Wall clock time and date at job start Fri Apr 10 2020 17:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47383 * 2 1 4 4 C 1.50702 * 109.47013 * 120.00260 * 2 1 3 5 5 H 1.08003 * 120.00514 * 119.99445 * 4 2 1 6 6 C 1.37881 * 119.99872 * 299.99856 * 4 2 1 7 7 N 1.31519 * 119.99778 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00121 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47158 * 60.00056 * 8 6 4 10 10 H 1.48500 * 109.47163 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47016 * 299.99734 * 8 6 4 12 12 N 1.46503 * 109.47042 * 239.99551 * 2 1 3 13 13 C 1.46505 * 120.00116 * 300.00501 * 12 2 1 14 14 C 1.34780 * 119.99861 * 120.00551 * 12 2 1 15 15 O 1.21361 * 119.99775 * 354.33431 * 14 12 2 16 16 C 1.49350 * 120.00168 * 174.33685 * 14 12 2 17 17 O 1.21373 * 119.99938 * 359.69945 * 16 14 12 18 18 N 1.34777 * 120.00062 * 179.69657 * 16 14 12 19 19 C 1.39747 * 120.00035 * 185.22822 * 18 16 14 20 20 C 1.38959 * 120.48323 * 145.25906 * 19 18 16 21 21 N 1.31765 * 120.71098 * 179.97438 * 20 19 18 22 22 C 1.31877 * 121.82637 * 359.97438 * 21 20 19 23 23 C 1.38475 * 120.89637 * 0.02562 * 22 21 20 24 24 F 1.35100 * 120.40610 * 180.02562 * 23 22 21 25 25 C 1.38734 * 119.19492 * 0.02562 * 23 22 21 26 26 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47051 * 300.00191 * 1 2 3 28 28 H 1.09001 * 109.46714 * 60.00102 * 1 2 3 29 29 H 0.97000 * 119.99949 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.46663 * 264.12400 * 13 12 2 31 31 H 1.08991 * 109.47230 * 24.12574 * 13 12 2 32 32 H 1.08999 * 109.46829 * 144.12926 * 13 12 2 33 33 H 0.96996 * 119.99739 * 5.23183 * 18 16 14 34 34 H 1.08001 * 119.64062 * 359.95811 * 20 19 18 35 35 H 1.08003 * 119.55097 * 180.02562 * 22 21 20 36 36 H 1.07994 * 120.83219 * 180.27496 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5887 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4193 5.2205 11 1 1.8279 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0933 -1.4280 14 6 2.7933 -0.0358 -2.0833 15 8 3.0021 1.1518 -1.9460 16 6 3.3950 -0.7715 -3.2354 17 8 3.1906 -1.9603 -3.3696 18 7 4.1649 -0.1153 -4.1259 19 6 4.6380 -0.7772 -5.2621 20 6 4.7749 -0.0991 -6.4672 21 7 5.2210 -0.7186 -7.5412 22 6 5.5538 -1.9945 -7.5201 23 6 5.4455 -2.7385 -6.3573 24 9 5.7898 -4.0449 -6.3468 25 6 4.9791 -2.1261 -5.2031 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7087 1.1613 3.4844 30 1 2.4663 -2.7353 -1.0638 31 1 0.7418 -2.3277 -0.8970 32 1 1.5216 -2.2603 -2.4956 33 1 4.3907 0.8164 -3.9781 34 1 4.5125 0.9471 -6.5242 35 1 5.9159 -2.4655 -8.4221 36 1 4.8883 -2.6802 -4.2805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439838770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:51 Heat of formation + Delta-G solvation = -76.931370 kcal Electronic energy + Delta-G solvation = -23277.983981 eV Core-core repulsion = 19484.035325 eV Total energy + Delta-G solvation = -3793.948655 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.06697 -42.39915 -41.03916 -39.61777 -37.65192 -36.38262 -34.73778 -32.97365 -31.53108 -31.21433 -27.94623 -27.34548 -26.57869 -25.13240 -24.09221 -22.45076 -21.04120 -19.48801 -18.95057 -18.47098 -18.20823 -17.87995 -17.81649 -17.18809 -16.98720 -16.83770 -16.57282 -16.03544 -15.33241 -15.09739 -14.96865 -14.55327 -14.47690 -14.30899 -14.04642 -13.55204 -13.48752 -13.33944 -13.01134 -12.75865 -12.72839 -12.41725 -12.22935 -12.19845 -12.10666 -11.25630 -11.09278 -10.66139 -10.55897 -10.29691 -9.67753 -9.51183 -8.18588 -6.35238 -0.41202 -0.12458 0.37112 1.14686 1.43189 1.44006 1.51969 2.01914 2.34565 2.46597 2.51655 2.91815 3.09973 3.18195 3.41592 3.60625 3.70844 3.86675 4.27272 4.40099 4.62796 4.71213 4.71349 4.83014 4.85901 4.87286 4.97974 5.07141 5.35784 5.36807 5.50103 5.59894 5.76591 5.93713 6.07535 6.38724 6.56527 6.64979 6.69858 6.92499 7.35779 8.85714 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.027843 B = 0.003442 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.382721 B = 8131.908075 C = 8585.693579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.260 3.740 3 H 0.026 0.974 4 C -0.546 4.546 5 H 0.059 0.941 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.963 3.037 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.266 1.266 12 N -0.561 5.561 13 C 0.086 3.914 14 C 0.490 3.510 15 O -0.559 6.559 16 C 0.521 3.479 17 O -0.503 6.503 18 N -0.629 5.629 19 C 0.117 3.883 20 C 0.086 3.914 21 N -0.448 5.448 22 C 0.066 3.934 23 C 0.063 3.937 24 F -0.130 7.130 25 C -0.128 4.128 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.267 0.733 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.438 0.562 34 H 0.197 0.803 35 H 0.198 0.802 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -4.932 -17.370 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.159 3.841 3 H 0.044 0.956 4 C -0.584 4.584 5 H 0.077 0.923 6 C -0.178 4.178 7 N -0.551 5.551 8 Si 0.788 3.212 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.191 1.191 12 N -0.291 5.291 13 C -0.056 4.056 14 C 0.272 3.728 15 O -0.439 6.439 16 C 0.304 3.696 17 O -0.378 6.378 18 N -0.278 5.278 19 C 0.020 3.980 20 C -0.075 4.075 21 N -0.155 5.155 22 C -0.092 4.092 23 C 0.041 3.959 24 F -0.109 7.109 25 C -0.157 4.157 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.279 0.721 34 H 0.214 0.786 35 H 0.215 0.785 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.693 -4.618 -17.951 19.706 hybrid contribution 0.235 -0.594 2.152 2.245 sum 6.928 -5.212 -15.798 18.021 Atomic orbital electron populations 1.21923 0.96514 1.00411 1.00599 1.18827 0.92196 0.92670 0.80399 0.95572 1.21483 1.32587 1.13339 0.90982 0.92285 1.25652 0.94885 0.95555 1.01755 1.69984 1.36755 1.23552 1.24766 0.85530 0.78488 0.78915 0.78236 1.20189 1.20689 1.19067 1.48241 1.45794 1.13781 1.21305 1.22060 1.01122 0.79600 1.02811 1.20053 0.81485 0.87144 0.84166 1.90712 1.61930 1.15594 1.75694 1.20235 0.79130 0.87055 0.83167 1.90702 1.58432 1.14754 1.73896 1.42960 1.48041 1.16909 1.19879 1.18708 0.98728 0.92420 0.88162 1.23192 0.97031 1.02318 0.84914 1.67860 1.09685 1.09323 1.28621 1.23328 0.98530 0.89805 0.97558 1.18694 1.01731 0.79796 0.95712 1.91533 1.89691 1.32578 1.97076 1.21849 0.98463 0.95452 0.99907 0.93439 0.90721 0.95499 0.92365 0.92715 0.90797 0.88823 0.72144 0.78605 0.78477 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.29 8.96 71.98 0.64 -5.65 16 2 C 0.26 12.95 2.62 44.25 0.12 13.07 16 3 H 0.03 1.51 6.91 -2.39 -0.02 1.50 16 4 C -0.55 -28.80 8.37 25.60 0.21 -28.59 16 5 H 0.06 3.07 7.65 -2.91 -0.02 3.05 16 6 C 0.02 1.17 5.30 84.65 0.45 1.62 16 7 N -0.91 -50.44 11.32 21.45 0.24 -50.20 16 8 Si 0.96 41.90 29.54 68.60 2.03 43.93 16 9 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 12 N -0.56 -23.51 2.75 -828.49 -2.28 -25.79 16 13 C 0.09 3.02 8.47 127.77 1.08 4.10 16 14 C 0.49 19.08 7.72 87.24 0.67 19.75 16 15 O -0.56 -24.33 15.83 -3.28 -0.05 -24.38 16 16 C 0.52 15.99 7.62 87.24 0.66 16.66 16 17 O -0.50 -15.99 10.72 -3.32 -0.04 -16.02 16 18 N -0.63 -14.64 5.33 -304.55 -1.62 -16.27 16 19 C 0.12 2.44 6.33 38.30 0.24 2.69 16 20 C 0.09 1.44 11.12 84.88 0.94 2.38 16 21 N -0.45 -8.04 10.35 -195.09 -2.02 -10.06 16 22 C 0.07 1.08 11.17 84.74 0.95 2.03 16 23 C 0.06 1.25 7.34 22.45 0.16 1.42 16 24 F -0.13 -2.74 17.28 44.97 0.78 -1.96 16 25 C -0.13 -2.94 8.79 22.63 0.20 -2.74 16 26 H 0.05 2.02 6.67 -2.39 -0.02 2.00 16 27 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 28 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.07 2.55 6.44 -2.39 -0.02 2.53 16 32 H 0.09 2.96 5.84 -2.39 -0.01 2.95 16 33 H 0.44 8.67 8.30 -92.71 -0.77 7.90 16 34 H 0.20 2.12 8.06 -2.91 -0.02 2.09 16 35 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.15 3.90 6.29 -2.91 -0.02 3.88 16 Total: -1.00 -62.77 313.14 3.75 -59.02 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.38 Total: 14.99 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 6.34 Total: 26.74 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -5.68 Total: -102.31 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.09 Total: -40.40 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -62.77 3.75 -59.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439838770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.913 kcal (2) G-P(sol) polarization free energy of solvation -62.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds