Wall clock time and date at job start Fri Apr 10 2020 17:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36598 * 126.58124 * 2 1 4 4 C 1.47529 * 125.76787 * 0.03834 * 3 2 1 5 5 O 1.21590 * 120.00030 * 359.71285 * 4 3 2 6 6 N 1.34778 * 119.99919 * 179.71637 * 4 3 2 7 7 C 1.46499 * 119.99771 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47391 * 34.99730 * 7 6 4 9 9 C 1.53002 * 109.46799 * 274.99826 * 7 6 4 10 10 C 1.53000 * 109.46840 * 155.00060 * 7 6 4 11 11 C 1.53005 * 109.46867 * 294.99527 * 10 7 6 12 12 H 1.08994 * 109.47042 * 55.00282 * 11 10 7 13 13 C 1.53003 * 109.46902 * 175.00512 * 11 10 7 14 14 N 1.46501 * 109.47278 * 294.99980 * 11 10 7 15 15 C 1.36940 * 119.99786 * 155.00016 * 14 11 10 16 16 H 1.07997 * 119.99662 * 359.97438 * 15 14 11 17 17 C 1.38810 * 119.99761 * 180.02562 * 15 14 11 18 18 N 1.31617 * 119.99676 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00131 * 0.02562 * 17 15 14 20 20 H 1.48509 * 109.47271 * 90.00155 * 19 17 15 21 21 H 1.48499 * 109.47119 * 209.99857 * 19 17 15 22 22 H 1.48497 * 109.47224 * 330.00092 * 19 17 15 23 23 N 1.34399 * 108.46276 * 179.77142 * 3 2 1 24 24 N 1.28766 * 109.52166 * 0.22886 * 23 3 2 25 25 N 1.34814 * 126.58549 * 180.16567 * 2 1 3 26 26 C 1.46510 * 126.58985 * 359.96387 * 25 2 1 27 27 H 1.09000 * 109.46590 * 90.00001 * 1 2 3 28 28 H 1.09001 * 109.47145 * 209.99808 * 1 2 3 29 29 H 1.08999 * 109.47123 * 330.00268 * 1 2 3 30 30 H 0.96998 * 119.99599 * 359.97438 * 6 4 3 31 31 H 1.09002 * 109.47075 * 299.99543 * 9 7 6 32 32 H 1.08996 * 109.47407 * 60.00500 * 9 7 6 33 33 H 1.09000 * 109.46986 * 180.02562 * 9 7 6 34 34 H 1.08990 * 109.47170 * 54.99738 * 10 7 6 35 35 H 1.09001 * 109.46952 * 174.99815 * 10 7 6 36 36 H 1.08999 * 109.47084 * 59.99744 * 13 11 10 37 37 H 1.08994 * 109.46912 * 180.02562 * 13 11 10 38 38 H 1.09005 * 109.46911 * 299.99843 * 13 11 10 39 39 H 0.97003 * 120.00154 * 335.00823 * 14 11 10 40 40 H 0.97002 * 119.99836 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.47281 * 270.27890 * 26 25 2 42 42 H 1.09000 * 109.46630 * 30.28300 * 26 25 2 43 43 H 1.09001 * 109.46731 * 150.27547 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6860 2.7628 -0.0037 6 7 2.7817 3.4988 0.0065 7 6 2.3374 4.8948 0.0067 8 1 1.4224 4.9849 0.5921 9 6 2.0695 5.3449 -1.4309 10 6 3.4259 5.7762 0.6227 11 6 3.6061 5.4086 2.0969 12 1 3.8107 4.3415 2.1829 13 6 4.7775 6.2012 2.6806 14 7 2.3821 5.7321 2.8341 15 6 2.0845 5.0660 3.9930 16 1 2.7519 4.3019 4.3632 17 6 0.9245 5.3722 4.6912 18 7 0.6383 4.7316 5.8047 19 14 -0.2309 6.6923 4.0496 20 1 -1.2343 6.0751 3.1453 21 1 -0.9255 7.3397 5.1913 22 1 0.5485 7.7115 3.3020 23 7 3.5984 0.6790 0.0051 24 7 3.6300 -0.6083 0.0034 25 7 2.3105 -1.0825 -0.0031 26 6 1.8865 -2.4849 -0.0064 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.7292 3.2913 0.0104 31 1 2.9846 5.2549 -2.0163 32 1 1.2941 4.7170 -1.8697 33 1 1.7394 6.3837 -1.4308 34 1 4.3645 5.6189 0.0916 35 1 3.1340 6.8233 0.5424 36 1 4.5728 7.2683 2.5946 37 1 4.9061 5.9390 3.7307 38 1 5.6882 5.9605 2.1321 39 1 1.7824 6.4181 2.5013 40 1 -0.1725 4.9453 6.2924 41 1 1.7770 -2.8338 1.0203 42 1 0.9316 -2.5744 -0.5244 43 1 2.6353 -3.0896 -0.5179 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133993016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:39 Heat of formation + Delta-G solvation = 62.906991 kcal Electronic energy + Delta-G solvation = -24537.018089 eV Core-core repulsion = 21040.719431 eV Total energy + Delta-G solvation = -3496.298658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.23860 -39.29381 -36.88434 -35.04482 -34.46498 -32.34382 -32.06753 -30.79299 -29.16765 -28.02400 -27.54852 -26.33456 -23.69448 -23.18653 -21.59290 -20.70509 -20.25618 -19.71686 -18.03970 -17.43690 -16.46643 -15.98864 -15.82680 -14.79232 -14.60961 -14.26057 -14.19145 -13.95454 -13.54995 -13.51901 -13.36796 -13.13525 -12.90986 -12.65474 -12.58844 -12.33914 -12.05965 -11.92539 -11.90646 -11.62499 -11.19208 -11.15047 -10.85121 -10.58333 -10.42298 -10.26141 -10.21939 -9.88123 -9.72312 -9.48842 -9.13264 -8.83184 -8.65177 -7.16313 -5.67211 -3.01465 1.10983 1.82599 1.96239 3.40606 3.45217 3.48728 3.53048 3.59082 4.19601 4.22585 4.57193 4.68743 4.71257 4.77883 4.97397 5.07391 5.21286 5.33125 5.35869 5.38851 5.58888 5.60804 5.64137 5.75003 5.84849 5.87585 5.96229 5.97862 6.09998 6.27258 6.31622 6.35525 6.40631 6.52109 6.61139 6.83318 6.92323 7.07713 7.74102 8.02500 8.09490 8.51635 8.52761 9.30993 10.03761 10.23436 11.51636 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.004915 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.829888 B = 5694.932585 C = 6349.516504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.123 3.877 3 C -0.099 4.099 4 C 0.608 3.392 5 O -0.533 6.533 6 N -0.701 5.701 7 C 0.144 3.856 8 H 0.101 0.899 9 C -0.162 4.162 10 C -0.135 4.135 11 C 0.175 3.825 12 H 0.056 0.944 13 C -0.165 4.165 14 N -0.745 5.745 15 C -0.234 4.234 16 H 0.087 0.913 17 C 0.004 3.996 18 N -0.937 5.937 19 Si 0.881 3.119 20 H -0.283 1.283 21 H -0.293 1.293 22 H -0.277 1.277 23 N -0.202 5.202 24 N -0.074 5.074 25 N -0.368 5.368 26 C 0.088 3.912 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.403 0.597 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.359 0.641 40 H 0.257 0.743 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 -10.316 -16.880 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.014 4.014 3 C -0.238 4.238 4 C 0.392 3.608 5 O -0.409 6.409 6 N -0.351 5.351 7 C 0.040 3.960 8 H 0.119 0.881 9 C -0.220 4.220 10 C -0.173 4.173 11 C 0.066 3.934 12 H 0.074 0.926 13 C -0.225 4.225 14 N -0.389 5.389 15 C -0.364 4.364 16 H 0.105 0.895 17 C -0.191 4.191 18 N -0.586 5.586 19 Si 0.712 3.288 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.204 1.204 23 N -0.075 5.075 24 N -0.053 5.053 25 N -0.154 5.154 26 C -0.053 4.053 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.135 0.865 30 H 0.238 0.762 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.192 0.808 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.265 -10.707 -16.679 20.087 hybrid contribution -1.337 0.818 -0.168 1.576 sum 1.928 -9.889 -16.847 19.630 Atomic orbital electron populations 1.20734 0.84644 1.05819 1.04331 1.21930 0.96272 0.86308 0.96913 1.21299 0.88885 0.95699 1.17965 1.16616 0.85688 0.82338 0.76182 1.90763 1.15914 1.83424 1.50818 1.45708 1.09714 1.05728 1.73924 1.21041 0.99780 0.79293 0.95916 0.88105 1.22199 1.01576 1.01446 0.96801 1.22218 0.97989 0.99630 0.97501 1.20216 0.87114 0.97743 0.88347 0.92568 1.22411 0.97999 1.00423 1.01661 1.42778 1.23116 1.45403 1.27553 1.19029 1.04996 1.14763 0.97622 0.89496 1.24626 0.98026 0.99397 0.97085 1.69706 1.26903 1.44473 1.17477 0.86590 0.81787 0.82482 0.77963 1.20947 1.21983 1.20370 1.74558 1.19196 1.04080 1.09653 1.81942 0.96005 1.03549 1.23812 1.50229 1.06507 1.07675 1.50995 1.22131 1.02239 0.76201 1.04719 0.89246 0.90721 0.86538 0.76185 0.92829 0.92350 0.91786 0.91390 0.90659 0.93684 0.92483 0.94293 0.80792 0.93272 0.89283 0.88639 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 9.38 36.01 0.34 -0.67 16 2 C 0.12 1.64 7.02 -81.87 -0.57 1.06 16 3 C -0.10 -1.59 6.99 -83.55 -0.58 -2.17 16 4 C 0.61 10.69 7.78 -12.47 -0.10 10.59 16 5 O -0.53 -10.51 14.38 5.29 0.08 -10.44 16 6 N -0.70 -11.16 4.44 -54.85 -0.24 -11.40 16 7 C 0.14 2.29 2.52 -67.93 -0.17 2.11 16 8 H 0.10 2.00 7.05 -51.93 -0.37 1.63 16 9 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 10 C -0.13 -2.01 4.29 -26.73 -0.11 -2.13 16 11 C 0.18 3.34 2.84 -67.93 -0.19 3.14 16 12 H 0.06 1.15 7.56 -51.93 -0.39 0.76 16 13 C -0.16 -2.91 9.49 37.16 0.35 -2.55 16 14 N -0.75 -17.68 4.30 -53.42 -0.23 -17.91 16 15 C -0.23 -6.72 10.41 -15.06 -0.16 -6.88 16 16 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 17 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 18 N -0.94 -30.16 13.97 55.49 0.78 -29.38 16 19 Si 0.88 22.79 27.74 -169.99 -4.71 18.08 16 20 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 22 H -0.28 -6.70 6.52 56.52 0.37 -6.34 16 23 N -0.20 -3.25 12.04 32.85 0.40 -2.85 16 24 N -0.07 -1.09 13.78 60.35 0.83 -0.25 16 25 N -0.37 -4.30 4.03 -63.58 -0.26 -4.55 16 26 C 0.09 0.52 11.18 59.85 0.67 1.19 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 29 H 0.12 1.57 6.43 -51.93 -0.33 1.24 16 30 H 0.40 5.82 8.29 -40.82 -0.34 5.48 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.36 8.43 5.66 -40.82 -0.23 8.20 16 40 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.32 7.78 -51.93 -0.40 -0.09 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -36.19 358.83 -4.95 -41.14 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.71 Total: 10.22 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.28 Total: 1.94 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: 1.27 Total: -66.35 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.08 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.19 -4.95 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133993016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.044 kcal (2) G-P(sol) polarization free energy of solvation -36.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds