Wall clock time and date at job start Fri Apr 10 2020 17:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46928 * 2 1 4 4 C 1.52998 * 109.47131 * 119.99825 * 2 1 3 5 5 C 1.52995 * 109.47269 * 185.00274 * 4 2 1 6 6 H 1.09005 * 109.47135 * 304.99803 * 5 4 2 7 7 C 1.53005 * 109.47337 * 184.99677 * 5 4 2 8 8 N 1.46500 * 109.47329 * 64.99812 * 5 4 2 9 9 C 1.34780 * 120.00136 * 205.00110 * 8 5 4 10 10 O 1.21279 * 120.00136 * 0.02562 * 9 8 5 11 11 C 1.50700 * 119.99830 * 179.97438 * 9 8 5 12 12 C 1.53003 * 109.47148 * 180.02562 * 11 9 8 13 13 C 1.50690 * 109.47160 * 180.02562 * 12 11 9 14 14 C 1.35351 * 126.91729 * 274.95578 * 13 12 11 15 15 N 1.33769 * 106.50107 * 180.02562 * 14 13 12 16 16 N 1.28629 * 108.88659 * 359.97438 * 15 14 13 17 17 N 1.28714 * 110.17964 * 0.02562 * 16 15 14 18 18 H 0.97001 * 125.86941 * 179.73092 * 17 16 15 19 19 N 1.46506 * 109.47235 * 239.99706 * 2 1 3 20 20 C 1.36936 * 120.00117 * 85.00013 * 19 2 1 21 21 H 1.08003 * 119.99701 * 359.97438 * 20 19 2 22 22 C 1.38804 * 120.00240 * 179.97438 * 20 19 2 23 23 N 1.31618 * 120.00215 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99732 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47543 * 89.99659 * 24 22 20 26 26 H 1.48507 * 109.46940 * 209.99555 * 24 22 20 27 27 H 1.48494 * 109.47435 * 329.99457 * 24 22 20 28 28 H 1.09007 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47604 * 300.00157 * 1 2 3 30 30 H 1.09005 * 109.47254 * 60.00448 * 1 2 3 31 31 H 1.09000 * 109.47725 * 64.99756 * 4 2 1 32 32 H 1.09000 * 109.46977 * 305.00094 * 4 2 1 33 33 H 1.09000 * 109.46875 * 60.00148 * 7 5 4 34 34 H 1.08997 * 109.47103 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.47257 * 299.99862 * 7 5 4 36 36 H 0.96999 * 120.00038 * 24.99744 * 8 5 4 37 37 H 1.09004 * 109.47468 * 60.00474 * 11 9 8 38 38 H 1.08997 * 109.47733 * 300.00178 * 11 9 8 39 39 H 1.08996 * 109.46925 * 59.99700 * 12 11 9 40 40 H 1.09004 * 109.46804 * 300.00198 * 12 11 9 41 41 H 1.08004 * 126.74797 * 0.05551 * 14 13 12 42 42 H 0.96993 * 119.99678 * 265.00033 * 19 2 1 43 43 H 0.96999 * 120.00163 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4381 2.4926 8 7 3.9479 0.7895 1.4925 9 6 5.1612 1.2136 1.0867 10 8 5.9356 0.4342 0.5733 11 6 5.5550 2.6567 1.2701 12 6 6.9698 2.8719 0.7288 13 6 7.3638 4.3147 0.9127 14 6 7.0864 5.3457 0.0807 15 7 7.6260 6.4370 0.6350 16 7 8.1991 6.1041 1.7374 17 7 8.0664 4.8404 1.9428 18 1 8.4139 4.3487 2.7034 19 7 2.0184 -0.6907 -1.1962 20 6 2.1492 -0.0076 -2.3758 21 1 1.8919 1.0402 -2.4244 22 6 2.6124 -0.6619 -3.5090 23 7 2.7376 -0.0055 -4.6429 24 14 3.0566 -2.4743 -3.4249 25 1 1.8596 -3.2928 -3.7448 26 1 4.1325 -2.7662 -4.4061 27 1 3.5311 -2.8048 -2.0572 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.7516 -1.7715 1.2057 32 1 1.6053 -0.2617 2.1369 33 1 3.8001 -2.4818 2.3597 34 1 5.1714 -1.3615 2.5383 35 1 3.6546 -1.0591 3.4195 36 1 3.3284 1.4130 1.9027 37 1 5.5290 2.9086 2.3303 38 1 4.8578 3.2954 0.7278 39 1 6.9954 2.6202 -0.3314 40 1 7.6672 2.2332 1.2709 41 1 6.5370 5.2968 -0.8478 42 1 2.2490 -1.6318 -1.1525 43 1 3.0610 -0.4628 -5.4349 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135497157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:31 Heat of formation + Delta-G solvation = 51.895804 kcal Electronic energy + Delta-G solvation = -23888.063048 eV Core-core repulsion = 20391.286909 eV Total energy + Delta-G solvation = -3496.776139 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.47922 -39.76703 -37.14667 -34.81480 -34.40545 -33.33390 -32.20779 -31.14187 -29.77186 -29.22058 -26.48336 -25.24732 -23.33508 -23.14241 -22.03364 -21.13673 -20.30726 -19.86568 -18.45207 -17.69983 -17.00557 -16.29858 -15.93957 -15.63475 -14.83085 -14.52087 -14.45907 -14.18858 -13.78729 -13.60901 -13.36133 -12.96195 -12.68120 -12.50328 -12.43279 -12.15132 -12.02011 -11.93667 -11.74153 -11.50310 -11.25986 -10.98645 -10.95120 -10.76631 -10.69856 -10.52943 -10.30304 -9.98572 -9.75138 -9.57004 -9.29724 -8.91990 -8.84342 -7.25345 -5.74887 -3.09982 1.33446 2.38050 2.51407 2.81502 3.31751 3.39833 3.42130 3.48014 4.25120 4.49489 4.61716 4.67764 4.79405 4.90671 5.04347 5.07777 5.20218 5.21659 5.29356 5.36881 5.47386 5.55822 5.71807 5.75585 5.76311 5.81483 5.82800 5.96318 6.00391 6.14501 6.18687 6.28343 6.38994 6.49464 6.60653 6.68793 6.78744 6.95400 7.66441 7.99874 8.25512 8.41277 8.43888 9.22298 9.95349 10.14329 11.43602 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.003938 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.468916 B = 7107.854149 C = 7957.047656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.054 0.946 4 C -0.135 4.135 5 C 0.142 3.858 6 H 0.100 0.900 7 C -0.161 4.161 8 N -0.716 5.716 9 C 0.516 3.484 10 O -0.536 6.536 11 C -0.136 4.136 12 C -0.034 4.034 13 C -0.004 4.004 14 C -0.044 4.044 15 N -0.266 5.266 16 N -0.088 5.088 17 N -0.392 5.392 18 H 0.446 0.554 19 N -0.746 5.746 20 C -0.239 4.239 21 H 0.088 0.912 22 C 0.007 3.993 23 N -0.934 5.934 24 Si 0.882 3.118 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.277 1.277 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.396 0.604 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.194 0.806 42 H 0.359 0.641 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 3.594 18.536 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.072 0.928 4 C -0.174 4.174 5 C 0.038 3.962 6 H 0.118 0.882 7 C -0.220 4.220 8 N -0.367 5.367 9 C 0.301 3.699 10 O -0.412 6.412 11 C -0.177 4.177 12 C -0.074 4.074 13 C -0.138 4.138 14 C -0.201 4.201 15 N -0.133 5.133 16 N -0.068 5.068 17 N -0.113 5.113 18 H 0.291 0.709 19 N -0.389 5.389 20 C -0.369 4.369 21 H 0.106 0.894 22 C -0.189 4.189 23 N -0.582 5.582 24 Si 0.713 3.287 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.229 0.771 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.104 0.896 41 H 0.211 0.789 42 H 0.192 0.808 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.777 4.634 18.397 19.831 hybrid contribution -0.322 -2.357 0.161 2.385 sum 5.455 2.277 18.558 19.477 Atomic orbital electron populations 1.22430 0.99009 1.00843 1.00345 1.20188 0.91746 0.95798 0.85493 0.92772 1.22219 0.93829 1.02142 0.99160 1.21008 0.95043 0.80569 0.99608 0.88164 1.22187 1.01529 1.00101 0.98143 1.45952 1.16570 1.11504 1.62707 1.20363 0.81976 0.89772 0.77745 1.90731 1.51167 1.56666 1.42671 1.21644 0.97930 0.95003 1.03125 1.19899 0.95652 0.86563 1.05265 1.22383 1.01434 0.98895 0.91056 1.23557 1.05440 0.88072 1.02985 1.75107 1.10121 1.26044 1.02027 1.78274 1.20347 0.94018 1.14199 1.45136 1.38295 1.08040 1.19795 0.70866 1.42779 1.79590 1.09349 1.07160 1.18996 1.36894 0.95455 0.85569 0.89429 1.24628 1.01353 0.97339 0.95591 1.69691 1.52733 1.35533 1.00250 0.86586 0.77986 0.87040 0.77125 1.21306 1.21819 1.20293 0.93647 0.94383 0.92382 0.90794 0.91586 0.91888 0.92492 0.92971 0.77053 0.89345 0.87908 0.87301 0.89644 0.78877 0.80780 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.49 37.16 0.35 -2.30 16 2 C 0.18 3.03 2.84 -67.93 -0.19 2.84 16 3 H 0.05 0.96 7.56 -51.93 -0.39 0.56 16 4 C -0.13 -1.78 4.29 -26.73 -0.11 -1.89 16 5 C 0.14 1.99 2.52 -67.93 -0.17 1.82 16 6 H 0.10 1.88 7.05 -51.93 -0.37 1.51 16 7 C -0.16 -1.88 9.48 37.16 0.35 -1.53 16 8 N -0.72 -8.66 4.45 -53.80 -0.24 -8.90 16 9 C 0.52 6.86 7.79 -10.98 -0.09 6.77 16 10 O -0.54 -9.51 15.64 5.56 0.09 -9.42 16 11 C -0.14 -1.22 5.68 -27.88 -0.16 -1.38 16 12 C -0.03 -0.31 5.07 -27.89 -0.14 -0.45 16 13 C 0.00 -0.04 6.56 -82.09 -0.54 -0.57 16 14 C -0.04 -0.48 11.99 -17.74 -0.21 -0.70 16 15 N -0.27 -3.55 12.41 30.24 0.38 -3.17 16 16 N -0.09 -1.06 13.38 60.35 0.81 -0.25 16 17 N -0.39 -3.35 6.98 33.54 0.23 -3.11 16 18 H 0.45 2.10 8.96 -190.40 -1.71 0.39 16 19 N -0.75 -16.63 4.30 -53.43 -0.23 -16.86 16 20 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 21 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 24 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.40 3.61 8.60 -40.82 -0.35 3.26 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.11 1.18 8.10 -51.93 -0.42 0.76 16 40 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.19 1.79 8.06 -52.48 -0.42 1.36 16 42 H 0.36 8.05 5.66 -40.82 -0.23 7.82 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -35.90 361.10 -6.76 -42.66 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -8.13 Total: 8.51 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.16 Total: -3.99 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 1.72 Total: -60.70 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.90 -6.76 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135497157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.552 kcal (2) G-P(sol) polarization free energy of solvation -35.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds