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.429 0.571 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 -4.112 -15.868 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.156 3.844 3 H 0.085 0.915 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.279 5.279 13 C -0.063 4.063 14 C 0.275 3.725 15 O -0.412 6.412 16 C 0.294 3.706 17 O -0.369 6.369 18 N -0.296 5.296 19 C 0.035 3.965 20 C -0.091 4.091 21 N -0.144 5.144 22 C -0.108 4.108 23 C 0.049 3.951 24 F -0.105 7.105 25 C -0.147 4.147 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.269 0.731 34 H 0.186 0.814 35 H 0.186 0.814 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.970 -3.790 -16.401 17.861 hybrid contribution 0.389 -0.877 1.804 2.043 sum 6.359 -4.667 -14.598 16.592 Atomic orbital electron populations 1.22115 0.97483 0.99843 1.01226 1.19208 0.91482 0.94545 0.79150 0.91477 1.21238 1.32496 1.13319 0.89965 0.92049 1.24883 0.94760 0.94931 0.99012 1.69860 1.35934 1.22444 1.24165 0.86489 0.79265 0.79629 0.81660 1.20162 1.21064 1.20083 1.48306 1.45075 1.12746 1.21794 1.21989 1.01225 0.81339 1.01727 1.19457 0.82228 0.87270 0.83534 1.90736 1.61367 1.14296 1.74835 1.21138 0.78431 0.87490 0.83535 1.90701 1.57654 1.14801 1.73754 1.43227 1.49275 1.16715 1.20344 1.18657 0.97249 0.92506 0.88132 1.22786 0.99006 1.01312 0.85993 1.67716 1.09090 1.08961 1.28641 1.22858 1.00544 0.90216 0.97161 1.18642 1.01088 0.79776 0.95588 1.91542 1.89587 1.32317 1.97058 1.21864 0.97942 0.95031 0.99905 0.94718 0.88389 0.96665 0.92416 0.92677 0.90855 0.90528 0.73150 0.81353 0.81406 0.81745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.96 37.16 0.33 -3.06 16 2 C 0.26 6.23 2.62 -69.08 -0.18 6.05 16 3 H 0.07 1.85 6.91 -51.93 -0.36 1.50 16 4 C -0.53 -13.88 8.37 -34.44 -0.29 -14.17 16 5 H 0.06 1.59 7.65 -52.48 -0.40 1.19 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.11 11.32 55.43 0.63 -23.48 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.55 -11.43 2.75 -175.81 -0.48 -11.91 16 13 C 0.08 1.43 8.47 59.85 0.51 1.94 16 14 C 0.49 9.59 7.72 -11.63 -0.09 9.50 16 15 O -0.53 -11.40 15.83 5.49 0.09 -11.31 16 16 C 0.51 8.01 7.62 -11.63 -0.09 7.92 16 17 O -0.50 -8.10 10.72 5.48 0.06 -8.04 16 18 N -0.65 -7.95 5.33 -10.20 -0.05 -8.00 16 19 C 0.13 1.51 6.33 -83.60 -0.53 0.98 16 20 C 0.07 0.68 11.12 -17.31 -0.19 0.49 16 21 N -0.44 -4.59 10.35 -13.02 -0.13 -4.73 16 22 C 0.05 0.49 11.17 -17.44 -0.19 0.30 16 23 C 0.07 0.78 7.34 -39.31 -0.29 0.49 16 24 F -0.13 -1.42 17.28 2.25 0.04 -1.38 16 25 C -0.12 -1.44 8.79 -39.02 -0.34 -1.78 16 26 H 0.03 0.74 6.67 -51.93 -0.35 0.39 16 27 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.05 0.98 8.13 -51.93 -0.42 0.55 16 31 H 0.07 1.29 6.44 -51.93 -0.33 0.96 16 32 H 0.08 1.26 5.84 -51.93 -0.30 0.95 16 33 H 0.43 4.53 8.30 -40.82 -0.34 4.19 16 34 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.17 2.19 6.29 -52.49 -0.33 1.86 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -29.15 313.14 -5.17 -34.31 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.55 Total: 4.06 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -1.45 Total: 10.33 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.05 Total: -48.13 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.15 Total: -19.35 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.15 -5.17 -34.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439838770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.298 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds