Wall clock time and date at job start Fri Apr 10 2020 17:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47142 * 2 1 4 4 H 1.08992 * 109.47129 * 305.00360 * 3 2 1 5 5 C 1.50700 * 109.46872 * 184.99993 * 3 2 1 6 6 H 1.08001 * 120.00014 * 240.00069 * 5 3 2 7 7 C 1.37878 * 120.00048 * 60.00384 * 5 3 2 8 8 N 1.31515 * 119.99959 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00042 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46734 * 60.00014 * 9 7 5 11 11 H 1.48499 * 109.47025 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46839 * 300.00083 * 9 7 5 13 13 N 1.46498 * 109.46671 * 65.00484 * 3 2 1 14 14 C 1.34778 * 119.99899 * 274.99142 * 13 3 2 15 15 O 1.21359 * 119.99744 * 0.02562 * 14 13 3 16 16 C 1.49354 * 120.00152 * 180.02562 * 14 13 3 17 17 O 1.21381 * 120.00148 * 0.02562 * 16 14 13 18 18 N 1.34779 * 120.00167 * 180.02562 * 16 14 13 19 19 C 1.39750 * 119.99960 * 185.27182 * 18 16 14 20 20 C 1.38953 * 120.47970 * 212.78501 * 19 18 16 21 21 N 1.31770 * 120.71148 * 179.97438 * 20 19 18 22 22 C 1.31873 * 121.82530 * 0.02562 * 21 20 19 23 23 C 1.38485 * 120.89454 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.40213 * 180.02562 * 23 22 21 25 25 C 1.38737 * 119.19462 * 0.02562 * 23 22 21 26 26 H 1.08998 * 109.46825 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46639 * 299.99399 * 1 2 3 28 28 H 1.09000 * 109.47158 * 59.99476 * 1 2 3 29 29 H 1.08998 * 109.47302 * 240.00266 * 2 1 3 30 30 H 1.09000 * 109.47158 * 120.00524 * 2 1 3 31 31 H 0.96997 * 119.99733 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00182 * 95.00384 * 13 3 2 33 33 H 0.96997 * 119.99519 * 5.27185 * 18 16 14 34 34 H 1.08008 * 119.64236 * 359.96118 * 20 19 18 35 35 H 1.08000 * 119.55575 * 180.02562 * 22 21 20 36 36 H 1.07994 * 120.83109 * 180.26791 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8812 -1.3818 10 1 6.5975 0.1471 -0.2349 11 1 6.3978 0.2166 -2.6504 12 1 6.4995 2.2814 -1.3821 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6644 1.3671 15 8 -0.3400 2.6320 0.4339 16 6 0.0403 3.3325 2.6431 17 8 0.8158 3.3653 3.5763 18 7 -1.1771 3.8991 2.7585 19 6 -1.5065 4.6190 3.9101 20 6 -2.8121 4.6291 4.3857 21 7 -3.1276 5.3059 5.4713 22 6 -2.2291 5.9960 6.1463 23 6 -0.9071 6.0351 5.7358 24 9 0.0053 6.7448 6.4351 25 6 -0.5310 5.3366 4.5976 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8292 -0.0611 -2.9499 32 1 2.2720 2.1230 1.9978 33 1 -1.8247 3.8071 2.0422 34 1 -3.5765 4.0763 3.8597 35 1 -2.5281 6.5372 7.0318 36 1 0.4935 5.3454 4.2561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439858475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:55 Heat of formation + Delta-G solvation = -77.137896 kcal Electronic energy + Delta-G solvation = -23064.675573 eV Core-core repulsion = 19270.717963 eV Total energy + Delta-G solvation = -3793.957611 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.23465 -41.23868 -39.86984 -38.36481 -35.81634 -35.09958 -32.52308 -32.11262 -31.09215 -30.38862 -27.40008 -25.44042 -24.21361 -23.35410 -22.54073 -20.57793 -19.63988 -19.08176 -18.11026 -17.41773 -17.29916 -16.54744 -16.25350 -16.03538 -15.69640 -15.48338 -15.19399 -14.41563 -14.24837 -14.14141 -13.71575 -13.57460 -13.31169 -12.81604 -12.66234 -12.22418 -11.69434 -11.56204 -11.36934 -11.31343 -11.08632 -10.91727 -10.46455 -10.34519 -10.19641 -9.79016 -9.70839 -9.23706 -9.19735 -8.73159 -8.63725 -8.15258 -6.23919 -4.34241 0.46206 0.72495 1.64711 2.34560 3.20945 3.24201 3.26263 3.28112 3.51220 3.65413 3.90758 4.13460 4.26057 4.40351 4.50979 4.67118 4.95000 5.08183 5.08942 5.45235 5.65404 5.81910 6.23635 6.27751 6.31558 6.46578 6.74649 6.86259 6.98980 7.02921 7.18122 7.36110 7.42840 7.53832 7.63199 7.72385 8.00148 8.30470 8.49969 8.75645 9.32916 10.81370 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.003377 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.902956 B = 8289.820954 C = 9170.494415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.664 5.664 14 C 0.495 3.505 15 O -0.526 6.526 16 C 0.508 3.492 17 O -0.501 6.501 18 N -0.647 5.647 19 C 0.135 3.865 20 C 0.069 3.931 21 N -0.436 5.436 22 C 0.051 3.949 23 C 0.074 3.926 24 F -0.126 7.126 25 C -0.120 4.120 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.052 0.948 29 H 0.104 0.896 30 H 0.035 0.965 31 H 0.267 0.733 32 H 0.402 0.598 33 H 0.430 0.570 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.116 7.830 11.499 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.578 4.578 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.313 5.313 14 C 0.273 3.727 15 O -0.404 6.404 16 C 0.291 3.709 17 O -0.373 6.373 18 N -0.295 5.295 19 C 0.037 3.963 20 C -0.092 4.092 21 N -0.143 5.143 22 C -0.108 4.108 23 C 0.052 3.948 24 F -0.104 7.104 25 C -0.149 4.149 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.237 0.763 33 H 0.269 0.731 34 H 0.187 0.813 35 H 0.187 0.813 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.833 7.678 11.529 17.585 hybrid contribution 2.062 0.051 -0.245 2.078 sum -8.770 7.729 11.285 16.248 Atomic orbital electron populations 1.21859 0.98280 0.98534 1.00975 1.21975 0.92667 0.99316 1.02889 1.19050 0.94866 0.89424 0.79912 0.92626 1.21157 0.90230 1.39755 1.06681 0.91793 1.24868 0.98896 0.94499 0.95194 1.69865 1.35437 1.37207 1.09324 0.86456 0.84396 0.78456 0.77550 1.20021 1.21046 1.20069 1.46501 1.13294 1.52164 1.19354 1.19455 0.84729 0.81706 0.86776 1.90762 1.51131 1.59270 1.39247 1.21226 0.81406 0.78544 0.89678 1.90759 1.50503 1.56377 1.39688 1.43227 1.16938 1.50710 1.18623 1.18639 0.94512 0.93552 0.89584 1.22758 0.93966 0.98891 0.93593 1.67710 1.35134 1.05731 1.05700 1.22859 0.87480 0.99598 1.00874 1.18612 0.88089 0.95430 0.92708 1.91545 1.65848 1.75710 1.77344 1.21717 1.02451 0.95504 0.95219 0.95370 0.94698 0.92878 0.87745 0.94602 0.92304 0.76332 0.73096 0.81340 0.81343 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.51 37.16 0.32 -2.51 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.32 2.24 -69.08 -0.15 6.17 16 4 H 0.06 1.49 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.66 8.73 -34.44 -0.30 -13.96 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.52 11.29 55.43 0.63 -22.89 16 9 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.66 -13.19 5.01 -55.40 -0.28 -13.47 16 14 C 0.50 8.95 6.46 -11.63 -0.08 8.87 16 15 O -0.53 -10.29 13.62 5.49 0.07 -10.22 16 16 C 0.51 7.72 7.65 -11.63 -0.09 7.63 16 17 O -0.50 -8.33 14.16 5.47 0.08 -8.25 16 18 N -0.65 -7.65 5.34 -10.20 -0.05 -7.70 16 19 C 0.14 1.52 6.31 -83.61 -0.53 0.99 16 20 C 0.07 0.66 11.12 -17.31 -0.19 0.47 16 21 N -0.44 -4.53 10.35 -13.01 -0.13 -4.67 16 22 C 0.05 0.49 11.17 -17.44 -0.19 0.29 16 23 C 0.07 0.80 7.34 -39.31 -0.29 0.52 16 24 F -0.13 -1.42 17.28 2.25 0.04 -1.38 16 25 C -0.12 -1.45 8.76 -39.02 -0.34 -1.80 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.03 0.67 5.64 -51.93 -0.29 0.38 16 28 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.40 7.50 8.01 -40.82 -0.33 7.17 16 33 H 0.43 4.25 8.30 -40.82 -0.34 3.91 16 34 H 0.17 1.16 8.06 -52.48 -0.42 0.73 16 35 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.16 2.12 6.47 -52.49 -0.34 1.78 16 LS Contribution 315.18 15.07 4.75 4.75 Total: -1.00 -28.18 315.18 -5.65 -33.83 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -3.64 Total: 9.77 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -2.09 Total: 5.26 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.16 Total: -48.73 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.15 Total: -18.47 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.18 -5.65 -33.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439858475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.306 kcal (2) G-P(sol) polarization free energy of solvation -28.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds