Wall clock time and date at job start Fri Apr 10 2020 17:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47027 * 180.02562 * 12 11 9 14 14 C 1.35353 * 126.91112 * 274.68657 * 13 12 11 15 15 N 1.33773 * 106.49458 * 179.90433 * 14 13 12 16 16 N 1.28634 * 108.88599 * 0.37000 * 15 14 13 17 17 N 1.28716 * 110.17848 * 359.76554 * 16 15 14 18 18 H 0.97003 * 125.87111 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 20 20 C 1.36935 * 120.00239 * 275.00034 * 19 2 1 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 2 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 2 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 29 29 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 32 32 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 33 33 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 34 34 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 35 35 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 36 36 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 37 37 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 38 38 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 39 39 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 40 40 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 41 41 H 1.07994 * 126.75107 * 0.04405 * 14 13 12 42 42 H 0.97004 * 119.99747 * 95.00774 * 19 2 1 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 6 7.3634 4.3152 -0.9114 14 6 7.9043 4.8763 -2.0179 15 7 8.0881 6.1710 -1.7361 16 7 7.6948 6.3950 -0.5320 17 7 7.2526 5.3094 -0.0002 18 1 6.9002 5.2195 0.8991 19 7 2.0183 -0.6906 1.1962 20 6 2.1490 -0.0075 2.3758 21 1 1.8918 1.0403 2.4244 22 6 2.6122 -0.6617 3.5091 23 7 2.9205 -1.9400 3.4511 24 14 2.7899 0.2699 5.1184 25 1 3.2931 -0.6500 6.1700 26 1 3.7495 1.3891 4.9391 27 1 1.4684 0.8113 5.5254 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1369 33 1 3.8002 -2.4818 -2.3594 34 1 3.6547 -1.0591 -3.4193 35 1 5.1716 -1.3615 -2.5380 36 1 3.3284 1.4130 -1.9027 37 1 5.5290 2.9085 -2.3301 38 1 4.8577 3.2954 -0.7276 39 1 6.9954 2.6202 0.3316 40 1 7.6673 2.2333 -1.2706 41 1 8.1390 4.3775 -2.9465 42 1 2.2490 -1.6318 1.1526 43 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135497156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:27 Heat of formation + Delta-G solvation = 47.653702 kcal Electronic energy + Delta-G solvation = -23887.126896 eV Core-core repulsion = 20390.166806 eV Total energy + Delta-G solvation = -3496.960090 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.51051 -39.75162 -37.11193 -34.85730 -34.43384 -33.35294 -32.41196 -31.08919 -29.72842 -28.35954 -26.45594 -25.26532 -23.46914 -23.16257 -22.06396 -21.17546 -20.27889 -19.93531 -18.46872 -17.49108 -17.01914 -16.29116 -15.94574 -15.62227 -14.91746 -14.61986 -14.30681 -14.25574 -13.85803 -13.62928 -13.34773 -13.17795 -12.91939 -12.52619 -12.22274 -12.16692 -11.91009 -11.76239 -11.73656 -11.53058 -11.08467 -11.03089 -10.80024 -10.78594 -10.54399 -10.51609 -10.15541 -9.98955 -9.74979 -9.33295 -9.17510 -8.92879 -8.81607 -7.03460 -6.09280 -3.08970 1.31767 2.32199 2.52539 2.82146 3.32639 3.47965 3.51607 3.69604 4.23119 4.44929 4.65872 4.67224 4.72565 4.92999 5.02038 5.06819 5.21816 5.28535 5.31051 5.37552 5.55491 5.61007 5.72539 5.75284 5.77136 5.82624 5.88171 5.91210 6.00074 6.16385 6.23858 6.30939 6.42117 6.55955 6.60231 6.69805 6.80767 6.95228 7.67810 7.78484 8.22263 8.42504 8.75716 9.23004 10.09131 10.24032 11.39064 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.011802 B = 0.004217 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.819427 B = 6638.543880 C = 8081.610056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.046 0.954 4 C -0.133 4.133 5 C 0.144 3.856 6 H 0.101 0.899 7 C -0.161 4.161 8 N -0.716 5.716 9 C 0.514 3.486 10 O -0.534 6.534 11 C -0.136 4.136 12 C -0.035 4.035 13 C -0.002 4.002 14 C -0.050 4.050 15 N -0.268 5.268 16 N -0.085 5.085 17 N -0.388 5.388 18 H 0.450 0.550 19 N -0.732 5.732 20 C -0.327 4.327 21 H 0.060 0.940 22 C -0.043 4.043 23 N -0.943 5.943 24 Si 1.077 2.923 25 H -0.285 1.285 26 H -0.298 1.298 27 H -0.296 1.296 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.395 0.605 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.191 0.809 42 H 0.366 0.634 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.494 8.647 -13.875 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.064 0.936 4 C -0.171 4.171 5 C 0.040 3.960 6 H 0.119 0.881 7 C -0.219 4.219 8 N -0.367 5.367 9 C 0.300 3.700 10 O -0.410 6.410 11 C -0.177 4.177 12 C -0.075 4.075 13 C -0.136 4.136 14 C -0.207 4.207 15 N -0.136 5.136 16 N -0.065 5.065 17 N -0.109 5.109 18 H 0.296 0.704 19 N -0.375 5.375 20 C -0.458 4.458 21 H 0.078 0.922 22 C -0.241 4.241 23 N -0.588 5.588 24 Si 0.908 3.092 25 H -0.210 1.210 26 H -0.225 1.225 27 H -0.224 1.224 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.228 0.772 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.208 0.792 42 H 0.199 0.801 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.789 9.718 -11.783 16.007 hybrid contribution -1.365 -0.978 -1.384 2.176 sum 3.424 8.740 -13.167 16.171 Atomic orbital electron populations 1.22447 0.99487 1.00762 0.99881 1.20144 0.91521 0.95454 0.86087 0.93589 1.22193 0.93891 1.02124 0.98938 1.20999 0.94947 0.80379 0.99689 0.88058 1.22182 1.01558 1.00140 0.98037 1.45962 1.16502 1.11607 1.62629 1.20358 0.82030 0.89777 0.77883 1.90744 1.51050 1.56638 1.42613 1.21640 0.97437 0.94868 1.03745 1.19903 0.96341 0.86740 1.04501 1.22395 1.05995 0.94036 0.91163 1.23430 1.05485 0.91423 1.00352 1.75092 1.16988 1.15704 1.05769 1.78295 1.14751 1.08764 1.04717 1.45196 1.43173 1.06631 1.15889 0.70445 1.42406 1.79145 1.09689 1.06250 1.19935 1.41820 0.94860 0.89201 0.92182 1.25667 0.99493 0.97495 1.01453 1.70873 1.51327 1.08195 1.28397 0.83288 0.75709 0.74313 0.75894 1.21010 1.22529 1.22395 0.92863 0.94584 0.93649 0.90799 0.91896 0.91822 0.93052 0.92436 0.77200 0.88491 0.88915 0.89101 0.87782 0.79232 0.80114 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.49 37.16 0.35 -2.46 16 2 C 0.18 3.23 2.84 -67.93 -0.19 3.03 16 3 H 0.05 0.86 7.56 -51.93 -0.39 0.46 16 4 C -0.13 -1.89 4.29 -26.73 -0.11 -2.01 16 5 C 0.14 2.14 2.52 -67.93 -0.17 1.97 16 6 H 0.10 2.03 7.05 -51.93 -0.37 1.66 16 7 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 8 N -0.72 -9.12 4.45 -53.80 -0.24 -9.36 16 9 C 0.51 7.07 7.79 -10.98 -0.09 6.98 16 10 O -0.53 -9.79 15.64 5.56 0.09 -9.71 16 11 C -0.14 -1.24 5.68 -27.88 -0.16 -1.40 16 12 C -0.03 -0.32 5.07 -27.88 -0.14 -0.46 16 13 C 0.00 -0.02 6.56 -82.09 -0.54 -0.55 16 14 C -0.05 -0.49 11.99 -17.74 -0.21 -0.70 16 15 N -0.27 -3.42 12.41 30.23 0.38 -3.05 16 16 N -0.09 -1.04 13.38 60.35 0.81 -0.24 16 17 N -0.39 -3.65 6.98 33.54 0.23 -3.42 16 18 H 0.45 2.96 8.96 -190.40 -1.71 1.25 16 19 N -0.73 -17.33 4.49 -53.43 -0.24 -17.57 16 20 C -0.33 -8.90 9.93 -15.06 -0.15 -9.05 16 21 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 22 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 23 N -0.94 -28.95 13.70 55.49 0.76 -28.19 16 24 Si 1.08 25.82 29.92 -169.99 -5.09 20.73 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.39 3.87 8.60 -40.82 -0.35 3.52 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.10 0.94 8.10 -51.93 -0.42 0.51 16 41 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.37 9.11 6.63 -40.82 -0.27 8.83 16 43 H 0.25 7.71 6.77 -40.82 -0.28 7.43 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -35.67 362.52 -7.06 -42.73 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -8.06 Total: 10.27 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -1.16 Total: -7.66 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 1.70 Total: -61.83 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.09 Total: 20.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.67 -7.06 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135497156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.384 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds