Wall clock time and date at job start Fri Apr 10 2020 17:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47027 * 180.02562 * 12 11 9 14 14 C 1.35353 * 126.91112 * 274.68657 * 13 12 11 15 15 N 1.33773 * 106.49458 * 179.90433 * 14 13 12 16 16 N 1.28634 * 108.88599 * 0.37000 * 15 14 13 17 17 N 1.28716 * 110.17848 * 359.76554 * 16 15 14 18 18 H 0.97003 * 125.87111 * 180.02562 * 17 16 15 19 19 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 20 20 C 1.36935 * 120.00239 * 275.00034 * 19 2 1 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 2 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 2 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 29 29 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 30 30 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 32 32 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 33 33 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 34 34 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 35 35 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 36 36 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 37 37 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 38 38 H 1.09003 * 109.46775 * 59.99881 * 11 9 8 39 39 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 40 40 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 41 41 H 1.07994 * 126.75107 * 0.04405 * 14 13 12 42 42 H 0.97004 * 119.99747 * 95.00774 * 19 2 1 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 6 7.3634 4.3152 -0.9114 14 6 7.9043 4.8763 -2.0179 15 7 8.0881 6.1710 -1.7361 16 7 7.6948 6.3950 -0.5320 17 7 7.2526 5.3094 -0.0002 18 1 6.9002 5.2195 0.8991 19 7 2.0183 -0.6906 1.1962 20 6 2.1490 -0.0075 2.3758 21 1 1.8918 1.0403 2.4244 22 6 2.6122 -0.6617 3.5091 23 7 2.9205 -1.9400 3.4511 24 14 2.7899 0.2699 5.1184 25 1 3.2931 -0.6500 6.1700 26 1 3.7495 1.3891 4.9391 27 1 1.4684 0.8113 5.5254 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1369 33 1 3.8002 -2.4818 -2.3594 34 1 3.6547 -1.0591 -3.4193 35 1 5.1716 -1.3615 -2.5380 36 1 3.3284 1.4130 -1.9027 37 1 5.5290 2.9085 -2.3301 38 1 4.8577 3.2954 -0.7276 39 1 6.9954 2.6202 0.3316 40 1 7.6673 2.2333 -1.2706 41 1 8.1390 4.3775 -2.9465 42 1 2.2490 -1.6318 1.1526 43 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135497156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:27 Heat of formation + Delta-G solvation = 20.671839 kcal Electronic energy + Delta-G solvation = -23888.296918 eV Core-core repulsion = 20390.166806 eV Total energy + Delta-G solvation = -3498.130112 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.30915 -40.87499 -38.49976 -36.29077 -35.40455 -34.19267 -34.11753 -32.24958 -30.63928 -30.13293 -27.66376 -26.14427 -25.51583 -23.98234 -22.96024 -22.27993 -21.44589 -21.26036 -19.46239 -19.24083 -18.09744 -17.27316 -16.96681 -16.71867 -16.47907 -15.95563 -15.47905 -15.40870 -15.23301 -14.86714 -14.58871 -14.35808 -14.11062 -13.54577 -13.43015 -13.33388 -13.10265 -12.90111 -12.75987 -12.75023 -12.52750 -12.32293 -12.17169 -11.91411 -11.85560 -11.81874 -11.61275 -11.55770 -11.17225 -10.91168 -10.84222 -10.16054 -9.95806 -9.04986 -8.33656 -5.25578 0.53705 1.52219 1.53695 1.63764 1.76266 1.79646 1.82816 2.34644 2.71783 3.45064 3.45378 3.67351 3.74135 3.85504 3.88948 4.01557 4.06447 4.22070 4.28573 4.33736 4.49462 4.50123 4.59880 4.65125 4.73206 4.78179 4.87810 4.96559 4.99244 5.02000 5.04120 5.20338 5.20608 5.28461 5.38248 5.53850 5.61667 5.68784 5.92623 6.54032 6.67900 7.16374 7.41169 7.41382 8.06966 8.18578 9.18646 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.011802 B = 0.004217 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.819427 B = 6638.543880 C = 8081.610056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 H 0.045 0.955 4 C -0.120 4.120 5 C 0.147 3.853 6 H 0.042 0.958 7 C -0.151 4.151 8 N -0.707 5.707 9 C 0.506 3.494 10 O -0.589 6.589 11 C -0.124 4.124 12 C -0.027 4.027 13 C 0.008 3.992 14 C -0.048 4.048 15 N -0.300 5.300 16 N -0.112 5.112 17 N -0.378 5.378 18 H 0.460 0.540 19 N -0.744 5.744 20 C -0.315 4.315 21 H 0.062 0.938 22 C -0.108 4.108 23 N -0.980 5.980 24 Si 1.119 2.881 25 H -0.297 1.297 26 H -0.281 1.281 27 H -0.278 1.278 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.413 0.587 37 H 0.132 0.868 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.219 0.781 42 H 0.355 0.645 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.415 10.209 -16.010 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.158 4.158 5 C 0.042 3.958 6 H 0.060 0.940 7 C -0.209 4.209 8 N -0.359 5.359 9 C 0.294 3.706 10 O -0.469 6.469 11 C -0.164 4.164 12 C -0.067 4.067 13 C -0.127 4.127 14 C -0.206 4.206 15 N -0.166 5.166 16 N -0.091 5.091 17 N -0.101 5.101 18 H 0.308 0.692 19 N -0.386 5.386 20 C -0.447 4.447 21 H 0.080 0.920 22 C -0.299 4.299 23 N -0.629 5.629 24 Si 0.946 3.054 25 H -0.223 1.223 26 H -0.207 1.207 27 H -0.204 1.204 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.250 0.750 37 H 0.150 0.850 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.236 0.764 42 H 0.187 0.813 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.649 11.356 -13.974 18.373 hybrid contribution -1.075 -1.471 -0.800 1.990 sum 2.574 9.886 -14.774 17.962 Atomic orbital electron populations 1.22314 0.98002 1.00686 1.00705 1.20449 0.92355 0.95299 0.85685 0.93685 1.22091 0.93281 1.01937 0.98487 1.20753 0.95132 0.81825 0.98106 0.93982 1.22074 1.00613 0.99989 0.98219 1.45882 1.16696 1.11159 1.62183 1.21185 0.81578 0.91255 0.76627 1.90729 1.52633 1.58506 1.45018 1.21630 0.97264 0.91408 1.06112 1.19796 0.96684 0.86598 1.03627 1.22360 1.05682 0.93701 0.90963 1.23954 1.04584 0.90561 1.01497 1.75068 1.18060 1.17310 1.06193 1.78259 1.16037 1.09767 1.05071 1.45246 1.42298 1.06176 1.16398 0.69217 1.42637 1.79438 1.09366 1.07188 1.20257 1.39133 0.94946 0.90346 0.91982 1.26963 1.00312 0.97634 1.04990 1.70980 1.54456 1.09531 1.27929 0.82726 0.76774 0.73573 0.72366 1.22319 1.20721 1.20389 0.95402 0.90331 0.94190 0.91050 0.87442 0.91713 0.89875 0.93972 0.75048 0.85008 0.87750 0.90678 0.87497 0.76447 0.81325 0.94682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 9.49 71.98 0.68 -4.29 16 2 C 0.17 5.89 2.84 44.99 0.13 6.02 16 3 H 0.05 1.57 7.56 -2.38 -0.02 1.56 16 4 C -0.12 -3.11 4.29 30.60 0.13 -2.98 16 5 C 0.15 4.23 2.52 45.00 0.11 4.34 16 6 H 0.04 1.75 7.05 -2.39 -0.02 1.73 16 7 C -0.15 -3.54 9.48 71.98 0.68 -2.85 16 8 N -0.71 -16.59 4.45 -442.51 -1.97 -18.55 16 9 C 0.51 13.34 7.79 87.66 0.68 14.02 16 10 O -0.59 -22.04 15.64 -3.04 -0.05 -22.09 16 11 C -0.12 -1.94 5.68 29.85 0.17 -1.77 16 12 C -0.03 -0.45 5.07 29.85 0.15 -0.30 16 13 C 0.01 0.13 6.56 41.36 0.27 0.40 16 14 C -0.05 -0.84 11.99 83.73 1.00 0.16 16 15 N -0.30 -7.28 12.41 -58.26 -0.72 -8.00 16 16 N -0.11 -2.64 13.38 37.02 0.50 -2.15 16 17 N -0.38 -6.64 6.98 -47.79 -0.33 -6.97 16 18 H 0.46 5.54 8.96 -219.95 -1.97 3.57 16 19 N -0.74 -35.65 4.49 -322.94 -1.45 -37.10 16 20 C -0.31 -17.28 9.93 84.03 0.83 -16.45 16 21 H 0.06 3.32 7.83 -2.91 -0.02 3.30 16 22 C -0.11 -6.28 5.50 84.86 0.47 -5.82 16 23 N -0.98 -62.20 13.70 21.65 0.30 -61.90 16 24 Si 1.12 52.47 29.92 68.60 2.05 54.52 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 28 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.41 6.56 8.60 -92.71 -0.80 5.77 16 37 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 40 H 0.11 1.77 8.10 -2.39 -0.02 1.75 16 41 H 0.22 2.28 8.06 -2.91 -0.02 2.25 16 42 H 0.36 18.34 6.63 -92.71 -0.61 17.73 16 43 H 0.24 15.37 6.77 -92.71 -0.63 14.74 16 Total: -1.00 -81.36 362.52 1.44 -79.93 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -2.21 Total: 31.81 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 5.32 Total: -9.51 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -3.68 Total: -134.67 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.05 Total: -22.09 kcal Atomic # 14 Polarization: 52.47 SS G_CDS: 2.05 Total: 54.52 kcal Total: -81.36 1.44 -79.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135497156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.599 kcal (2) G-P(sol) polarization free energy of solvation -81.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds