Wall clock time and date at job start Fri Apr 10 2020 17:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.53003 * 109.46744 * 240.00554 * 2 1 3 5 5 C 1.53004 * 109.46807 * 174.99976 * 4 2 1 6 6 H 1.08995 * 109.47216 * 304.99653 * 5 4 2 7 7 C 1.52999 * 109.47083 * 184.99648 * 5 4 2 8 8 N 1.46498 * 109.47065 * 64.99542 * 5 4 2 9 9 C 1.36943 * 119.99752 * 204.72207 * 8 5 4 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 5 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 5 12 12 N 1.31611 * 120.00081 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47483 * 90.00178 * 13 11 9 15 15 H 1.48498 * 109.47011 * 210.00042 * 13 11 9 16 16 H 1.48502 * 109.47495 * 329.99664 * 13 11 9 17 17 N 1.46494 * 109.47520 * 120.00284 * 2 1 3 18 18 C 1.34778 * 119.99979 * 275.00457 * 17 2 1 19 19 O 1.21284 * 119.99772 * 359.97438 * 18 17 2 20 20 C 1.50698 * 120.00047 * 179.97438 * 18 17 2 21 21 C 1.53005 * 109.47290 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.47290 * 179.97438 * 21 20 18 23 23 N 1.33232 * 125.52616 * 269.69587 * 22 21 20 24 24 C 1.30837 * 109.83166 * 179.85427 * 23 22 21 25 25 N 1.34435 * 108.07165 * 0.40229 * 24 23 22 26 26 H 0.97001 * 126.81866 * 179.78993 * 25 24 23 27 27 N 1.30720 * 125.52359 * 89.99883 * 22 21 20 28 28 H 1.09004 * 109.46882 * 299.99772 * 1 2 3 29 29 H 1.09000 * 109.47436 * 59.99995 * 1 2 3 30 30 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47316 * 55.00068 * 4 2 1 32 32 H 1.08998 * 109.46869 * 294.99537 * 4 2 1 33 33 H 1.08996 * 109.47245 * 179.97438 * 7 5 4 34 34 H 1.08995 * 109.47098 * 300.00077 * 7 5 4 35 35 H 1.09003 * 109.47054 * 59.99725 * 7 5 4 36 36 H 0.97001 * 120.00384 * 25.00562 * 8 5 4 37 37 H 0.97008 * 120.00329 * 179.97438 * 12 11 9 38 38 H 0.96999 * 120.00303 * 94.99255 * 17 2 1 39 39 H 1.08998 * 109.47094 * 299.99834 * 20 18 17 40 40 H 1.09004 * 109.47264 * 59.99904 * 20 18 17 41 41 H 1.09007 * 109.46725 * 300.00029 * 21 20 18 42 42 H 1.09002 * 109.46815 * 59.99486 * 21 20 18 43 43 H 1.07996 * 125.96574 * 180.11754 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4358 -1.2679 7 6 4.0644 -1.2249 -2.6242 8 7 4.1536 -1.3341 -0.1826 9 6 5.3967 -0.9892 0.2768 10 1 5.9411 -0.1828 -0.1920 11 6 5.9572 -1.6760 1.3450 12 7 7.1517 -1.3442 1.7868 13 14 5.0159 -3.0713 2.1554 14 1 5.3486 -4.3511 1.4796 15 1 5.3933 -3.1559 3.5891 16 1 3.5573 -2.8161 2.0418 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0183 2.3571 19 8 1.8590 1.1585 2.4115 20 6 2.6490 -0.7289 3.5876 21 6 2.7011 0.2543 4.7588 22 6 3.2024 -0.4564 5.9894 23 7 2.4407 -1.0774 6.8890 24 6 3.1926 -1.5906 7.8288 25 7 4.4732 -1.2940 7.5468 26 1 5.2547 -1.5396 8.0662 27 7 4.4546 -0.5587 6.3504 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -0.2616 -2.1370 32 1 1.7516 -1.7714 -1.2057 33 1 5.1507 -1.1476 -2.6703 34 1 3.7722 -2.2739 -2.6701 35 1 3.6263 -0.6885 -3.4659 36 1 3.6648 -2.0584 0.2384 37 1 7.5432 -1.8240 2.5336 38 1 2.2491 -1.6318 1.1525 39 1 1.9761 -1.5507 3.8324 40 1 3.6482 -1.1214 3.3985 41 1 3.3743 1.0759 4.5136 42 1 1.7021 0.6472 4.9480 43 1 2.8449 -2.1504 8.6844 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134044381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:47 Heat of formation + Delta-G solvation = 31.555974 kcal Electronic energy + Delta-G solvation = -24834.544998 eV Core-core repulsion = 21336.886857 eV Total energy + Delta-G solvation = -3497.658140 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.11975 -40.92138 -38.51923 -35.98227 -35.25007 -34.12761 -33.09611 -32.49236 -31.49207 -30.60667 -27.60625 -26.48372 -25.31429 -23.70772 -22.50807 -21.97683 -21.26340 -20.94340 -19.57182 -19.31181 -18.08205 -17.42263 -16.76705 -16.59919 -16.38670 -16.05868 -15.94881 -15.19034 -15.04524 -14.69307 -14.34208 -14.28898 -14.05331 -13.81680 -13.49333 -13.39232 -13.15644 -13.12760 -12.87983 -12.77515 -12.49029 -12.38484 -12.19592 -12.02668 -11.79809 -11.60512 -11.44048 -11.16163 -11.11006 -10.99579 -10.88744 -10.65322 -9.93181 -9.19260 -7.97817 -5.28009 0.62489 1.18449 1.33630 1.41948 1.70919 1.77536 1.81769 2.38183 2.47396 3.16182 3.34941 3.59995 3.65873 3.79563 3.84893 4.02803 4.14055 4.15256 4.26036 4.36671 4.47719 4.57315 4.68167 4.82770 4.84114 4.87457 4.88361 4.93569 5.06818 5.10117 5.17276 5.21698 5.29730 5.38678 5.40728 5.61110 5.72602 5.83720 6.23876 6.24612 6.60640 7.04999 7.13071 7.32557 7.88668 8.08187 9.24498 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.005910 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.285648 B = 4736.530524 C = 6106.443384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 H 0.059 0.941 4 C -0.122 4.122 5 C 0.165 3.835 6 H 0.031 0.969 7 C -0.156 4.156 8 N -0.739 5.739 9 C -0.211 4.211 10 H 0.047 0.953 11 C -0.062 4.062 12 N -0.985 5.985 13 Si 0.947 3.053 14 H -0.289 1.289 15 H -0.311 1.311 16 H -0.234 1.234 17 N -0.701 5.701 18 C 0.526 3.474 19 O -0.580 6.580 20 C -0.132 4.132 21 C -0.002 4.002 22 C 0.218 3.782 23 N -0.569 5.569 24 C 0.277 3.723 25 N -0.479 5.479 26 H 0.457 0.543 27 N -0.354 5.354 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.024 0.976 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.362 0.638 37 H 0.251 0.749 38 H 0.399 0.601 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 -4.555 5.630 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 H 0.077 0.923 4 C -0.160 4.160 5 C 0.058 3.942 6 H 0.050 0.950 7 C -0.216 4.216 8 N -0.384 5.384 9 C -0.342 4.342 10 H 0.065 0.935 11 C -0.253 4.253 12 N -0.636 5.636 13 Si 0.777 3.223 14 H -0.216 1.216 15 H -0.239 1.239 16 H -0.158 1.158 17 N -0.354 5.354 18 C 0.313 3.687 19 O -0.461 6.461 20 C -0.174 4.174 21 C -0.043 4.043 22 C -0.064 4.064 23 N -0.299 5.299 24 C -0.021 4.021 25 N -0.198 5.198 26 H 0.305 0.695 27 N -0.184 5.184 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.196 0.804 37 H 0.060 0.940 38 H 0.237 0.763 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.126 0.874 43 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -15.009 -3.303 5.204 16.226 hybrid contribution 1.334 -1.367 1.288 2.303 sum -13.675 -4.670 6.492 15.842 Atomic orbital electron populations 1.22096 0.93395 1.02887 1.02511 1.21035 0.94683 0.96491 0.84091 0.92277 1.22177 0.94084 1.02073 0.97653 1.20505 0.92408 0.94500 0.86837 0.95034 1.22263 1.00023 1.01251 0.98013 1.42758 1.17377 1.40723 1.37568 1.18907 0.92762 1.12283 1.10283 0.93493 1.25359 0.97495 1.02528 0.99956 1.69880 1.18305 1.45558 1.29881 0.85685 0.80107 0.79831 0.76662 1.21605 1.23927 1.15810 1.46180 1.65826 1.14082 1.09287 1.20355 0.76386 0.86763 0.85238 1.90614 1.52580 1.16910 1.85964 1.21637 1.02785 1.00046 0.92891 1.19494 1.02960 0.95663 0.86147 1.24251 0.87007 0.97654 0.97515 1.70385 1.35797 1.18351 1.05360 1.27218 0.80218 0.95467 0.99158 1.48097 1.10947 1.41877 1.18924 0.69469 1.78119 1.21688 1.18198 1.00425 0.93996 0.89549 0.91070 0.86704 0.89790 0.95642 0.92530 0.90768 0.80367 0.93986 0.76303 0.86831 0.91031 0.90782 0.87433 0.70255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.48 71.98 0.68 -2.65 16 2 C 0.14 4.05 2.57 44.99 0.12 4.17 16 3 H 0.06 2.05 7.58 -2.39 -0.02 2.04 16 4 C -0.12 -3.00 4.43 30.60 0.14 -2.86 16 5 C 0.17 5.72 2.89 44.99 0.13 5.85 16 6 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 7 C -0.16 -4.83 9.49 71.98 0.68 -4.15 16 8 N -0.74 -31.72 3.65 -322.94 -1.18 -32.90 16 9 C -0.21 -11.75 10.41 84.03 0.87 -10.88 16 10 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 11 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 12 N -0.98 -64.20 13.97 21.65 0.30 -63.90 16 13 Si 0.95 44.54 25.17 68.60 1.73 46.26 16 14 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 15 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 16 H -0.23 -8.87 4.62 99.48 0.46 -8.42 16 17 N -0.70 -23.31 3.80 -442.53 -1.68 -24.99 16 18 C 0.53 20.01 7.79 87.66 0.68 20.69 16 19 O -0.58 -24.90 15.64 -3.04 -0.05 -24.94 16 20 C -0.13 -4.81 5.26 29.85 0.16 -4.66 16 21 C 0.00 -0.08 5.13 29.85 0.15 0.07 16 22 C 0.22 7.59 7.39 138.63 1.03 8.61 16 23 N -0.57 -16.32 11.19 -191.80 -2.15 -18.46 16 24 C 0.28 5.24 13.13 180.36 2.37 7.61 16 25 N -0.48 -11.07 7.45 -60.49 -0.45 -11.52 16 26 H 0.46 6.83 8.96 -213.10 -1.91 4.92 16 27 N -0.35 -12.79 12.80 -51.34 -0.66 -13.44 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.36 14.35 3.77 -92.71 -0.35 14.00 16 37 H 0.25 15.89 8.31 -92.70 -0.77 15.12 16 38 H 0.40 12.69 5.12 -92.71 -0.47 12.22 16 39 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.07 3.04 5.04 -2.38 -0.01 3.03 16 41 H 0.07 2.93 8.10 -2.38 -0.02 2.91 16 42 H 0.11 3.51 8.10 -2.39 -0.02 3.49 16 43 H 0.28 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -84.20 348.45 1.40 -82.80 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -1.94 Total: 42.47 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 7.47 Total: 18.61 kcal Atomic # 7 Polarization: -159.40 SS G_CDS: -5.81 Total: -165.21 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.73 Total: 46.26 kcal Total: -84.20 1.40 -82.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134044381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.358 kcal (2) G-P(sol) polarization free energy of solvation -84.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds