Wall clock time and date at job start Fri Apr 10 2020 17:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47405 * 240.00131 * 2 1 3 5 5 C 1.52995 * 109.47310 * 175.00008 * 4 2 1 6 6 H 1.09001 * 109.47703 * 304.99972 * 5 4 2 7 7 C 1.53000 * 109.47178 * 184.99667 * 5 4 2 8 8 N 1.46507 * 109.47293 * 65.00006 * 5 4 2 9 9 C 1.36927 * 120.00350 * 204.99908 * 8 5 4 10 10 H 1.08007 * 120.00261 * 0.02562 * 9 8 5 11 11 C 1.38816 * 120.00261 * 179.97438 * 9 8 5 12 12 N 1.31617 * 119.99778 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00132 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47229 * 90.00213 * 13 11 9 15 15 H 1.48499 * 109.46950 * 210.00077 * 13 11 9 16 16 H 1.48497 * 109.47294 * 330.00115 * 13 11 9 17 17 N 1.46496 * 109.47084 * 120.00037 * 2 1 3 18 18 C 1.34779 * 120.00054 * 274.99976 * 17 2 1 19 19 O 1.21273 * 120.00093 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99767 * 179.97438 * 18 17 2 21 21 C 1.53000 * 109.46735 * 180.02562 * 20 18 17 22 22 C 1.50703 * 109.46912 * 180.02562 * 21 20 18 23 23 C 1.35356 * 126.90859 * 274.68560 * 22 21 20 24 24 N 1.33773 * 106.49105 * 179.90761 * 23 22 21 25 25 N 1.28636 * 108.88820 * 0.36428 * 24 23 22 26 26 N 1.28715 * 110.17860 * 359.77361 * 25 24 23 27 27 H 0.96994 * 125.86810 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.46647 * 59.99604 * 1 2 3 29 29 H 1.08999 * 109.47646 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47281 * 300.00108 * 1 2 3 31 31 H 1.09004 * 109.47238 * 295.00344 * 4 2 1 32 32 H 1.09001 * 109.46658 * 54.99996 * 4 2 1 33 33 H 1.09003 * 109.47020 * 60.00433 * 7 5 4 34 34 H 1.08999 * 109.47439 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.47523 * 300.00143 * 7 5 4 36 36 H 0.97003 * 119.99336 * 24.99474 * 8 5 4 37 37 H 0.96998 * 120.00214 * 179.97438 * 12 11 9 38 38 H 0.97005 * 120.00266 * 94.99798 * 17 2 1 39 39 H 1.09001 * 109.46797 * 60.00350 * 20 18 17 40 40 H 1.08992 * 109.47518 * 300.00347 * 20 18 17 41 41 H 1.09002 * 109.47398 * 300.00410 * 21 20 18 42 42 H 1.09001 * 109.47194 * 60.00591 * 21 20 18 43 43 H 1.07990 * 126.75315 * 0.04224 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 1 3.8571 0.4358 -1.2677 7 6 4.0645 -1.2250 -2.6240 8 7 4.1537 -1.3342 -0.1824 9 6 5.3943 -0.9856 0.2807 10 1 5.9386 -0.1789 -0.1878 11 6 5.9520 -1.6684 1.3529 12 7 5.2885 -2.6512 1.9242 13 14 7.6441 -1.1924 1.9851 14 1 7.5052 -0.1550 3.0384 15 1 8.3145 -2.3890 2.5542 16 1 8.4578 -0.6550 0.8652 17 7 2.0183 -0.6906 1.1961 18 6 2.1470 -0.0182 2.3571 19 8 1.8581 1.1583 2.4117 20 6 2.6488 -0.7289 3.5877 21 6 2.6998 0.2541 4.7591 22 6 3.2021 -0.4563 5.9895 23 6 2.4673 -1.1754 6.8700 24 7 3.3193 -1.6233 7.7990 25 7 4.5018 -1.2027 7.5170 26 7 4.4775 -0.4988 6.4397 27 1 5.2421 -0.0724 6.0220 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.7516 -1.7715 -1.2057 32 1 1.6054 -0.2616 -2.1369 33 1 3.6265 -0.6886 -3.4657 34 1 5.1508 -1.1477 -2.6701 35 1 3.7723 -2.2741 -2.6699 36 1 3.6647 -2.0584 0.2387 37 1 5.6784 -3.1285 2.6732 38 1 2.2490 -1.6318 1.1526 39 1 3.6479 -1.1214 3.3986 40 1 1.9760 -1.5507 3.8325 41 1 3.3724 1.0762 4.5145 42 1 1.7004 0.6462 4.9481 43 1 1.4031 -1.3543 6.8291 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135497158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:33 Heat of formation + Delta-G solvation = 33.659630 kcal Electronic energy + Delta-G solvation = -24776.622638 eV Core-core repulsion = 21279.055719 eV Total energy + Delta-G solvation = -3497.566919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.28933 -40.72439 -38.34661 -35.87985 -35.24189 -34.14590 -33.98081 -32.17571 -30.74574 -30.06380 -27.57139 -26.00819 -25.55591 -23.95976 -22.90117 -22.05696 -21.63657 -20.83810 -19.23732 -19.07698 -17.87197 -17.25458 -16.90819 -16.61468 -16.38536 -15.59427 -15.46704 -15.36208 -15.13892 -14.67328 -14.27114 -14.21482 -13.94433 -13.53751 -13.31396 -13.25591 -13.04736 -12.88224 -12.78230 -12.71774 -12.57427 -12.30331 -12.21183 -12.15292 -11.79643 -11.67377 -11.60283 -11.58581 -11.37804 -10.87282 -10.69343 -10.11144 -9.73694 -8.81584 -7.85435 -5.07523 0.55820 1.40843 1.48745 1.51456 1.53677 1.83379 1.92585 2.55821 2.60068 3.47347 3.50128 3.71548 3.86291 4.02154 4.04371 4.10861 4.21947 4.30527 4.36860 4.44078 4.55074 4.61104 4.73335 4.77797 4.86839 4.90255 4.97277 5.05914 5.11810 5.15960 5.18452 5.20134 5.23503 5.42295 5.44540 5.60653 5.64632 5.87637 5.89721 6.35630 6.82952 7.41396 7.45507 7.52640 8.18964 8.46829 9.34449 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.006019 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.125350 B = 4650.891591 C = 6466.261044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.056 0.944 4 C -0.121 4.121 5 C 0.162 3.838 6 H 0.030 0.970 7 C -0.155 4.155 8 N -0.719 5.719 9 C -0.222 4.222 10 H 0.055 0.945 11 C -0.049 4.049 12 N -0.941 5.941 13 Si 0.935 3.065 14 H -0.288 1.288 15 H -0.304 1.304 16 H -0.287 1.287 17 N -0.694 5.694 18 C 0.525 3.475 19 O -0.594 6.594 20 C -0.133 4.133 21 C -0.019 4.019 22 C 0.009 3.991 23 C -0.050 4.050 24 N -0.296 5.296 25 N -0.114 5.114 26 N -0.382 5.382 27 H 0.455 0.545 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.046 0.954 36 H 0.376 0.624 37 H 0.246 0.754 38 H 0.404 0.596 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.527 3.801 -1.744 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 H 0.075 0.925 4 C -0.159 4.159 5 C 0.054 3.946 6 H 0.048 0.952 7 C -0.215 4.215 8 N -0.362 5.362 9 C -0.354 4.354 10 H 0.073 0.927 11 C -0.243 4.243 12 N -0.592 5.592 13 Si 0.768 3.232 14 H -0.216 1.216 15 H -0.231 1.231 16 H -0.213 1.213 17 N -0.344 5.344 18 C 0.313 3.687 19 O -0.477 6.477 20 C -0.173 4.173 21 C -0.059 4.059 22 C -0.126 4.126 23 C -0.208 4.208 24 N -0.163 5.163 25 N -0.094 5.094 26 N -0.104 5.104 27 H 0.302 0.698 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.211 0.789 37 H 0.055 0.945 38 H 0.241 0.759 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.133 0.867 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -9.774 4.048 -0.498 10.591 hybrid contribution 1.509 0.114 -0.576 1.619 sum -8.266 4.161 -1.074 9.316 Atomic orbital electron populations 1.22095 0.93957 1.02586 1.02300 1.20895 0.94229 0.96210 0.84527 0.92550 1.22116 0.94744 1.01498 0.97518 1.20482 0.92221 0.94408 0.87475 0.95182 1.22290 1.00006 1.00795 0.98427 1.42519 1.17671 1.40139 1.35823 1.19304 0.94421 1.11976 1.09718 0.92659 1.24935 1.00034 0.99413 0.99928 1.69666 1.38243 1.25107 1.26219 0.85729 0.82888 0.76381 0.78252 1.21560 1.23102 1.21261 1.46042 1.65101 1.14310 1.08964 1.20563 0.76015 0.86574 0.85557 1.90596 1.53510 1.17298 1.86292 1.21590 1.04538 0.99341 0.91866 1.19796 1.03632 0.95808 0.86684 1.22515 0.84564 1.04756 1.00783 1.23929 1.02809 1.01115 0.92898 1.75006 0.96226 1.20234 1.24805 1.78211 1.18146 1.10475 1.02578 1.45210 1.10626 1.35794 1.18730 0.69815 0.90010 0.91482 0.93851 0.90720 0.87680 0.91359 0.95362 0.93451 0.78938 0.94508 0.75881 0.89111 0.87333 0.90631 0.86708 0.76213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.48 71.98 0.68 -2.64 16 2 C 0.15 4.07 2.57 44.99 0.12 4.18 16 3 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 4 C -0.12 -3.02 4.43 30.59 0.14 -2.89 16 5 C 0.16 5.45 2.89 44.99 0.13 5.58 16 6 H 0.03 1.12 8.08 -2.39 -0.02 1.10 16 7 C -0.16 -4.76 9.49 71.98 0.68 -4.08 16 8 N -0.72 -29.92 3.84 -322.93 -1.24 -31.16 16 9 C -0.22 -10.88 9.93 84.04 0.83 -10.04 16 10 H 0.06 2.81 7.83 -2.91 -0.02 2.78 16 11 C -0.05 -2.48 5.50 84.86 0.47 -2.02 16 12 N -0.94 -48.03 12.78 21.65 0.28 -47.75 16 13 Si 0.93 42.67 29.55 68.60 2.03 44.70 16 14 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 15 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 17 N -0.69 -21.78 3.80 -442.54 -1.68 -23.46 16 18 C 0.53 17.83 7.79 87.66 0.68 18.51 16 19 O -0.59 -22.87 15.64 -3.01 -0.05 -22.92 16 20 C -0.13 -4.00 5.68 29.85 0.17 -3.83 16 21 C -0.02 -0.50 5.07 29.85 0.15 -0.35 16 22 C 0.01 0.23 6.56 41.36 0.27 0.51 16 23 C -0.05 -1.31 11.99 83.73 1.00 -0.30 16 24 N -0.30 -9.64 12.41 -58.26 -0.72 -10.36 16 25 N -0.11 -3.77 13.38 37.02 0.50 -3.28 16 26 N -0.38 -10.85 6.98 -47.78 -0.33 -11.18 16 27 H 0.45 11.10 8.96 -219.97 -1.97 9.13 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.38 15.99 5.70 -92.71 -0.53 15.46 16 37 H 0.25 12.74 8.31 -92.71 -0.77 11.97 16 38 H 0.40 13.04 6.51 -92.70 -0.60 12.44 16 39 H 0.09 3.39 7.86 -2.39 -0.02 3.37 16 40 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.08 2.09 8.10 -2.39 -0.02 2.07 16 42 H 0.11 2.59 8.10 -2.39 -0.02 2.57 16 43 H 0.22 4.01 8.06 -2.92 -0.02 3.98 16 Total: -1.00 -61.90 359.47 2.03 -59.87 By element: Atomic # 1 Polarization: 44.98 SS G_CDS: -2.07 Total: 42.91 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.33 Total: 2.63 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -3.21 Total: -127.19 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -61.90 2.03 -59.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135497158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.528 kcal (2) G-P(sol) polarization free energy of solvation -61.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds