Wall clock time and date at job start Fri Apr 10 2020 17:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36597 * 126.57848 * 2 1 4 4 C 1.47533 * 125.76953 * 0.02965 * 3 2 1 5 5 O 1.21592 * 119.99723 * 355.14026 * 4 3 2 6 6 N 1.34768 * 119.99880 * 175.14419 * 4 3 2 7 7 C 1.46504 * 120.00144 * 184.54864 * 6 4 3 8 8 H 1.08996 * 109.46482 * 35.40131 * 7 6 4 9 9 C 1.53005 * 109.47042 * 275.40488 * 7 6 4 10 10 C 1.53001 * 109.47289 * 155.40323 * 7 6 4 11 11 C 1.53001 * 109.46955 * 296.85539 * 10 7 6 12 12 H 1.08992 * 109.47157 * 54.51647 * 11 10 7 13 13 C 1.52997 * 109.46866 * 294.51213 * 11 10 7 14 14 N 1.46503 * 109.46553 * 174.51726 * 11 10 7 15 15 C 1.36940 * 119.99323 * 205.92634 * 14 11 10 16 16 H 1.07998 * 120.00446 * 4.93939 * 15 14 11 17 17 C 1.38817 * 119.99832 * 184.92897 * 15 14 11 18 18 N 1.31608 * 120.00292 * 184.02665 * 17 15 14 19 19 Si 1.86800 * 119.99801 * 4.02866 * 17 15 14 20 20 H 1.48504 * 109.46912 * 92.66240 * 19 17 15 21 21 H 1.48498 * 109.47054 * 212.66289 * 19 17 15 22 22 H 1.48500 * 109.47315 * 332.66449 * 19 17 15 23 23 N 1.34396 * 108.46054 * 180.02562 * 3 2 1 24 24 N 1.28756 * 109.52268 * 359.74275 * 23 3 2 25 25 N 1.34812 * 126.58518 * 180.02562 * 2 1 3 26 26 C 1.46499 * 126.59280 * 359.93007 * 25 2 1 27 27 H 1.08999 * 109.46906 * 269.98357 * 1 2 3 28 28 H 1.08993 * 109.47118 * 29.98846 * 1 2 3 29 29 H 1.09003 * 109.46687 * 149.98615 * 1 2 3 30 30 H 0.97005 * 120.00380 * 4.55053 * 6 4 3 31 31 H 1.09005 * 109.46885 * 59.99679 * 9 7 6 32 32 H 1.09003 * 109.46486 * 179.97438 * 9 7 6 33 33 H 1.08994 * 109.47106 * 299.99745 * 9 7 6 34 34 H 1.09002 * 109.47012 * 56.85437 * 10 7 6 35 35 H 1.08996 * 109.46890 * 176.85447 * 10 7 6 36 36 H 1.09000 * 109.47367 * 299.99987 * 13 11 10 37 37 H 1.09004 * 109.47337 * 60.00718 * 13 11 10 38 38 H 1.09000 * 109.46919 * 180.02562 * 13 11 10 39 39 H 0.96995 * 120.00668 * 25.92908 * 14 11 10 40 40 H 0.97001 * 120.00321 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.47059 * 89.99681 * 26 25 2 42 42 H 1.09003 * 109.47058 * 209.99950 * 26 25 2 43 43 H 1.09001 * 109.47443 * 330.00239 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8736 2.5028 0.0006 5 8 0.6894 2.7639 -0.0880 6 7 2.7775 3.4975 0.0993 7 6 2.3282 4.8883 0.2004 8 1 1.4069 4.9310 0.7813 9 6 2.0734 5.4451 -1.2018 10 6 3.4070 5.7238 0.8927 11 6 3.6060 5.2161 2.3222 12 1 3.8207 4.1477 2.3018 13 6 2.3331 5.4652 3.1337 14 7 4.7270 5.9278 2.9414 15 6 5.4362 5.3389 3.9540 16 1 5.2216 4.3205 4.2424 17 6 6.4312 6.0509 4.6097 18 7 7.1663 5.4609 5.5283 19 14 6.7269 7.8466 4.1883 20 1 5.9330 8.7067 5.1023 21 1 8.1702 8.1601 4.3427 22 1 6.3125 8.1006 2.7851 23 7 3.5983 0.6790 -0.0006 24 7 3.6299 -0.6082 0.0045 25 7 2.3105 -1.0825 -0.0005 26 6 1.8865 -2.4848 0.0003 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8900 -0.5136 29 1 -0.3633 -0.8899 -0.5141 30 1 3.7257 3.2927 0.1035 31 1 1.3049 4.8498 -1.6949 32 1 1.7387 6.4797 -1.1265 33 1 2.9947 5.4022 -1.7827 34 1 4.3436 5.6359 0.3421 35 1 3.0969 6.7684 0.9179 36 1 2.1185 6.5336 3.1541 37 1 1.4991 4.9357 2.6730 38 1 2.4751 5.1039 4.1522 39 1 4.9667 6.8160 2.6341 40 1 7.8613 5.9586 5.9867 41 1 1.7803 -2.8328 -1.0271 42 1 2.6338 -3.0900 0.5136 43 1 0.9300 -2.5749 0.5151 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133993014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:32 Heat of formation + Delta-G solvation = 35.976169 kcal Electronic energy + Delta-G solvation = -24068.444981 eV Core-core repulsion = 20570.978514 eV Total energy + Delta-G solvation = -3497.466466 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.29578 -40.66974 -38.41787 -36.31406 -35.86944 -34.05514 -33.34287 -32.27411 -30.74439 -28.94821 -28.31869 -27.61339 -25.58398 -24.74933 -22.75292 -21.97689 -21.53937 -21.13964 -19.72023 -18.95842 -17.46605 -17.19628 -16.91070 -16.64461 -16.13784 -15.63692 -15.39079 -15.26205 -15.13513 -14.69346 -14.39547 -14.21769 -14.16943 -13.95092 -13.88714 -13.46621 -13.33054 -13.26947 -12.96653 -12.93719 -12.82528 -12.69836 -12.23862 -12.16893 -12.02869 -11.83700 -11.59714 -11.46145 -11.15762 -11.06153 -10.97108 -10.29758 -9.94282 -9.30163 -8.00312 -5.33590 0.11490 0.60724 1.15247 1.38469 1.43966 1.50874 2.15357 2.27812 2.50717 3.19707 3.30883 3.43023 3.49615 3.63837 3.76134 4.00915 4.14218 4.23765 4.32813 4.42313 4.47510 4.59849 4.61311 4.65340 4.66184 4.69853 4.81803 4.85027 4.93100 4.98154 5.05389 5.07947 5.14465 5.35817 5.40160 5.47712 5.54090 5.63626 5.80011 6.23957 6.44824 6.89266 7.11303 7.15915 7.87248 8.08562 9.21790 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.003798 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.772852 B = 7370.015660 C = 8362.714215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.130 3.870 3 C -0.136 4.136 4 C 0.607 3.393 5 O -0.555 6.555 6 N -0.706 5.706 7 C 0.149 3.851 8 H 0.088 0.912 9 C -0.154 4.154 10 C -0.124 4.124 11 C 0.170 3.830 12 H 0.034 0.966 13 C -0.157 4.157 14 N -0.751 5.751 15 C -0.228 4.228 16 H 0.047 0.953 17 C -0.068 4.068 18 N -0.988 5.988 19 Si 0.962 3.038 20 H -0.282 1.282 21 H -0.298 1.298 22 H -0.245 1.245 23 N -0.229 5.229 24 N -0.100 5.100 25 N -0.354 5.354 26 C 0.072 3.928 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.407 0.593 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.024 0.976 39 H 0.368 0.632 40 H 0.257 0.743 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.091 -11.808 -17.419 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.009 4.009 3 C -0.277 4.277 4 C 0.392 3.608 5 O -0.434 6.434 6 N -0.356 5.356 7 C 0.045 3.955 8 H 0.106 0.894 9 C -0.212 4.212 10 C -0.163 4.163 11 C 0.063 3.937 12 H 0.052 0.948 13 C -0.217 4.217 14 N -0.395 5.395 15 C -0.359 4.359 16 H 0.065 0.935 17 C -0.259 4.259 18 N -0.638 5.638 19 Si 0.789 3.211 20 H -0.209 1.209 21 H -0.225 1.225 22 H -0.169 1.169 23 N -0.102 5.102 24 N -0.080 5.080 25 N -0.140 5.140 26 C -0.067 4.067 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.243 0.757 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.375 -12.229 -17.327 27.417 hybrid contribution 0.485 0.746 0.536 1.039 sum -16.890 -11.483 -16.791 26.440 Atomic orbital electron populations 1.20852 0.81912 1.06617 1.05643 1.22431 0.97588 0.85674 0.95247 1.21463 0.89442 0.96194 1.20591 1.16788 0.85391 0.82845 0.75783 1.90706 1.16412 1.83923 1.52351 1.45990 1.10258 1.06540 1.72762 1.21077 0.97780 0.79039 0.97581 0.89438 1.22102 1.02062 1.01948 0.95061 1.22112 0.99099 1.00760 0.94283 1.20372 0.86600 0.95085 0.91660 0.94769 1.22319 0.98261 1.01543 0.99558 1.42814 1.36073 1.18895 1.41695 1.18983 1.11660 0.96637 1.08590 0.93533 1.25566 0.98591 1.03023 0.98676 1.69907 1.25223 1.38076 1.30641 0.85305 0.76403 0.80156 0.79235 1.20862 1.22461 1.16905 1.74594 1.20185 1.04936 1.10442 1.81907 0.98139 1.03186 1.24722 1.50648 1.05218 1.09482 1.48675 1.22715 1.04072 0.73186 1.06705 0.87935 0.88229 0.86850 0.75737 0.92750 0.89683 0.92005 0.90904 0.88472 0.92228 0.91847 0.95655 0.79800 0.93442 0.87001 0.87441 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.43 71.24 0.67 -0.47 16 2 C 0.13 2.73 7.02 41.72 0.29 3.02 16 3 C -0.14 -3.88 6.99 40.82 0.29 -3.60 16 4 C 0.61 17.78 7.77 86.70 0.67 18.45 16 5 O -0.56 -16.80 14.35 -4.01 -0.06 -16.86 16 6 N -0.71 -19.91 4.37 -445.70 -1.95 -21.86 16 7 C 0.15 3.79 2.39 44.99 0.11 3.90 16 8 H 0.09 2.35 5.96 -2.39 -0.01 2.33 16 9 C -0.15 -3.18 9.48 71.98 0.68 -2.49 16 10 C -0.12 -3.49 4.42 30.60 0.14 -3.36 16 11 C 0.17 6.50 2.91 44.99 0.13 6.64 16 12 H 0.03 1.46 7.43 -2.39 -0.02 1.44 16 13 C -0.16 -5.60 9.27 71.98 0.67 -4.93 16 14 N -0.75 -35.31 4.89 -322.94 -1.58 -36.89 16 15 C -0.23 -13.37 10.41 84.03 0.87 -12.49 16 16 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 17 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 18 N -0.99 -65.13 13.97 21.65 0.30 -64.82 16 19 Si 0.96 46.22 27.95 68.60 1.92 48.13 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 22 H -0.24 -10.29 6.23 99.48 0.62 -9.67 16 23 N -0.23 -7.34 12.04 -49.99 -0.60 -7.94 16 24 N -0.10 -2.87 13.78 37.02 0.51 -2.36 16 25 N -0.35 -6.82 4.03 -355.10 -1.43 -8.26 16 26 C 0.07 0.46 11.18 127.77 1.43 1.89 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.63 6.34 -2.39 -0.02 1.62 16 29 H 0.11 0.50 7.83 -2.39 -0.02 0.49 16 30 H 0.41 12.02 8.24 -92.70 -0.76 11.25 16 31 H 0.05 1.21 8.08 -2.38 -0.02 1.19 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.96 6.52 -2.38 -0.02 1.95 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.37 16.27 5.57 -92.71 -0.52 15.76 16 40 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 41 H 0.11 0.25 8.14 -2.39 -0.02 0.24 16 42 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.13 0.03 7.77 -2.39 -0.02 0.01 16 Total: -1.00 -80.95 355.97 3.19 -77.76 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.34 Total: 30.16 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.42 Total: 2.94 kcal Atomic # 7 Polarization: -137.38 SS G_CDS: -4.75 Total: -142.14 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.06 Total: -16.86 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.92 Total: 48.13 kcal Total: -80.95 3.19 -77.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133993014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.739 kcal (2) G-P(sol) polarization free energy of solvation -80.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds