Wall clock time and date at job start Fri Apr 10 2020 17:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 C 1.53008 * 109.46698 * 180.02562 * 11 9 8 13 13 N 1.46504 * 109.46532 * 180.02562 * 12 11 9 14 14 C 1.34432 * 126.81802 * 125.00271 * 13 12 11 15 15 N 1.30831 * 108.07330 * 179.97438 * 14 13 12 16 16 C 1.33241 * 109.83069 * 0.02562 * 15 14 13 17 17 N 1.30709 * 108.94776 * 359.74876 * 16 15 14 18 18 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 19 19 C 1.36935 * 120.00239 * 275.00034 * 18 2 1 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 2 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 2 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 29 29 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 30 30 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 31 31 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 32 32 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 33 33 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 34 34 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 35 35 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 36 36 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 37 37 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 38 38 H 1.09004 * 109.46904 * 299.99462 * 12 11 9 39 39 H 1.08997 * 109.47241 * 60.00272 * 12 11 9 40 40 H 1.07995 * 125.96761 * 359.97438 * 14 13 12 41 41 H 1.08002 * 125.52961 * 179.97438 * 16 15 14 42 42 H 0.97004 * 119.99747 * 95.00774 * 18 2 1 43 43 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 6 7.3598 -1.1494 1.7512 13 7 7.9490 -1.8712 2.8818 14 6 9.1452 -2.4839 2.9111 15 7 9.3031 -3.0094 4.0988 16 6 8.2335 -2.7548 4.8515 17 7 7.3787 -2.0561 4.1518 18 7 2.0183 -0.6906 1.1962 19 6 2.1490 -0.0075 2.3758 20 1 1.8918 1.0403 2.4244 21 6 2.6122 -0.6617 3.5091 22 7 2.9205 -1.9400 3.4511 23 14 2.7899 0.2699 5.1184 24 1 3.2931 -0.6500 6.1700 25 1 3.7495 1.3891 4.9391 26 1 1.4684 0.8113 5.5254 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1369 32 1 3.7724 -2.2740 -2.6699 33 1 3.6264 -0.6885 -3.4657 34 1 5.1509 -1.1482 -2.6697 35 1 3.6648 -2.0583 0.2386 36 1 5.3354 -1.6299 2.3092 37 1 6.0816 -2.7879 1.1820 38 1 8.0052 -1.2522 0.8789 39 1 7.2584 -0.0945 2.0062 40 1 9.8525 -2.5337 2.0965 41 1 8.0967 -3.0711 5.8750 42 1 2.2490 -1.6318 1.1526 43 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133759334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:23 Heat of formation + Delta-G solvation = 62.737884 kcal Electronic energy + Delta-G solvation = -24842.334760 eV Core-core repulsion = 21346.028769 eV Total energy + Delta-G solvation = -3496.305991 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.80728 -39.54701 -37.08693 -34.74774 -34.22512 -32.56823 -31.06039 -30.94762 -29.74730 -28.28521 -26.46049 -24.80525 -23.50928 -21.77919 -21.74449 -20.78196 -20.41853 -19.61410 -17.52955 -17.32152 -16.24952 -16.03055 -15.44245 -15.19133 -14.86708 -14.59371 -14.13473 -13.94520 -13.62678 -13.51490 -13.27138 -13.18663 -12.83710 -12.25738 -12.18431 -12.06710 -11.81553 -11.75490 -11.61616 -11.16080 -10.92168 -10.76374 -10.52231 -10.47211 -10.17208 -9.96499 -9.82742 -9.62884 -9.52970 -9.31185 -9.18441 -8.98809 -8.52703 -7.03490 -6.09577 -3.11066 1.87812 2.49773 3.11143 3.18383 3.53559 3.56972 3.67214 3.74800 4.46430 4.65998 4.68409 4.93580 5.00514 5.05436 5.24354 5.31473 5.37762 5.46808 5.51886 5.54369 5.60029 5.74855 5.83925 5.87681 5.93280 6.02424 6.12427 6.23020 6.30096 6.40106 6.41170 6.45278 6.48187 6.66766 6.75807 6.93752 6.99877 7.00805 7.80061 7.96300 8.29602 8.67157 8.70649 9.16635 10.02106 10.18103 11.35171 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.006094 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.270576 B = 4593.879071 C = 6440.139002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.048 0.952 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.084 0.916 7 C -0.162 4.162 8 N -0.696 5.696 9 C 0.535 3.465 10 O -0.566 6.566 11 C -0.160 4.160 12 C 0.150 3.850 13 N -0.374 5.374 14 C 0.243 3.757 15 N -0.553 5.553 16 C 0.186 3.814 17 N -0.290 5.290 18 N -0.727 5.727 19 C -0.323 4.323 20 H 0.061 0.939 21 C -0.038 4.038 22 N -0.934 5.934 23 Si 1.071 2.929 24 H -0.283 1.283 25 H -0.297 1.297 26 H -0.299 1.299 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.400 0.600 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.215 0.785 41 H 0.214 0.786 42 H 0.360 0.640 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.961 -1.564 -8.721 10.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.066 3.934 3 H 0.066 0.934 4 C -0.173 4.173 5 C 0.045 3.955 6 H 0.102 0.898 7 C -0.220 4.220 8 N -0.347 5.347 9 C 0.321 3.679 10 O -0.446 6.446 11 C -0.201 4.201 12 C 0.028 3.972 13 N -0.165 5.165 14 C -0.054 4.054 15 N -0.281 5.281 16 C -0.117 4.117 17 N -0.117 5.117 18 N -0.372 5.372 19 C -0.454 4.454 20 H 0.079 0.921 21 C -0.236 4.236 22 N -0.580 5.580 23 Si 0.903 3.097 24 H -0.209 1.209 25 H -0.225 1.225 26 H -0.227 1.227 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.155 0.845 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.231 0.769 41 H 0.231 0.769 42 H 0.194 0.806 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.330 -0.711 -7.145 9.572 hybrid contribution -0.819 -0.390 -1.588 1.829 sum 5.511 -1.101 -8.733 10.385 Atomic orbital electron populations 1.22409 0.99275 1.00626 1.00036 1.20206 0.91660 0.95669 0.85913 0.93354 1.22228 0.94012 1.01529 0.99572 1.20821 0.92524 0.97329 0.84845 0.89797 1.22202 1.01732 1.00810 0.97254 1.45933 1.17741 1.37386 1.33681 1.20095 0.81461 0.83169 0.83131 1.90630 1.62281 1.31436 1.60255 1.21955 0.97205 1.00132 1.00805 1.21503 0.94670 0.96531 0.84490 1.50672 1.14210 1.40635 1.10972 1.25975 0.88781 0.93119 0.97546 1.70490 1.27646 1.27127 1.02859 1.26022 0.87825 0.96727 1.01144 1.78369 1.21536 1.21498 0.90305 1.42458 1.79174 1.09198 1.06356 1.19974 1.41448 0.94962 0.89026 0.92142 1.25535 0.99530 0.97459 1.01059 1.71023 1.51591 1.07852 1.27569 0.83335 0.75566 0.74542 0.76258 1.20875 1.22496 1.22700 0.93769 0.92797 0.94490 0.91898 0.90688 0.92854 0.92033 0.92391 0.76270 0.84536 0.89392 0.87904 0.88518 0.76903 0.76944 0.80576 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.49 37.16 0.35 -2.44 16 2 C 0.18 3.21 2.89 -67.93 -0.20 3.01 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -1.94 4.43 -26.73 -0.12 -2.06 16 5 C 0.15 2.27 2.58 -67.93 -0.17 2.09 16 6 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 7 C -0.16 -2.01 9.48 37.16 0.35 -1.66 16 8 N -0.70 -11.60 3.80 -53.81 -0.20 -11.81 16 9 C 0.54 9.57 7.79 -10.98 -0.09 9.48 16 10 O -0.57 -11.13 15.64 5.56 0.09 -11.04 16 11 C -0.16 -2.71 5.92 -27.88 -0.16 -2.87 16 12 C 0.15 2.22 5.84 -4.04 -0.02 2.20 16 13 N -0.37 -5.79 3.69 -62.62 -0.23 -6.02 16 14 C 0.24 3.16 12.63 -90.65 -1.14 2.02 16 15 N -0.55 -8.37 11.19 -15.83 -0.18 -8.55 16 16 C 0.19 2.94 13.03 -91.82 -1.20 1.74 16 17 N -0.29 -5.36 12.57 29.29 0.37 -4.99 16 18 N -0.73 -16.04 3.84 -53.43 -0.21 -16.24 16 19 C -0.32 -8.41 9.93 -15.06 -0.15 -8.56 16 20 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 21 C -0.04 -1.03 5.50 -17.43 -0.10 -1.13 16 22 N -0.93 -25.85 13.44 55.49 0.75 -25.11 16 23 Si 1.07 25.85 29.92 -169.99 -5.09 20.76 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.30 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 6.79 6.51 -40.82 -0.27 6.52 16 36 H 0.14 2.91 7.88 -51.93 -0.41 2.51 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.10 1.20 8.04 -51.93 -0.42 0.78 16 39 H 0.10 1.57 8.10 -51.93 -0.42 1.15 16 40 H 0.21 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.21 2.65 8.06 -52.49 -0.42 2.23 16 42 H 0.36 7.93 4.54 -40.82 -0.19 7.75 16 43 H 0.25 6.60 6.77 -40.82 -0.28 6.32 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -32.06 359.65 -8.57 -40.63 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -6.65 Total: 15.12 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.65 Total: 1.83 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: 0.30 Total: -72.72 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.09 Total: 20.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.06 -8.57 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133759334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.372 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds