Wall clock time and date at job start Fri Apr 10 2020 17:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47484 * 2 1 4 4 C 1.53000 * 109.47349 * 119.99828 * 2 1 3 5 5 C 1.53000 * 109.47381 * 184.99801 * 4 2 1 6 6 H 1.08998 * 109.47234 * 305.00293 * 5 4 2 7 7 C 1.52998 * 109.47106 * 184.99925 * 5 4 2 8 8 N 1.46506 * 109.46977 * 65.00255 * 5 4 2 9 9 C 1.34777 * 119.99507 * 205.00270 * 8 5 4 10 10 O 1.21282 * 120.00438 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99537 * 179.97438 * 9 8 5 12 12 C 1.52999 * 109.46982 * 179.97438 * 11 9 8 13 13 N 1.46500 * 109.47084 * 179.97438 * 12 11 9 14 14 C 1.34429 * 126.81895 * 124.99739 * 13 12 11 15 15 N 1.30837 * 108.07952 * 180.02562 * 14 13 12 16 16 C 1.33246 * 109.82318 * 359.97438 * 15 14 13 17 17 N 1.30712 * 108.94935 * 0.27015 * 16 15 14 18 18 N 1.46503 * 109.47177 * 239.99903 * 2 1 3 19 19 C 1.36931 * 120.00187 * 85.00193 * 18 2 1 20 20 H 1.08002 * 120.00197 * 359.97438 * 19 18 2 21 21 C 1.38812 * 120.00368 * 180.02562 * 19 18 2 22 22 N 1.31619 * 119.99865 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00345 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46857 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47368 * 119.99532 * 23 21 19 26 26 H 1.48502 * 109.47049 * 239.99592 * 23 21 19 27 27 H 1.09002 * 109.46901 * 300.00660 * 1 2 3 28 28 H 1.08999 * 109.47034 * 60.00142 * 1 2 3 29 29 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46715 * 64.99846 * 4 2 1 31 31 H 1.09000 * 109.47099 * 305.00026 * 4 2 1 32 32 H 1.08998 * 109.47069 * 59.99985 * 7 5 4 33 33 H 1.09001 * 109.47156 * 180.02562 * 7 5 4 34 34 H 1.08998 * 109.47375 * 300.00282 * 7 5 4 35 35 H 0.96992 * 119.99953 * 24.99805 * 8 5 4 36 36 H 1.09002 * 109.47233 * 59.99445 * 11 9 8 37 37 H 1.08996 * 109.47047 * 299.99315 * 11 9 8 38 38 H 1.09002 * 109.47279 * 59.99854 * 12 11 9 39 39 H 1.08995 * 109.47424 * 300.00033 * 12 11 9 40 40 H 1.08000 * 125.96340 * 359.97438 * 14 13 12 41 41 H 1.08002 * 125.52127 * 179.97438 * 16 15 14 42 42 H 0.96999 * 119.99897 * 264.99750 * 18 2 1 43 43 H 0.96992 * 120.00280 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4382 2.4925 8 7 3.9480 0.7894 1.4924 9 6 5.1612 1.2135 1.0866 10 8 5.9360 0.4339 0.5739 11 6 5.5552 2.6565 1.2700 12 6 6.9704 2.8714 0.7297 13 7 7.3531 4.2744 0.9074 14 6 8.4442 4.7377 1.5414 15 7 8.4236 6.0446 1.4827 16 6 7.3401 6.4502 0.8217 17 7 6.6503 5.4026 0.4540 18 7 2.0183 -0.6906 -1.1962 19 6 2.1492 -0.0076 -2.3757 20 1 1.8920 1.0402 -2.4244 21 6 2.6114 -0.6621 -3.5093 22 7 2.9244 -1.9391 -3.4502 23 14 2.7892 0.2696 -5.1186 24 1 2.3743 1.6817 -4.9214 25 1 4.2059 0.2267 -5.5615 26 1 1.9281 -0.3592 -6.1522 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7516 -1.7715 1.2056 31 1 1.6054 -0.2617 2.1370 32 1 3.8001 -2.4818 2.3595 33 1 5.1715 -1.3610 2.5387 34 1 3.6546 -1.0593 3.4193 35 1 3.3285 1.4129 1.9028 36 1 5.5291 2.9084 2.3302 37 1 4.8580 3.2952 0.7276 38 1 6.9968 2.6195 -0.3304 39 1 7.6673 2.2328 1.2723 40 1 9.2046 4.1362 2.0171 41 1 7.0726 7.4781 0.6259 42 1 2.2491 -1.6318 -1.1526 43 1 3.2477 -2.3964 -4.2421 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133759335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:26 Heat of formation + Delta-G solvation = 53.619367 kcal Electronic energy + Delta-G solvation = -23862.755063 eV Core-core repulsion = 20366.053663 eV Total energy + Delta-G solvation = -3496.701400 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19873 -39.73653 -37.01223 -34.99706 -34.43928 -32.23244 -31.39119 -31.27842 -29.95211 -28.60508 -26.36935 -25.17907 -23.61962 -22.14852 -22.01444 -20.99491 -20.21435 -19.73838 -17.86620 -17.22046 -16.57395 -16.17730 -15.72590 -15.41077 -14.95401 -14.74121 -14.29499 -14.02863 -13.80929 -13.75020 -13.43372 -13.00621 -12.71377 -12.66817 -12.23362 -12.13909 -12.04059 -11.76025 -11.62052 -11.42718 -11.06041 -10.84377 -10.62869 -10.45920 -10.22386 -10.21468 -9.99140 -9.91968 -9.89567 -9.63326 -9.60107 -8.88864 -8.78521 -6.92634 -5.73563 -3.01566 1.47052 2.09712 2.79819 2.81270 3.37130 3.45154 3.50944 3.52815 4.14292 4.29195 4.54803 4.62068 4.67907 4.90333 5.00010 5.09923 5.17913 5.37437 5.46212 5.52728 5.60576 5.61666 5.65063 5.85936 5.90040 5.99087 6.06011 6.10493 6.26184 6.26649 6.31091 6.41329 6.54302 6.60509 6.67662 6.77013 6.89492 7.05764 7.68758 7.72783 7.90553 8.41318 8.44922 9.56378 10.13390 10.47548 11.49218 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.011839 B = 0.004209 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.524980 B = 6651.053020 C = 7996.180627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.107 0.893 7 C -0.160 4.160 8 N -0.713 5.713 9 C 0.520 3.480 10 O -0.536 6.536 11 C -0.152 4.152 12 C 0.144 3.856 13 N -0.376 5.376 14 C 0.253 3.747 15 N -0.552 5.552 16 C 0.193 3.807 17 N -0.315 5.315 18 N -0.721 5.721 19 C -0.234 4.234 20 H 0.067 0.933 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.901 3.099 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.034 0.966 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.395 0.605 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.218 0.782 41 H 0.216 0.784 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.450 9.220 15.861 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.039 3.961 6 H 0.124 0.876 7 C -0.219 4.219 8 N -0.364 5.364 9 C 0.305 3.695 10 O -0.412 6.412 11 C -0.193 4.193 12 C 0.022 3.978 13 N -0.166 5.166 14 C -0.044 4.044 15 N -0.279 5.279 16 C -0.109 4.109 17 N -0.143 5.143 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.085 0.915 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.733 3.267 24 H -0.207 1.207 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.229 0.771 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.235 0.765 41 H 0.232 0.768 42 H 0.216 0.784 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.568 8.927 15.068 18.377 hybrid contribution -0.175 0.262 -0.721 0.787 sum 5.393 9.188 14.347 17.870 Atomic orbital electron populations 1.22459 0.99539 1.00810 0.99782 1.20219 0.91575 0.95501 0.86545 0.93680 1.22172 0.93694 1.02270 0.98839 1.21059 0.95176 0.79972 0.99904 0.87553 1.22177 1.01418 1.00278 0.97991 1.45943 1.16282 1.11823 1.62321 1.20104 0.82327 0.89126 0.77988 1.90753 1.51118 1.56548 1.42818 1.21847 0.97832 0.95836 1.03747 1.21605 0.96667 0.74682 1.04829 1.50662 1.17780 1.07460 1.40736 1.26090 0.91650 0.91589 0.95070 1.70544 1.23705 1.09772 1.23914 1.26019 0.89631 0.99632 0.95663 1.78094 1.20497 0.92532 1.23175 1.42404 1.77978 1.10560 1.05287 1.19199 1.36347 0.93696 0.87329 0.91463 1.24685 1.02199 0.95916 0.97918 1.69652 1.51000 1.08617 1.28687 0.86199 0.77328 0.78819 0.84356 1.20671 1.21919 1.21942 0.94733 0.92894 0.93523 0.90594 0.92073 0.91682 0.92566 0.93182 0.77132 0.88739 0.87359 0.87892 0.87121 0.76525 0.76786 0.78358 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.49 37.16 0.35 -2.49 16 2 C 0.17 3.16 2.84 -67.93 -0.19 2.97 16 3 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.91 4.29 -26.73 -0.11 -2.02 16 5 C 0.14 2.17 2.52 -67.93 -0.17 1.99 16 6 H 0.11 2.16 7.06 -51.93 -0.37 1.80 16 7 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 8 N -0.71 -9.41 4.45 -53.80 -0.24 -9.65 16 9 C 0.52 7.42 7.79 -10.98 -0.09 7.33 16 10 O -0.54 -9.88 15.65 5.56 0.09 -9.79 16 11 C -0.15 -1.61 5.91 -27.88 -0.16 -1.78 16 12 C 0.14 1.51 5.84 -4.04 -0.02 1.49 16 13 N -0.38 -4.11 3.69 -62.63 -0.23 -4.34 16 14 C 0.25 2.37 12.63 -90.65 -1.14 1.23 16 15 N -0.55 -6.29 11.19 -15.83 -0.18 -6.47 16 16 C 0.19 2.13 13.03 -91.81 -1.20 0.94 16 17 N -0.32 -4.01 12.56 29.29 0.37 -3.65 16 18 N -0.72 -17.38 4.49 -53.42 -0.24 -17.62 16 19 C -0.23 -6.45 9.93 -15.06 -0.15 -6.60 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 23 Si 0.90 22.86 29.55 -169.99 -5.02 17.84 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.40 4.10 8.60 -40.82 -0.35 3.75 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.10 1.29 8.10 -51.93 -0.42 0.87 16 39 H 0.11 0.92 8.04 -51.93 -0.42 0.50 16 40 H 0.22 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.22 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -35.27 366.05 -8.74 -44.00 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.89 Total: 10.73 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -2.63 Total: 0.96 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: 0.20 Total: -69.25 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.27 -8.74 -44.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133759335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.622 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds