Wall clock time and date at job start Fri Apr 10 2020 17:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47484 * 2 1 4 4 C 1.53000 * 109.47349 * 119.99828 * 2 1 3 5 5 C 1.53000 * 109.47381 * 184.99801 * 4 2 1 6 6 H 1.08998 * 109.47234 * 305.00293 * 5 4 2 7 7 C 1.52998 * 109.47106 * 184.99925 * 5 4 2 8 8 N 1.46506 * 109.46977 * 65.00255 * 5 4 2 9 9 C 1.34777 * 119.99507 * 205.00270 * 8 5 4 10 10 O 1.21282 * 120.00438 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99537 * 179.97438 * 9 8 5 12 12 C 1.52999 * 109.46982 * 179.97438 * 11 9 8 13 13 N 1.46500 * 109.47084 * 179.97438 * 12 11 9 14 14 C 1.34429 * 126.81895 * 124.99739 * 13 12 11 15 15 N 1.30837 * 108.07952 * 180.02562 * 14 13 12 16 16 C 1.33246 * 109.82318 * 359.97438 * 15 14 13 17 17 N 1.30712 * 108.94935 * 0.27015 * 16 15 14 18 18 N 1.46503 * 109.47177 * 239.99903 * 2 1 3 19 19 C 1.36931 * 120.00187 * 85.00193 * 18 2 1 20 20 H 1.08002 * 120.00197 * 359.97438 * 19 18 2 21 21 C 1.38812 * 120.00368 * 180.02562 * 19 18 2 22 22 N 1.31619 * 119.99865 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00345 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46857 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47368 * 119.99532 * 23 21 19 26 26 H 1.48502 * 109.47049 * 239.99592 * 23 21 19 27 27 H 1.09002 * 109.46901 * 300.00660 * 1 2 3 28 28 H 1.08999 * 109.47034 * 60.00142 * 1 2 3 29 29 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46715 * 64.99846 * 4 2 1 31 31 H 1.09000 * 109.47099 * 305.00026 * 4 2 1 32 32 H 1.08998 * 109.47069 * 59.99985 * 7 5 4 33 33 H 1.09001 * 109.47156 * 180.02562 * 7 5 4 34 34 H 1.08998 * 109.47375 * 300.00282 * 7 5 4 35 35 H 0.96992 * 119.99953 * 24.99805 * 8 5 4 36 36 H 1.09002 * 109.47233 * 59.99445 * 11 9 8 37 37 H 1.08996 * 109.47047 * 299.99315 * 11 9 8 38 38 H 1.09002 * 109.47279 * 59.99854 * 12 11 9 39 39 H 1.08995 * 109.47424 * 300.00033 * 12 11 9 40 40 H 1.08000 * 125.96340 * 359.97438 * 14 13 12 41 41 H 1.08002 * 125.52127 * 179.97438 * 16 15 14 42 42 H 0.96999 * 119.99897 * 264.99750 * 18 2 1 43 43 H 0.96992 * 120.00280 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4382 2.4925 8 7 3.9480 0.7894 1.4924 9 6 5.1612 1.2135 1.0866 10 8 5.9360 0.4339 0.5739 11 6 5.5552 2.6565 1.2700 12 6 6.9704 2.8714 0.7297 13 7 7.3531 4.2744 0.9074 14 6 8.4442 4.7377 1.5414 15 7 8.4236 6.0446 1.4827 16 6 7.3401 6.4502 0.8217 17 7 6.6503 5.4026 0.4540 18 7 2.0183 -0.6906 -1.1962 19 6 2.1492 -0.0076 -2.3757 20 1 1.8920 1.0402 -2.4244 21 6 2.6114 -0.6621 -3.5093 22 7 2.9244 -1.9391 -3.4502 23 14 2.7892 0.2696 -5.1186 24 1 2.3743 1.6817 -4.9214 25 1 4.2059 0.2267 -5.5615 26 1 1.9281 -0.3592 -6.1522 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7516 -1.7715 1.2056 31 1 1.6054 -0.2617 2.1370 32 1 3.8001 -2.4818 2.3595 33 1 5.1715 -1.3610 2.5387 34 1 3.6546 -1.0593 3.4193 35 1 3.3285 1.4129 1.9028 36 1 5.5291 2.9084 2.3302 37 1 4.8580 3.2952 0.7276 38 1 6.9968 2.6195 -0.3304 39 1 7.6673 2.2328 1.2723 40 1 9.2046 4.1362 2.0171 41 1 7.0726 7.4781 0.6259 42 1 2.2491 -1.6318 -1.1526 43 1 3.2477 -2.3964 -4.2421 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133759335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:25 Heat of formation + Delta-G solvation = 30.337929 kcal Electronic energy + Delta-G solvation = -23863.764622 eV Core-core repulsion = 20366.053663 eV Total energy + Delta-G solvation = -3497.710959 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.99048 -40.90792 -38.40348 -36.17867 -35.70773 -34.02964 -32.50781 -32.17260 -30.99819 -30.36865 -27.59655 -26.10077 -25.64030 -22.99899 -22.88751 -22.11943 -21.36527 -21.17174 -19.30742 -18.70008 -17.52887 -17.30685 -16.90194 -16.49196 -16.36154 -15.80887 -15.59502 -15.49817 -15.07142 -14.84630 -14.55679 -14.47595 -14.11866 -13.60324 -13.55842 -13.36029 -13.16572 -13.04897 -12.93294 -12.81194 -12.66375 -12.28725 -12.23308 -12.16175 -11.81995 -11.56107 -11.41636 -11.09660 -10.94640 -10.90085 -10.78841 -10.63334 -9.96462 -8.95576 -7.93416 -5.18416 0.70009 1.29965 1.41342 1.42806 1.50990 1.68212 2.01997 2.33821 2.54740 3.41418 3.48174 3.53642 3.65693 3.81305 3.90311 4.01988 4.10895 4.17412 4.22360 4.35982 4.42420 4.56319 4.67670 4.71163 4.77217 4.80240 4.84954 4.95182 5.04666 5.10341 5.24971 5.27415 5.36302 5.43852 5.48854 5.51879 5.62411 5.68153 5.88453 6.30320 6.62383 7.12220 7.34427 7.36177 8.16466 8.35954 9.30544 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.011839 B = 0.004209 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.524980 B = 6651.053020 C = 7996.180627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.043 0.957 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.047 0.953 7 C -0.150 4.150 8 N -0.704 5.704 9 C 0.514 3.486 10 O -0.584 6.584 11 C -0.135 4.135 12 C 0.148 3.852 13 N -0.383 5.383 14 C 0.263 3.737 15 N -0.577 5.577 16 C 0.193 3.807 17 N -0.355 5.355 18 N -0.731 5.731 19 C -0.224 4.224 20 H 0.069 0.931 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.958 3.042 24 H -0.268 1.268 25 H -0.300 1.300 26 H -0.292 1.292 27 H 0.076 0.924 28 H 0.028 0.972 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.412 0.588 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.260 0.740 41 H 0.240 0.760 42 H 0.370 0.630 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.962 10.735 18.396 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.061 0.939 4 C -0.157 4.157 5 C 0.041 3.959 6 H 0.066 0.934 7 C -0.208 4.208 8 N -0.356 5.356 9 C 0.301 3.699 10 O -0.464 6.464 11 C -0.176 4.176 12 C 0.026 3.974 13 N -0.173 5.173 14 C -0.033 4.033 15 N -0.305 5.305 16 C -0.109 4.109 17 N -0.183 5.183 18 N -0.372 5.372 19 C -0.356 4.356 20 H 0.087 0.913 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.789 3.211 24 H -0.193 1.193 25 H -0.228 1.228 26 H -0.220 1.220 27 H 0.095 0.905 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.249 0.751 36 H 0.144 0.856 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.152 0.848 40 H 0.275 0.725 41 H 0.256 0.744 42 H 0.202 0.798 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.020 10.504 17.655 21.147 hybrid contribution -0.031 -0.155 -1.419 1.428 sum 4.989 10.349 16.236 19.889 Atomic orbital electron populations 1.22318 0.97909 1.00821 1.00663 1.20523 0.92522 0.95287 0.86104 0.93894 1.22076 0.93075 1.02132 0.98388 1.20826 0.95399 0.81222 0.98454 0.93444 1.22067 1.00604 1.00088 0.98056 1.45860 1.16362 1.11503 1.61833 1.20729 0.82031 0.90233 0.76909 1.90736 1.52581 1.58168 1.44939 1.21725 0.97614 0.92672 1.05556 1.21541 0.97350 0.75032 1.03495 1.50634 1.18298 1.07071 1.41297 1.26945 0.91384 0.91461 0.93530 1.70594 1.24135 1.10852 1.24878 1.26586 0.89199 1.00485 0.94658 1.78044 1.22089 0.93432 1.24783 1.42609 1.78177 1.10111 1.06271 1.19525 1.33875 0.93753 0.88495 0.91322 1.25380 1.03598 0.96780 1.00997 1.69793 1.53146 1.10036 1.28971 0.85286 0.76529 0.78349 0.80985 1.19297 1.22827 1.21960 0.90519 0.95302 0.93952 0.90738 0.87572 0.91501 0.93907 0.90004 0.75099 0.85581 0.88088 0.90750 0.84784 0.72473 0.74362 0.79824 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.05 9.49 71.98 0.68 -4.36 16 2 C 0.16 5.80 2.84 44.99 0.13 5.93 16 3 H 0.04 1.55 7.56 -2.39 -0.02 1.53 16 4 C -0.12 -3.16 4.29 30.59 0.13 -3.03 16 5 C 0.15 4.30 2.52 44.99 0.11 4.41 16 6 H 0.05 2.01 7.06 -2.39 -0.02 1.99 16 7 C -0.15 -3.55 9.48 71.98 0.68 -2.87 16 8 N -0.70 -17.51 4.45 -442.52 -1.97 -19.48 16 9 C 0.51 14.44 7.79 87.66 0.68 15.12 16 10 O -0.58 -22.15 15.65 -3.03 -0.05 -22.19 16 11 C -0.14 -2.68 5.91 29.85 0.18 -2.51 16 12 C 0.15 2.98 5.84 86.38 0.50 3.49 16 13 N -0.38 -7.85 3.69 -352.06 -1.30 -9.15 16 14 C 0.26 4.35 12.63 180.36 2.28 6.63 16 15 N -0.58 -12.14 11.19 -203.99 -2.28 -14.42 16 16 C 0.19 4.02 13.03 180.76 2.36 6.38 16 17 N -0.36 -8.75 12.56 -61.24 -0.77 -9.52 16 18 N -0.73 -35.77 4.49 -322.94 -1.45 -37.22 16 19 C -0.22 -12.50 9.93 84.03 0.83 -11.66 16 20 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 21 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 22 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 23 Si 0.96 48.01 29.55 68.60 2.03 50.04 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 26 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.41 7.32 8.60 -92.71 -0.80 6.52 16 36 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.07 1.93 8.10 -2.39 -0.02 1.91 16 39 H 0.13 2.03 8.04 -2.39 -0.02 2.01 16 40 H 0.26 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.24 3.22 8.06 -2.91 -0.02 3.20 16 42 H 0.37 19.81 7.80 -92.71 -0.72 19.09 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -80.22 366.05 3.02 -77.20 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.51 Total: 31.62 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 9.04 Total: 13.55 kcal Atomic # 7 Polarization: -142.73 SS G_CDS: -7.49 Total: -150.22 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -80.22 3.02 -77.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133759335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.539 kcal (2) G-P(sol) polarization free energy of solvation -80.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds