Wall clock time and date at job start Fri Apr 10 2020 17:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46928 * 2 1 4 4 C 1.52998 * 109.47131 * 119.99825 * 2 1 3 5 5 C 1.52995 * 109.47269 * 185.00274 * 4 2 1 6 6 H 1.09005 * 109.47135 * 304.99803 * 5 4 2 7 7 C 1.53005 * 109.47337 * 184.99677 * 5 4 2 8 8 N 1.46500 * 109.47329 * 64.99812 * 5 4 2 9 9 C 1.34780 * 120.00136 * 205.00110 * 8 5 4 10 10 O 1.21279 * 120.00136 * 0.02562 * 9 8 5 11 11 C 1.50700 * 119.99830 * 179.97438 * 9 8 5 12 12 C 1.53003 * 109.47148 * 180.02562 * 11 9 8 13 13 C 1.50690 * 109.47160 * 180.02562 * 12 11 9 14 14 C 1.35351 * 126.91729 * 274.95578 * 13 12 11 15 15 N 1.33769 * 106.50107 * 180.02562 * 14 13 12 16 16 N 1.28629 * 108.88659 * 359.97438 * 15 14 13 17 17 N 1.28714 * 110.17964 * 0.02562 * 16 15 14 18 18 H 0.97001 * 125.86941 * 179.73092 * 17 16 15 19 19 N 1.46506 * 109.47235 * 239.99706 * 2 1 3 20 20 C 1.36936 * 120.00117 * 85.00013 * 19 2 1 21 21 H 1.08003 * 119.99701 * 359.97438 * 20 19 2 22 22 C 1.38804 * 120.00240 * 179.97438 * 20 19 2 23 23 N 1.31618 * 120.00215 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99732 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47543 * 89.99659 * 24 22 20 26 26 H 1.48507 * 109.46940 * 209.99555 * 24 22 20 27 27 H 1.48494 * 109.47435 * 329.99457 * 24 22 20 28 28 H 1.09007 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47604 * 300.00157 * 1 2 3 30 30 H 1.09005 * 109.47254 * 60.00448 * 1 2 3 31 31 H 1.09000 * 109.47725 * 64.99756 * 4 2 1 32 32 H 1.09000 * 109.46977 * 305.00094 * 4 2 1 33 33 H 1.09000 * 109.46875 * 60.00148 * 7 5 4 34 34 H 1.08997 * 109.47103 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.47257 * 299.99862 * 7 5 4 36 36 H 0.96999 * 120.00038 * 24.99744 * 8 5 4 37 37 H 1.09004 * 109.47468 * 60.00474 * 11 9 8 38 38 H 1.08997 * 109.47733 * 300.00178 * 11 9 8 39 39 H 1.08996 * 109.46925 * 59.99700 * 12 11 9 40 40 H 1.09004 * 109.46804 * 300.00198 * 12 11 9 41 41 H 1.08004 * 126.74797 * 0.05551 * 14 13 12 42 42 H 0.96993 * 119.99678 * 265.00033 * 19 2 1 43 43 H 0.96999 * 120.00163 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4381 2.4926 8 7 3.9479 0.7895 1.4925 9 6 5.1612 1.2136 1.0867 10 8 5.9356 0.4342 0.5733 11 6 5.5550 2.6567 1.2701 12 6 6.9698 2.8719 0.7288 13 6 7.3638 4.3147 0.9127 14 6 7.0864 5.3457 0.0807 15 7 7.6260 6.4370 0.6350 16 7 8.1991 6.1041 1.7374 17 7 8.0664 4.8404 1.9428 18 1 8.4139 4.3487 2.7034 19 7 2.0184 -0.6907 -1.1962 20 6 2.1492 -0.0076 -2.3758 21 1 1.8919 1.0402 -2.4244 22 6 2.6124 -0.6619 -3.5090 23 7 2.7376 -0.0055 -4.6429 24 14 3.0566 -2.4743 -3.4249 25 1 1.8596 -3.2928 -3.7448 26 1 4.1325 -2.7662 -4.4061 27 1 3.5311 -2.8048 -2.0572 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.7516 -1.7715 1.2057 32 1 1.6053 -0.2617 2.1369 33 1 3.8001 -2.4818 2.3597 34 1 5.1714 -1.3615 2.5383 35 1 3.6546 -1.0591 3.4195 36 1 3.3284 1.4130 1.9027 37 1 5.5290 2.9086 2.3303 38 1 4.8578 3.2954 0.7278 39 1 6.9954 2.6202 -0.3314 40 1 7.6672 2.2332 1.2709 41 1 6.5370 5.2968 -0.8478 42 1 2.2490 -1.6318 -1.1525 43 1 3.0610 -0.4628 -5.4349 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135497157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:30 Heat of formation + Delta-G solvation = 24.108350 kcal Electronic energy + Delta-G solvation = -23889.268003 eV Core-core repulsion = 20391.286909 eV Total energy + Delta-G solvation = -3497.981093 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.31106 -40.83444 -38.45937 -36.15172 -35.38711 -34.17453 -34.03782 -32.33555 -31.07367 -30.49333 -27.58900 -26.11936 -25.29003 -23.99916 -22.92712 -22.19143 -21.46545 -21.17134 -19.67597 -19.24347 -18.03744 -17.28464 -16.94166 -16.68570 -16.44802 -15.87959 -15.42465 -15.31020 -15.18242 -14.65625 -14.56635 -14.34133 -14.07030 -13.96436 -13.40414 -13.31738 -13.19015 -12.95098 -12.79433 -12.76540 -12.60039 -12.36037 -12.30769 -11.96277 -11.83232 -11.80684 -11.64644 -11.60025 -11.41106 -10.94496 -10.81343 -10.15982 -9.90797 -9.23882 -7.98329 -5.28173 0.53206 1.36074 1.39933 1.45864 1.49900 1.78501 1.84249 2.39368 2.50586 3.35129 3.46939 3.68662 3.69311 3.84775 3.89381 4.02145 4.11462 4.23691 4.33675 4.39209 4.46082 4.56412 4.63534 4.70436 4.80009 4.85422 4.94390 5.01207 5.03814 5.05329 5.10467 5.18958 5.25510 5.36304 5.42777 5.62783 5.71055 5.84009 5.98932 6.26478 6.71877 7.14530 7.40448 7.44661 7.93583 8.08720 9.23722 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.003938 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.468916 B = 7107.854149 C = 7957.047656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 H 0.047 0.953 4 C -0.122 4.122 5 C 0.141 3.859 6 H 0.048 0.952 7 C -0.151 4.151 8 N -0.708 5.708 9 C 0.507 3.493 10 O -0.588 6.588 11 C -0.126 4.126 12 C -0.026 4.026 13 C 0.013 3.987 14 C -0.058 4.058 15 N -0.301 5.301 16 N -0.107 5.107 17 N -0.370 5.370 18 H 0.463 0.537 19 N -0.749 5.749 20 C -0.212 4.212 21 H 0.057 0.943 22 C -0.065 4.065 23 N -0.986 5.986 24 Si 0.945 3.055 25 H -0.279 1.279 26 H -0.304 1.304 27 H -0.256 1.256 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.025 0.975 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.413 0.587 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.203 0.797 42 H 0.361 0.639 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.849 2.711 22.079 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.060 3.940 3 H 0.065 0.935 4 C -0.160 4.160 5 C 0.036 3.964 6 H 0.066 0.934 7 C -0.209 4.209 8 N -0.360 5.360 9 C 0.295 3.705 10 O -0.468 6.468 11 C -0.166 4.166 12 C -0.066 4.066 13 C -0.122 4.122 14 C -0.216 4.216 15 N -0.167 5.167 16 N -0.087 5.087 17 N -0.094 5.094 18 H 0.313 0.687 19 N -0.393 5.393 20 C -0.343 4.343 21 H 0.075 0.925 22 C -0.256 4.256 23 N -0.638 5.638 24 Si 0.774 3.226 25 H -0.205 1.205 26 H -0.231 1.231 27 H -0.181 1.181 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.250 0.750 37 H 0.143 0.857 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.220 0.780 42 H 0.193 0.807 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.916 3.768 22.056 22.909 hybrid contribution -0.119 -2.019 -0.863 2.199 sum 4.797 1.749 21.193 21.799 Atomic orbital electron populations 1.22305 0.97525 1.01246 1.00777 1.20510 0.92630 0.95583 0.85282 0.93473 1.22133 0.93039 1.02450 0.98362 1.20869 0.95425 0.81727 0.98421 0.93390 1.22081 1.00540 1.00136 0.98180 1.45898 1.16610 1.11328 1.62156 1.21095 0.81702 0.91051 0.76643 1.90713 1.52711 1.58380 1.44994 1.21629 0.97548 0.91939 1.05495 1.19786 0.96295 0.86336 1.04223 1.22251 1.00800 0.98401 0.90741 1.23863 1.05790 0.88153 1.03757 1.75080 1.11364 1.27364 1.02908 1.78207 1.20938 0.95312 1.14197 1.45110 1.37098 1.07246 1.19959 0.68741 1.42853 1.79743 1.09428 1.07257 1.18973 1.33815 0.94265 0.87238 0.92521 1.25366 1.02979 1.01799 0.95480 1.69867 1.55436 1.37392 1.01103 0.85541 0.77432 0.81928 0.77680 1.20506 1.23136 1.18069 0.93246 0.90325 0.95591 0.90075 0.87213 0.91337 0.94089 0.90029 0.74998 0.85685 0.87281 0.89373 0.88653 0.77984 0.80657 0.93762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 9.49 71.98 0.68 -3.95 16 2 C 0.17 5.36 2.84 44.99 0.13 5.48 16 3 H 0.05 1.58 7.56 -2.39 -0.02 1.56 16 4 C -0.12 -2.73 4.29 30.59 0.13 -2.60 16 5 C 0.14 3.61 2.52 44.99 0.11 3.73 16 6 H 0.05 1.77 7.05 -2.38 -0.02 1.76 16 7 C -0.15 -3.06 9.48 71.98 0.68 -2.38 16 8 N -0.71 -15.42 4.45 -442.52 -1.97 -17.38 16 9 C 0.51 12.84 7.79 87.66 0.68 13.52 16 10 O -0.59 -20.97 15.64 -3.03 -0.05 -21.02 16 11 C -0.13 -1.98 5.68 29.85 0.17 -1.81 16 12 C -0.03 -0.45 5.07 29.85 0.15 -0.30 16 13 C 0.01 0.22 6.56 41.35 0.27 0.49 16 14 C -0.06 -1.25 11.99 83.73 1.00 -0.25 16 15 N -0.30 -7.93 12.41 -58.25 -0.72 -8.65 16 16 N -0.11 -2.46 13.38 37.02 0.50 -1.96 16 17 N -0.37 -5.65 6.98 -47.79 -0.33 -5.99 16 18 H 0.46 3.22 8.96 -219.96 -1.97 1.25 16 19 N -0.75 -32.88 4.30 -322.94 -1.39 -34.27 16 20 C -0.21 -11.76 10.41 84.03 0.87 -10.88 16 21 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 22 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 23 N -0.99 -63.93 13.97 21.65 0.30 -63.62 16 24 Si 0.95 46.67 27.74 68.60 1.90 48.57 16 25 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 27 H -0.26 -11.56 6.52 99.48 0.65 -10.91 16 28 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.11 1.59 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.41 6.00 8.60 -92.71 -0.80 5.21 16 37 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 1.93 8.10 -2.39 -0.02 1.91 16 40 H 0.09 1.46 8.10 -2.38 -0.02 1.44 16 41 H 0.20 3.74 8.06 -2.91 -0.02 3.72 16 42 H 0.36 15.67 5.66 -92.71 -0.52 15.14 16 43 H 0.25 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -82.46 361.10 1.28 -81.17 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -2.32 Total: 25.49 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 5.36 Total: -2.34 kcal Atomic # 7 Polarization: -128.26 SS G_CDS: -3.61 Total: -131.88 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.05 Total: -21.02 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.90 Total: 48.57 kcal Total: -82.46 1.28 -81.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135497157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.281 kcal (2) G-P(sol) polarization free energy of solvation -82.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds