Wall clock time and date at job start Fri Apr 10 2020 17:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36598 * 126.58124 * 2 1 4 4 C 1.47529 * 125.76787 * 0.03834 * 3 2 1 5 5 O 1.21590 * 120.00030 * 359.71285 * 4 3 2 6 6 N 1.34778 * 119.99919 * 179.71637 * 4 3 2 7 7 C 1.46499 * 119.99771 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47391 * 34.99730 * 7 6 4 9 9 C 1.53002 * 109.46799 * 274.99826 * 7 6 4 10 10 C 1.53000 * 109.46840 * 155.00060 * 7 6 4 11 11 C 1.53005 * 109.46867 * 294.99527 * 10 7 6 12 12 H 1.08994 * 109.47042 * 55.00282 * 11 10 7 13 13 C 1.53003 * 109.46902 * 175.00512 * 11 10 7 14 14 N 1.46501 * 109.47278 * 294.99980 * 11 10 7 15 15 C 1.36940 * 119.99786 * 155.00016 * 14 11 10 16 16 H 1.07997 * 119.99662 * 359.97438 * 15 14 11 17 17 C 1.38810 * 119.99761 * 180.02562 * 15 14 11 18 18 N 1.31617 * 119.99676 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00131 * 0.02562 * 17 15 14 20 20 H 1.48509 * 109.47271 * 90.00155 * 19 17 15 21 21 H 1.48499 * 109.47119 * 209.99857 * 19 17 15 22 22 H 1.48497 * 109.47224 * 330.00092 * 19 17 15 23 23 N 1.34399 * 108.46276 * 179.77142 * 3 2 1 24 24 N 1.28766 * 109.52166 * 0.22886 * 23 3 2 25 25 N 1.34814 * 126.58549 * 180.16567 * 2 1 3 26 26 C 1.46510 * 126.58985 * 359.96387 * 25 2 1 27 27 H 1.09000 * 109.46590 * 90.00001 * 1 2 3 28 28 H 1.09001 * 109.47145 * 209.99808 * 1 2 3 29 29 H 1.08999 * 109.47123 * 330.00268 * 1 2 3 30 30 H 0.96998 * 119.99599 * 359.97438 * 6 4 3 31 31 H 1.09002 * 109.47075 * 299.99543 * 9 7 6 32 32 H 1.08996 * 109.47407 * 60.00500 * 9 7 6 33 33 H 1.09000 * 109.46986 * 180.02562 * 9 7 6 34 34 H 1.08990 * 109.47170 * 54.99738 * 10 7 6 35 35 H 1.09001 * 109.46952 * 174.99815 * 10 7 6 36 36 H 1.08999 * 109.47084 * 59.99744 * 13 11 10 37 37 H 1.08994 * 109.46912 * 180.02562 * 13 11 10 38 38 H 1.09005 * 109.46911 * 299.99843 * 13 11 10 39 39 H 0.97003 * 120.00154 * 335.00823 * 14 11 10 40 40 H 0.97002 * 119.99836 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.47281 * 270.27890 * 26 25 2 42 42 H 1.09000 * 109.46630 * 30.28300 * 26 25 2 43 43 H 1.09001 * 109.46731 * 150.27547 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6860 2.7628 -0.0037 6 7 2.7817 3.4988 0.0065 7 6 2.3374 4.8948 0.0067 8 1 1.4224 4.9849 0.5921 9 6 2.0695 5.3449 -1.4309 10 6 3.4259 5.7762 0.6227 11 6 3.6061 5.4086 2.0969 12 1 3.8107 4.3415 2.1829 13 6 4.7775 6.2012 2.6806 14 7 2.3821 5.7321 2.8341 15 6 2.0845 5.0660 3.9930 16 1 2.7519 4.3019 4.3632 17 6 0.9245 5.3722 4.6912 18 7 0.6383 4.7316 5.8047 19 14 -0.2309 6.6923 4.0496 20 1 -1.2343 6.0751 3.1453 21 1 -0.9255 7.3397 5.1913 22 1 0.5485 7.7115 3.3020 23 7 3.5984 0.6790 0.0051 24 7 3.6300 -0.6083 0.0034 25 7 2.3105 -1.0825 -0.0031 26 6 1.8865 -2.4849 -0.0064 27 1 -0.3632 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.7292 3.2913 0.0104 31 1 2.9846 5.2549 -2.0163 32 1 1.2941 4.7170 -1.8697 33 1 1.7394 6.3837 -1.4308 34 1 4.3645 5.6189 0.0916 35 1 3.1340 6.8233 0.5424 36 1 4.5728 7.2683 2.5946 37 1 4.9061 5.9390 3.7307 38 1 5.6882 5.9605 2.1321 39 1 1.7824 6.4181 2.5013 40 1 -0.1725 4.9453 6.2924 41 1 1.7770 -2.8338 1.0203 42 1 0.9316 -2.5744 -0.5244 43 1 2.6353 -3.0896 -0.5179 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133993016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:38 Heat of formation + Delta-G solvation = 34.921096 kcal Electronic energy + Delta-G solvation = -24538.231649 eV Core-core repulsion = 21040.719431 eV Total energy + Delta-G solvation = -3497.512218 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.29614 -40.60794 -38.39514 -36.22244 -35.82978 -34.06410 -33.35183 -32.16027 -30.96452 -28.95709 -28.34104 -27.59322 -25.37209 -24.78106 -22.68967 -21.89691 -21.53742 -21.21941 -19.75180 -18.98113 -17.45769 -17.27695 -16.86799 -16.62544 -15.99253 -15.77562 -15.33823 -15.15749 -15.12659 -14.60050 -14.37662 -14.22255 -14.09280 -13.98700 -13.98014 -13.44825 -13.35257 -13.20981 -12.99782 -12.95598 -12.81971 -12.62733 -12.27946 -12.21381 -11.99474 -11.86803 -11.67649 -11.43185 -11.15094 -11.05521 -10.94542 -10.29534 -9.89960 -9.25815 -7.99413 -5.30143 0.09480 0.61707 1.12450 1.36066 1.42301 1.46961 2.17754 2.33178 2.50603 3.18587 3.33316 3.44854 3.62199 3.66407 3.73496 3.87390 4.09965 4.31826 4.36662 4.42110 4.53460 4.58244 4.62750 4.66165 4.68254 4.78241 4.79776 4.85458 4.90048 5.00783 5.07023 5.08205 5.23569 5.34595 5.39593 5.49630 5.59390 5.63408 5.80997 6.25099 6.49812 6.89371 7.12803 7.24052 7.90388 8.08667 9.23096 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.004915 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.829888 B = 5694.932585 C = 6349.516504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.127 3.873 3 C -0.132 4.132 4 C 0.600 3.400 5 O -0.565 6.565 6 N -0.696 5.696 7 C 0.142 3.858 8 H 0.058 0.942 9 C -0.151 4.151 10 C -0.122 4.122 11 C 0.166 3.834 12 H 0.035 0.965 13 C -0.157 4.157 14 N -0.746 5.746 15 C -0.216 4.216 16 H 0.047 0.953 17 C -0.067 4.067 18 N -0.989 5.989 19 Si 0.951 3.049 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.246 1.246 23 N -0.221 5.221 24 N -0.093 5.093 25 N -0.353 5.353 26 C 0.072 3.928 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.410 0.590 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.364 0.636 40 H 0.255 0.745 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 -9.970 -19.443 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.013 4.013 3 C -0.272 4.272 4 C 0.385 3.615 5 O -0.443 6.443 6 N -0.346 5.346 7 C 0.037 3.963 8 H 0.076 0.924 9 C -0.209 4.209 10 C -0.160 4.160 11 C 0.059 3.941 12 H 0.053 0.947 13 C -0.216 4.216 14 N -0.390 5.390 15 C -0.347 4.347 16 H 0.065 0.935 17 C -0.258 4.258 18 N -0.640 5.640 19 Si 0.779 3.221 20 H -0.212 1.212 21 H -0.224 1.224 22 H -0.170 1.170 23 N -0.093 5.093 24 N -0.072 5.072 25 N -0.139 5.139 26 C -0.066 4.066 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.102 0.898 30 H 0.246 0.754 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.197 0.803 40 H 0.063 0.937 41 H 0.121 0.879 42 H 0.147 0.853 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.612 -10.367 -19.293 22.198 hybrid contribution -1.343 0.518 0.632 1.572 sum 2.269 -9.849 -18.662 21.223 Atomic orbital electron populations 1.20788 0.82664 1.05854 1.05750 1.22314 0.97398 0.86056 0.95506 1.21349 0.89729 0.95778 1.20361 1.16933 0.85519 0.83324 0.75760 1.90733 1.17036 1.84078 1.52472 1.45734 1.09903 1.05748 1.73240 1.21034 0.98377 0.79503 0.97343 0.92370 1.22099 1.02285 1.01909 0.94652 1.22147 0.99492 1.00187 0.94153 1.20475 0.85820 0.96951 0.90867 0.94731 1.22275 0.98749 1.00601 0.99988 1.42770 1.24911 1.45003 1.26340 1.18935 1.03733 1.13323 0.98704 0.93493 1.25439 1.00188 1.02517 0.97626 1.69894 1.27711 1.46962 1.19459 0.85456 0.79343 0.80056 0.77255 1.21244 1.22365 1.17004 1.74504 1.19527 1.04834 1.10483 1.81816 0.97894 1.03133 1.24400 1.50572 1.05162 1.09285 1.48923 1.22722 1.04339 0.73142 1.06442 0.87008 0.87197 0.89837 0.75393 0.90502 0.93828 0.90133 0.87644 0.88867 0.92614 0.95701 0.90611 0.80307 0.93653 0.87853 0.85347 0.86563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 9.38 71.24 0.67 -1.15 16 2 C 0.13 3.29 7.02 41.72 0.29 3.58 16 3 C -0.13 -4.33 6.99 40.82 0.29 -4.04 16 4 C 0.60 21.74 7.78 86.69 0.67 22.41 16 5 O -0.56 -23.15 14.38 -4.00 -0.06 -23.21 16 6 N -0.70 -22.24 4.44 -445.70 -1.98 -24.22 16 7 C 0.14 4.35 2.52 44.99 0.11 4.46 16 8 H 0.06 2.32 7.05 -2.39 -0.02 2.30 16 9 C -0.15 -3.63 9.48 71.98 0.68 -2.95 16 10 C -0.12 -3.29 4.29 30.60 0.13 -3.16 16 11 C 0.17 6.20 2.84 44.99 0.13 6.32 16 12 H 0.03 1.44 7.56 -2.39 -0.02 1.42 16 13 C -0.16 -5.23 9.49 71.98 0.68 -4.54 16 14 N -0.75 -35.34 4.30 -322.93 -1.39 -36.73 16 15 C -0.22 -12.78 10.41 84.03 0.87 -11.90 16 16 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 17 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 18 N -0.99 -66.08 13.97 21.65 0.30 -65.78 16 19 Si 0.95 47.74 27.74 68.60 1.90 49.64 16 20 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 21 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 22 H -0.25 -10.91 6.52 99.48 0.65 -10.27 16 23 N -0.22 -7.21 12.04 -49.99 -0.60 -7.81 16 24 N -0.09 -2.71 13.78 37.02 0.51 -2.20 16 25 N -0.35 -7.76 4.03 -355.08 -1.43 -9.19 16 26 C 0.07 0.64 11.18 127.77 1.43 2.07 16 27 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.11 1.34 7.84 -2.39 -0.02 1.32 16 29 H 0.08 2.31 6.43 -2.39 -0.02 2.29 16 30 H 0.41 11.75 8.29 -92.71 -0.77 10.98 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.36 16.57 5.66 -92.71 -0.52 16.04 16 40 H 0.25 16.25 8.31 -92.71 -0.77 15.48 16 41 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.13 0.34 7.78 -2.39 -0.02 0.32 16 43 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -84.11 358.83 3.36 -80.75 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: -0.33 Total: 31.30 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 6.43 Total: 7.44 kcal Atomic # 7 Polarization: -141.34 SS G_CDS: -4.59 Total: -145.93 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.06 Total: -23.21 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.90 Total: 49.64 kcal Total: -84.11 3.36 -80.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133993016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.673 kcal (2) G-P(sol) polarization free energy of solvation -84.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds