Wall clock time and date at job start Fri Apr 10 2020 17:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47405 * 240.00131 * 2 1 3 5 5 C 1.52995 * 109.47310 * 175.00008 * 4 2 1 6 6 H 1.09001 * 109.47703 * 304.99972 * 5 4 2 7 7 C 1.53000 * 109.47178 * 184.99667 * 5 4 2 8 8 N 1.46507 * 109.47293 * 65.00006 * 5 4 2 9 9 C 1.36927 * 120.00350 * 204.99908 * 8 5 4 10 10 H 1.08007 * 120.00261 * 0.02562 * 9 8 5 11 11 C 1.38816 * 120.00261 * 179.97438 * 9 8 5 12 12 N 1.31617 * 119.99778 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00132 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47229 * 90.00213 * 13 11 9 15 15 H 1.48499 * 109.46950 * 210.00077 * 13 11 9 16 16 H 1.48497 * 109.47294 * 330.00115 * 13 11 9 17 17 N 1.46496 * 109.47084 * 120.00037 * 2 1 3 18 18 C 1.34779 * 120.00054 * 274.99976 * 17 2 1 19 19 O 1.21273 * 120.00093 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99767 * 179.97438 * 18 17 2 21 21 C 1.53000 * 109.46735 * 180.02562 * 20 18 17 22 22 C 1.50703 * 109.46912 * 180.02562 * 21 20 18 23 23 C 1.35356 * 126.90859 * 274.68560 * 22 21 20 24 24 N 1.33773 * 106.49105 * 179.90761 * 23 22 21 25 25 N 1.28636 * 108.88820 * 0.36428 * 24 23 22 26 26 N 1.28715 * 110.17860 * 359.77361 * 25 24 23 27 27 H 0.96994 * 125.86810 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.46647 * 59.99604 * 1 2 3 29 29 H 1.08999 * 109.47646 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47281 * 300.00108 * 1 2 3 31 31 H 1.09004 * 109.47238 * 295.00344 * 4 2 1 32 32 H 1.09001 * 109.46658 * 54.99996 * 4 2 1 33 33 H 1.09003 * 109.47020 * 60.00433 * 7 5 4 34 34 H 1.08999 * 109.47439 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.47523 * 300.00143 * 7 5 4 36 36 H 0.97003 * 119.99336 * 24.99474 * 8 5 4 37 37 H 0.96998 * 120.00214 * 179.97438 * 12 11 9 38 38 H 0.97005 * 120.00266 * 94.99798 * 17 2 1 39 39 H 1.09001 * 109.46797 * 60.00350 * 20 18 17 40 40 H 1.08992 * 109.47518 * 300.00347 * 20 18 17 41 41 H 1.09002 * 109.47398 * 300.00410 * 21 20 18 42 42 H 1.09001 * 109.47194 * 60.00591 * 21 20 18 43 43 H 1.07990 * 126.75315 * 0.04224 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 1 3.8571 0.4358 -1.2677 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3342 -0.1824 9 6 5.3943 -0.9856 0.2807 10 1 5.9386 -0.1789 -0.1878 11 6 5.9520 -1.6684 1.3529 12 7 5.2885 -2.6512 1.9242 13 14 7.6441 -1.1924 1.9851 14 1 7.5052 -0.1550 3.0384 15 1 8.3145 -2.3890 2.5542 16 1 8.4578 -0.6550 0.8652 17 7 2.0183 -0.6906 1.1961 18 6 2.1470 -0.0182 2.3571 19 8 1.8581 1.1583 2.4117 20 6 2.6488 -0.7289 3.5877 21 6 2.6998 0.2541 4.7591 22 6 3.2021 -0.4563 5.9895 23 6 2.4673 -1.1754 6.8700 24 7 3.3193 -1.6233 7.7990 25 7 4.5018 -1.2027 7.5170 26 7 4.4775 -0.4988 6.4397 27 1 5.2421 -0.0724 6.0220 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.7516 -1.7715 -1.2057 32 1 1.6054 -0.2616 -2.1369 33 1 3.6265 -0.6886 -3.4657 34 1 5.1508 -1.1477 -2.6701 35 1 3.7723 -2.2741 -2.6699 36 1 3.6647 -2.0584 0.2387 37 1 5.6784 -3.1285 2.6732 38 1 2.2490 -1.6318 1.1526 39 1 3.6479 -1.1214 3.3986 40 1 1.9760 -1.5507 3.8325 41 1 3.3724 1.0762 4.5145 42 1 1.7004 0.6462 4.9481 43 1 1.4031 -1.3543 6.8291 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135497158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:34 Heat of formation + Delta-G solvation = 52.484080 kcal Electronic energy + Delta-G solvation = -24775.806349 eV Core-core repulsion = 21279.055719 eV Total energy + Delta-G solvation = -3496.750629 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.13160 -39.39279 -36.95876 -34.46707 -33.95089 -32.96405 -32.35299 -30.83410 -29.45295 -28.56662 -26.39427 -24.81265 -23.75617 -22.78514 -21.73406 -20.83492 -20.28960 -19.47252 -18.07483 -17.28019 -16.57491 -15.99273 -15.67600 -15.11834 -14.93173 -14.26881 -14.08705 -13.93644 -13.72751 -13.45927 -13.05493 -12.80063 -12.64100 -12.19510 -12.01589 -11.93531 -11.78118 -11.69741 -11.53160 -11.16526 -10.97400 -10.94306 -10.82197 -10.61416 -10.43046 -10.42452 -10.33825 -9.98048 -9.78398 -9.34871 -9.07039 -8.93028 -8.40043 -7.05446 -5.91770 -3.17701 1.70996 2.68150 2.91044 3.26894 3.28409 3.38242 3.38923 3.80883 4.46222 4.62064 4.84308 5.04645 5.09765 5.28388 5.34136 5.40174 5.44746 5.47095 5.59180 5.62894 5.69139 5.83167 5.88631 5.94188 5.96681 6.09772 6.18684 6.19135 6.26032 6.31458 6.36483 6.47115 6.50758 6.55437 6.79279 6.97188 6.99247 7.15265 7.58863 8.15665 8.27481 8.58472 8.86552 9.38703 9.93947 10.29833 11.30046 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.006019 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.125350 B = 4650.891591 C = 6466.261044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 H 0.082 0.918 4 C -0.134 4.134 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.164 4.164 8 N -0.716 5.716 9 C -0.223 4.223 10 H 0.067 0.933 11 C -0.013 4.013 12 N -0.933 5.933 13 Si 0.896 3.104 14 H -0.294 1.294 15 H -0.292 1.292 16 H -0.283 1.283 17 N -0.696 5.696 18 C 0.531 3.469 19 O -0.569 6.569 20 C -0.141 4.141 21 C -0.031 4.031 22 C 0.007 3.993 23 C -0.054 4.054 24 N -0.271 5.271 25 N -0.089 5.089 26 N -0.386 5.386 27 H 0.449 0.551 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.378 0.622 37 H 0.254 0.746 38 H 0.405 0.595 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.782 3.742 -0.646 9.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.100 0.900 4 C -0.172 4.172 5 C 0.060 3.940 6 H 0.066 0.934 7 C -0.224 4.224 8 N -0.359 5.359 9 C -0.354 4.354 10 H 0.085 0.915 11 C -0.208 4.208 12 N -0.583 5.583 13 Si 0.728 3.272 14 H -0.221 1.221 15 H -0.219 1.219 16 H -0.209 1.209 17 N -0.348 5.348 18 C 0.319 3.681 19 O -0.450 6.450 20 C -0.182 4.182 21 C -0.071 4.071 22 C -0.128 4.128 23 C -0.211 4.211 24 N -0.138 5.138 25 N -0.069 5.069 26 N -0.106 5.106 27 H 0.294 0.706 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.213 0.787 37 H 0.064 0.936 38 H 0.243 0.757 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.033 3.979 0.631 8.986 hybrid contribution 0.977 0.089 -0.805 1.269 sum -7.056 4.068 -0.174 8.146 Atomic orbital electron populations 1.22202 0.96349 1.01588 1.01886 1.20787 0.92435 0.97664 0.84695 0.90018 1.22204 0.97708 1.00641 0.96680 1.20286 0.89779 0.95825 0.88159 0.93449 1.22421 1.01504 1.00386 0.98094 1.42468 1.18647 1.39990 1.34829 1.19219 0.93273 1.12807 1.10143 0.91499 1.24576 0.98225 0.98772 0.99228 1.69586 1.37923 1.24590 1.26197 0.86348 0.84948 0.77099 0.78768 1.22149 1.21859 1.20913 1.45965 1.65665 1.14460 1.08677 1.20260 0.76272 0.86805 0.84813 1.90614 1.52191 1.16316 1.85840 1.21687 1.06102 0.98563 0.91846 1.19885 1.02866 0.96698 0.87658 1.22409 0.84797 1.04807 1.00760 1.23344 1.01534 1.02246 0.94005 1.75033 0.95753 1.19354 1.23621 1.78242 1.17750 1.09343 1.01550 1.45140 1.09993 1.36339 1.19141 0.70589 0.92240 0.92840 0.92417 0.91747 0.90882 0.94561 0.92911 0.93586 0.78663 0.93641 0.75692 0.86085 0.89247 0.89801 0.88506 0.79432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.48 37.16 0.35 -1.65 16 2 C 0.15 2.21 2.57 -67.93 -0.17 2.04 16 3 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.13 -1.87 4.43 -26.73 -0.12 -1.98 16 5 C 0.17 2.95 2.89 -67.93 -0.20 2.76 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 7 C -0.16 -2.68 9.49 37.16 0.35 -2.33 16 8 N -0.72 -15.09 3.84 -53.42 -0.21 -15.29 16 9 C -0.22 -5.45 9.93 -15.06 -0.15 -5.60 16 10 H 0.07 1.68 7.83 -52.48 -0.41 1.27 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 12 N -0.93 -23.73 12.78 55.49 0.71 -23.02 16 13 Si 0.90 20.65 29.55 -169.99 -5.02 15.62 16 14 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 N -0.70 -11.27 3.80 -53.81 -0.20 -11.47 16 18 C 0.53 9.18 7.79 -10.98 -0.09 9.09 16 19 O -0.57 -11.08 15.64 5.56 0.09 -10.99 16 20 C -0.14 -2.18 5.68 -27.88 -0.16 -2.34 16 21 C -0.03 -0.42 5.07 -27.88 -0.14 -0.56 16 22 C 0.01 0.09 6.56 -82.08 -0.54 -0.45 16 23 C -0.05 -0.75 11.99 -17.73 -0.21 -0.96 16 24 N -0.27 -4.49 12.41 30.23 0.38 -4.11 16 25 N -0.09 -1.47 13.38 60.35 0.81 -0.66 16 26 N -0.39 -5.53 6.98 33.54 0.23 -5.30 16 27 H 0.45 5.45 8.96 -190.41 -1.71 3.74 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.38 8.17 5.70 -40.82 -0.23 7.94 16 37 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 38 H 0.41 6.75 6.51 -40.82 -0.27 6.48 16 39 H 0.12 2.25 7.86 -51.93 -0.41 1.85 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 42 H 0.10 1.19 8.10 -51.93 -0.42 0.77 16 43 H 0.19 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -28.80 359.47 -7.01 -35.81 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -8.04 Total: 16.41 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.17 Total: -2.41 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 1.72 Total: -59.86 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.80 -7.01 -35.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135497158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.291 kcal (2) G-P(sol) polarization free energy of solvation -28.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds