Wall clock time and date at job start Fri Apr 10 2020 17:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47194 * 2 1 4 4 H 1.08993 * 109.47996 * 54.99995 * 3 2 1 5 5 C 1.50701 * 109.47111 * 175.00176 * 3 2 1 6 6 H 1.08004 * 120.00636 * 119.99760 * 5 3 2 7 7 C 1.37879 * 119.99902 * 299.99255 * 5 3 2 8 8 N 1.31524 * 119.99780 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00413 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47085 * 59.99826 * 9 7 5 11 11 H 1.48499 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46667 * 300.00329 * 9 7 5 13 13 N 1.46498 * 109.47248 * 294.99486 * 3 2 1 14 14 C 1.34778 * 119.99899 * 84.99625 * 13 3 2 15 15 O 1.21359 * 119.99744 * 0.02562 * 14 13 3 16 16 C 1.49354 * 120.00152 * 180.02562 * 14 13 3 17 17 O 1.21381 * 120.00148 * 0.02562 * 16 14 13 18 18 N 1.34779 * 120.00167 * 180.02562 * 16 14 13 19 19 C 1.39750 * 119.99960 * 185.27182 * 18 16 14 20 20 C 1.38953 * 120.47970 * 212.78501 * 19 18 16 21 21 N 1.31775 * 120.71440 * 179.97438 * 20 19 18 22 22 C 1.31876 * 121.81893 * 0.02562 * 21 20 19 23 23 C 1.38485 * 120.89801 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.40213 * 180.02562 * 23 22 21 25 25 C 1.38737 * 119.19462 * 0.02562 * 23 22 21 26 26 H 1.09012 * 109.47159 * 300.00717 * 1 2 3 27 27 H 1.08998 * 109.46948 * 59.99757 * 1 2 3 28 28 H 1.08994 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47447 * 239.99259 * 2 1 3 30 30 H 1.09005 * 109.46859 * 119.99574 * 2 1 3 31 31 H 0.96998 * 119.99544 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00182 * 265.00868 * 13 3 2 33 33 H 0.96997 * 119.99519 * 5.27185 * 18 16 14 34 34 H 1.08008 * 119.64236 * 359.96118 * 20 19 18 35 35 H 1.08002 * 119.55298 * 180.02562 * 22 21 20 36 36 H 1.07994 * 120.83109 * 180.26791 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4061 0.3367 2.1730 9 14 6.0049 0.8812 1.3819 10 1 6.4995 2.2814 1.3821 11 1 6.3977 0.2168 2.6506 12 1 6.5974 0.1471 0.2350 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3397 2.6325 -0.4337 16 6 0.0399 3.3315 -2.6435 17 8 0.8149 3.3629 -3.5772 18 7 -1.1772 3.8989 -2.7586 19 6 -1.5894 4.4256 -3.9857 20 6 -2.4230 5.5363 -4.0315 21 7 -2.8141 6.0371 -5.1860 22 6 -2.4365 5.5122 -6.3353 23 6 -1.6062 4.4044 -6.3725 24 9 -1.2251 3.8750 -7.5556 25 6 -1.1706 3.8449 -5.1800 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8292 -0.0616 2.9496 32 1 2.2720 2.1230 -1.9978 33 1 -1.7670 3.9415 -1.9897 34 1 -2.7542 5.9941 -3.1110 35 1 -2.7787 5.9526 -7.2601 36 1 -0.5192 2.9835 -5.1782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439858476.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:57 Heat of formation + Delta-G solvation = -96.807012 kcal Electronic energy + Delta-G solvation = -23075.653613 eV Core-core repulsion = 19280.843086 eV Total energy + Delta-G solvation = -3794.810528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.08429 -42.34277 -41.01013 -39.70774 -37.28660 -36.43046 -34.34267 -32.99979 -32.81941 -31.28770 -29.20106 -26.71889 -25.28033 -24.79185 -23.77334 -21.99287 -21.28269 -20.37205 -19.19731 -18.50962 -18.15805 -17.93118 -17.66554 -17.19330 -16.87881 -16.81584 -16.61097 -15.98027 -15.58599 -15.11966 -14.98519 -14.62955 -14.57642 -14.31956 -13.87577 -13.52275 -13.44429 -13.20607 -13.00937 -12.79225 -12.66955 -12.30581 -12.18833 -12.12143 -11.60965 -11.15268 -11.11228 -10.72422 -10.56820 -10.44074 -9.87000 -9.60598 -8.19383 -6.36368 -0.43085 -0.14798 0.41541 1.15370 1.46438 1.46532 1.54725 2.06778 2.37228 2.49748 2.57991 2.93989 3.10690 3.38852 3.42308 3.59466 3.68655 3.85776 4.25706 4.48361 4.54632 4.66812 4.70724 4.79941 4.87539 5.01278 5.21344 5.33380 5.38063 5.45761 5.55328 5.63844 5.76584 5.86495 6.10852 6.41888 6.63341 6.65462 6.72489 7.06893 7.35512 8.85401 Molecular weight = 295.11amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.003259 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.189298 B = 8590.363165 C = 8963.693725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.018 0.982 5 C -0.556 4.556 6 H 0.068 0.932 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.670 5.670 14 C 0.497 3.503 15 O -0.541 6.541 16 C 0.519 3.481 17 O -0.517 6.517 18 N -0.628 5.628 19 C 0.119 3.881 20 C 0.085 3.915 21 N -0.447 5.447 22 C 0.066 3.934 23 C 0.064 3.936 24 F -0.130 7.130 25 C -0.131 4.131 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.267 0.733 32 H 0.408 0.592 33 H 0.440 0.560 34 H 0.199 0.801 35 H 0.199 0.801 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.311 7.671 -13.209 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.036 0.964 5 C -0.594 4.594 6 H 0.086 0.914 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.319 5.319 14 C 0.277 3.723 15 O -0.420 6.420 16 C 0.302 3.698 17 O -0.391 6.391 18 N -0.276 5.276 19 C 0.022 3.978 20 C -0.075 4.075 21 N -0.154 5.154 22 C -0.093 4.093 23 C 0.042 3.958 24 F -0.109 7.109 25 C -0.160 4.160 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.244 0.756 33 H 0.281 0.719 34 H 0.216 0.784 35 H 0.216 0.784 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.782 8.223 -13.000 19.376 hybrid contribution 1.767 -1.147 0.212 2.117 sum -10.015 7.076 -12.789 17.718 Atomic orbital electron populations 1.21714 0.96449 0.99727 1.00513 1.21830 0.94242 0.98562 1.01700 1.18641 0.94005 0.89590 0.80293 0.96417 1.21501 0.91327 1.39647 1.06911 0.91397 1.25657 1.03048 0.94176 0.94917 1.69999 1.37037 1.37853 1.09761 0.85477 0.79360 0.78442 0.77559 1.19761 1.20911 1.19300 1.46252 1.14289 1.53007 1.18396 1.19858 0.83764 0.80989 0.87733 1.90751 1.51323 1.59762 1.40134 1.20444 0.82158 0.78822 0.88413 1.90767 1.51195 1.56654 1.40508 1.42971 1.16503 1.56006 1.12136 1.18705 0.98893 0.95215 0.85025 1.23199 0.95502 0.90583 0.98260 1.67859 1.21004 1.28707 0.97799 1.23327 0.94892 0.92375 0.98700 1.18679 0.99663 0.96494 0.80966 1.91535 1.89706 1.85689 1.43939 1.21725 1.01597 1.01686 0.90986 0.94394 0.93985 0.93313 0.94225 0.90325 0.92350 0.75621 0.71900 0.78419 0.78436 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.51 71.98 0.61 -4.53 16 2 C -0.12 -5.75 5.45 30.59 0.17 -5.58 16 3 C 0.28 13.35 2.24 44.25 0.10 13.45 16 4 H 0.02 0.99 7.58 -2.39 -0.02 0.98 16 5 C -0.56 -28.48 8.73 25.60 0.22 -28.25 16 6 H 0.07 3.34 7.74 -2.91 -0.02 3.31 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -49.46 11.29 21.45 0.24 -49.22 16 9 Si 0.97 41.02 29.54 68.60 2.03 43.04 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 13 N -0.67 -26.85 5.01 -447.54 -2.24 -29.10 16 14 C 0.50 17.91 6.45 87.24 0.56 18.47 16 15 O -0.54 -21.16 13.62 -3.27 -0.04 -21.21 16 16 C 0.52 15.39 7.65 87.24 0.67 16.06 16 17 O -0.52 -16.95 14.16 -3.34 -0.05 -17.00 16 18 N -0.63 -13.90 5.34 -304.54 -1.63 -15.53 16 19 C 0.12 2.45 6.31 38.29 0.24 2.69 16 20 C 0.08 1.40 11.12 84.87 0.94 2.34 16 21 N -0.45 -7.96 10.35 -195.08 -2.02 -9.98 16 22 C 0.07 1.08 11.17 84.75 0.95 2.02 16 23 C 0.06 1.29 7.34 22.45 0.16 1.45 16 24 F -0.13 -2.75 17.28 44.97 0.78 -1.98 16 25 C -0.13 -3.03 8.76 22.63 0.20 -2.83 16 26 H 0.04 1.63 7.85 -2.38 -0.02 1.61 16 27 H 0.04 1.61 5.64 -2.39 -0.01 1.60 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 4.07 5.95 -2.38 -0.01 4.06 16 31 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 32 H 0.41 15.31 8.01 -92.71 -0.74 14.57 16 33 H 0.44 7.91 8.30 -92.71 -0.77 7.14 16 34 H 0.20 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.14 3.78 6.47 -2.91 -0.02 3.76 16 Total: -1.00 -60.65 315.18 1.99 -58.67 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.35 Total: 25.36 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 5.27 Total: 16.94 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -5.65 Total: -103.82 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.09 Total: -38.21 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -60.65 1.99 -58.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439858476.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.141 kcal (2) G-P(sol) polarization free energy of solvation -60.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds