Wall clock time and date at job start Fri Apr 10 2020 17:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36597 * 126.57848 * 2 1 4 4 C 1.47533 * 125.76953 * 0.02965 * 3 2 1 5 5 O 1.21592 * 119.99723 * 355.14026 * 4 3 2 6 6 N 1.34768 * 119.99880 * 175.14419 * 4 3 2 7 7 C 1.46504 * 120.00144 * 184.54864 * 6 4 3 8 8 H 1.08996 * 109.46482 * 35.40131 * 7 6 4 9 9 C 1.53005 * 109.47042 * 275.40488 * 7 6 4 10 10 C 1.53001 * 109.47289 * 155.40323 * 7 6 4 11 11 C 1.53001 * 109.46955 * 296.85539 * 10 7 6 12 12 H 1.08992 * 109.47157 * 54.51647 * 11 10 7 13 13 C 1.52997 * 109.46866 * 294.51213 * 11 10 7 14 14 N 1.46503 * 109.46553 * 174.51726 * 11 10 7 15 15 C 1.36940 * 119.99323 * 205.92634 * 14 11 10 16 16 H 1.07998 * 120.00446 * 4.93939 * 15 14 11 17 17 C 1.38817 * 119.99832 * 184.92897 * 15 14 11 18 18 N 1.31608 * 120.00292 * 184.02665 * 17 15 14 19 19 Si 1.86800 * 119.99801 * 4.02866 * 17 15 14 20 20 H 1.48504 * 109.46912 * 92.66240 * 19 17 15 21 21 H 1.48498 * 109.47054 * 212.66289 * 19 17 15 22 22 H 1.48500 * 109.47315 * 332.66449 * 19 17 15 23 23 N 1.34396 * 108.46054 * 180.02562 * 3 2 1 24 24 N 1.28756 * 109.52268 * 359.74275 * 23 3 2 25 25 N 1.34812 * 126.58518 * 180.02562 * 2 1 3 26 26 C 1.46499 * 126.59280 * 359.93007 * 25 2 1 27 27 H 1.08999 * 109.46906 * 269.98357 * 1 2 3 28 28 H 1.08993 * 109.47118 * 29.98846 * 1 2 3 29 29 H 1.09003 * 109.46687 * 149.98615 * 1 2 3 30 30 H 0.97005 * 120.00380 * 4.55053 * 6 4 3 31 31 H 1.09005 * 109.46885 * 59.99679 * 9 7 6 32 32 H 1.09003 * 109.46486 * 179.97438 * 9 7 6 33 33 H 1.08994 * 109.47106 * 299.99745 * 9 7 6 34 34 H 1.09002 * 109.47012 * 56.85437 * 10 7 6 35 35 H 1.08996 * 109.46890 * 176.85447 * 10 7 6 36 36 H 1.09000 * 109.47367 * 299.99987 * 13 11 10 37 37 H 1.09004 * 109.47337 * 60.00718 * 13 11 10 38 38 H 1.09000 * 109.46919 * 180.02562 * 13 11 10 39 39 H 0.96995 * 120.00668 * 25.92908 * 14 11 10 40 40 H 0.97001 * 120.00321 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.47059 * 89.99681 * 26 25 2 42 42 H 1.09003 * 109.47058 * 209.99950 * 26 25 2 43 43 H 1.09001 * 109.47443 * 330.00239 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8736 2.5028 0.0006 5 8 0.6894 2.7639 -0.0880 6 7 2.7775 3.4975 0.0993 7 6 2.3282 4.8883 0.2004 8 1 1.4069 4.9310 0.7813 9 6 2.0734 5.4451 -1.2018 10 6 3.4070 5.7238 0.8927 11 6 3.6060 5.2161 2.3222 12 1 3.8207 4.1477 2.3018 13 6 2.3331 5.4652 3.1337 14 7 4.7270 5.9278 2.9414 15 6 5.4362 5.3389 3.9540 16 1 5.2216 4.3205 4.2424 17 6 6.4312 6.0509 4.6097 18 7 7.1663 5.4609 5.5283 19 14 6.7269 7.8466 4.1883 20 1 5.9330 8.7067 5.1023 21 1 8.1702 8.1601 4.3427 22 1 6.3125 8.1006 2.7851 23 7 3.5983 0.6790 -0.0006 24 7 3.6299 -0.6082 0.0045 25 7 2.3105 -1.0825 -0.0005 26 6 1.8865 -2.4848 0.0003 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8900 -0.5136 29 1 -0.3633 -0.8899 -0.5141 30 1 3.7257 3.2927 0.1035 31 1 1.3049 4.8498 -1.6949 32 1 1.7387 6.4797 -1.1265 33 1 2.9947 5.4022 -1.7827 34 1 4.3436 5.6359 0.3421 35 1 3.0969 6.7684 0.9179 36 1 2.1185 6.5336 3.1541 37 1 1.4991 4.9357 2.6730 38 1 2.4751 5.1039 4.1522 39 1 4.9667 6.8160 2.6341 40 1 7.8613 5.9586 5.9867 41 1 1.7803 -2.8328 -1.0271 42 1 2.6338 -3.0900 0.5136 43 1 0.9300 -2.5749 0.5151 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133993014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:33 Heat of formation + Delta-G solvation = 63.189571 kcal Electronic energy + Delta-G solvation = -24067.264919 eV Core-core repulsion = 20570.978514 eV Total energy + Delta-G solvation = -3496.286405 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.37798 -39.54771 -37.00767 -35.17646 -34.64798 -32.52132 -32.14035 -30.93452 -29.05254 -28.16168 -27.69113 -26.31473 -23.99257 -23.33392 -21.68809 -20.84030 -20.44367 -19.70567 -18.17656 -17.45269 -16.60613 -16.09882 -16.02866 -15.01893 -14.57899 -14.38979 -14.28711 -14.25740 -13.63538 -13.61440 -13.53182 -13.28210 -13.16055 -12.84783 -12.57028 -12.46747 -12.13692 -12.03950 -11.91597 -11.65898 -11.28636 -11.23400 -10.95844 -10.59203 -10.48624 -10.39160 -10.13677 -9.96626 -9.89881 -9.52774 -9.29896 -8.89074 -8.85954 -7.20632 -5.71205 -3.06213 0.96802 1.67070 1.84363 3.20916 3.34380 3.40314 3.44588 3.49266 4.04199 4.11605 4.39589 4.59296 4.60047 4.63974 4.85765 4.89130 5.08152 5.18907 5.23896 5.36970 5.42866 5.55182 5.55827 5.62831 5.70366 5.74096 5.83448 5.91933 6.03647 6.18240 6.19903 6.26138 6.31454 6.49305 6.56220 6.67267 6.91533 7.09159 7.55887 7.89156 8.07587 8.26430 8.48124 9.27864 10.00071 10.20678 11.47369 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.003798 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.772852 B = 7370.015660 C = 8362.714215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.105 4.105 4 C 0.608 3.392 5 O -0.544 6.544 6 N -0.702 5.702 7 C 0.145 3.855 8 H 0.093 0.907 9 C -0.162 4.162 10 C -0.137 4.137 11 C 0.176 3.824 12 H 0.056 0.944 13 C -0.167 4.167 14 N -0.750 5.750 15 C -0.239 4.239 16 H 0.088 0.912 17 C 0.003 3.997 18 N -0.935 5.935 19 Si 0.887 3.113 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.278 1.278 23 N -0.197 5.197 24 N -0.067 5.067 25 N -0.368 5.368 26 C 0.088 3.912 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.410 0.590 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.040 0.960 38 H 0.055 0.945 39 H 0.361 0.639 40 H 0.258 0.742 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.949 -12.437 -15.472 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.017 4.017 3 C -0.244 4.244 4 C 0.393 3.607 5 O -0.421 6.421 6 N -0.353 5.353 7 C 0.041 3.959 8 H 0.111 0.889 9 C -0.220 4.220 10 C -0.176 4.176 11 C 0.067 3.933 12 H 0.074 0.926 13 C -0.227 4.227 14 N -0.393 5.393 15 C -0.369 4.369 16 H 0.106 0.894 17 C -0.193 4.193 18 N -0.583 5.583 19 Si 0.718 3.282 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.205 1.205 23 N -0.070 5.070 24 N -0.046 5.046 25 N -0.153 5.153 26 C -0.054 4.054 27 H 0.110 0.890 28 H 0.132 0.868 29 H 0.092 0.908 30 H 0.246 0.754 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.194 0.806 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.196 -12.828 -15.331 25.110 hybrid contribution -0.078 1.159 -0.080 1.164 sum -15.274 -11.670 -15.411 24.637 Atomic orbital electron populations 1.20726 0.84708 1.05384 1.04668 1.21911 0.96191 0.86385 0.97254 1.21261 0.89040 0.95565 1.18562 1.16665 0.85512 0.82444 0.76101 1.90727 1.16196 1.83613 1.51574 1.45911 1.10427 1.06132 1.72822 1.21085 0.98896 0.79518 0.96418 0.88878 1.22178 1.01935 1.01121 0.96792 1.22248 0.98280 0.99553 0.97536 1.20183 0.87626 0.96422 0.89054 0.92560 1.22461 0.98201 1.00487 1.01522 1.42856 1.35268 1.18557 1.42668 1.19082 1.11688 0.98196 1.07928 0.89373 1.24688 0.98538 0.97682 0.98363 1.69708 1.24071 1.35884 1.28657 0.86503 0.76994 0.86955 0.77725 1.21287 1.21896 1.20459 1.74644 1.18976 1.04090 1.09276 1.82035 0.95786 1.03499 1.23311 1.50296 1.06571 1.07718 1.50755 1.22145 1.02473 0.76198 1.04540 0.89042 0.86788 0.90808 0.75356 0.92187 0.91639 0.92504 0.91029 0.90591 0.93656 0.94069 0.92583 0.80558 0.93161 0.89378 0.87982 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.43 36.01 0.34 -0.38 16 2 C 0.12 1.33 7.02 -81.88 -0.57 0.75 16 3 C -0.10 -1.47 6.99 -83.55 -0.58 -2.06 16 4 C 0.61 8.89 7.77 -12.47 -0.10 8.80 16 5 O -0.54 -8.39 14.35 5.28 0.08 -8.31 16 6 N -0.70 -9.92 4.37 -54.85 -0.24 -10.16 16 7 C 0.15 1.96 2.39 -67.92 -0.16 1.80 16 8 H 0.09 1.34 5.96 -51.93 -0.31 1.03 16 9 C -0.16 -1.87 9.48 37.16 0.35 -1.52 16 10 C -0.14 -2.07 4.42 -26.73 -0.12 -2.19 16 11 C 0.18 3.40 2.91 -67.93 -0.20 3.20 16 12 H 0.06 1.16 7.43 -51.93 -0.39 0.78 16 13 C -0.17 -3.04 9.27 37.16 0.34 -2.70 16 14 N -0.75 -17.86 4.89 -53.43 -0.26 -18.12 16 15 C -0.24 -6.85 10.41 -15.06 -0.16 -7.00 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 17 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 18 N -0.94 -29.87 13.97 55.49 0.78 -29.09 16 19 Si 0.89 22.47 27.95 -169.99 -4.75 17.72 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.28 -6.54 6.23 56.52 0.35 -6.19 16 23 N -0.20 -3.03 12.04 32.85 0.40 -2.64 16 24 N -0.07 -0.94 13.78 60.35 0.83 -0.11 16 25 N -0.37 -3.76 4.03 -63.59 -0.26 -4.02 16 26 C 0.09 0.40 11.18 59.85 0.67 1.07 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.11 1.03 6.34 -51.93 -0.33 0.70 16 29 H 0.07 0.32 7.83 -51.93 -0.41 -0.09 16 30 H 0.41 5.88 8.24 -40.82 -0.34 5.55 16 31 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.66 6.52 -51.93 -0.34 0.32 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.36 8.42 5.57 -40.82 -0.23 8.20 16 40 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 41 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.20 7.77 -51.93 -0.40 -0.20 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -35.58 355.97 -4.91 -40.49 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.57 Total: 9.12 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -0.28 Total: -0.24 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: 1.24 Total: -64.14 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.75 Total: 17.72 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.58 -4.91 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133993014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.684 kcal (2) G-P(sol) polarization free energy of solvation -35.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds