Wall clock time and date at job start Fri Apr 10 2020 17:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47173 * 2 1 4 4 C 1.53000 * 109.47049 * 239.99906 * 2 1 3 5 5 C 1.53003 * 109.47314 * 175.00445 * 4 2 1 6 6 H 1.09000 * 109.46317 * 304.99944 * 5 4 2 7 7 C 1.53001 * 109.47243 * 185.00047 * 5 4 2 8 8 N 1.46494 * 109.47057 * 64.99789 * 5 4 2 9 9 C 1.34784 * 119.99635 * 205.00313 * 8 5 4 10 10 O 1.21279 * 119.99925 * 359.97438 * 9 8 5 11 11 C 1.50700 * 119.99961 * 180.02562 * 9 8 5 12 12 C 1.52992 * 109.47257 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 9 14 14 C 1.35351 * 126.91197 * 274.68128 * 13 12 11 15 15 N 1.33772 * 106.49808 * 179.90630 * 14 13 12 16 16 N 1.28634 * 108.88257 * 0.37019 * 15 14 13 17 17 N 1.28715 * 110.17754 * 359.76463 * 16 15 14 18 18 H 0.97006 * 125.86441 * 180.02562 * 17 16 15 19 19 N 1.46496 * 109.46995 * 120.00028 * 2 1 3 20 20 C 1.36939 * 120.00003 * 274.99992 * 19 2 1 21 21 H 1.07998 * 119.99702 * 359.97438 * 20 19 2 22 22 C 1.38810 * 119.99923 * 180.02562 * 20 19 2 23 23 N 1.31614 * 120.00511 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99684 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47175 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47242 * 119.99642 * 24 22 20 27 27 H 1.48501 * 109.46805 * 239.99502 * 24 22 20 28 28 H 1.08997 * 109.47143 * 300.00119 * 1 2 3 29 29 H 1.09004 * 109.46826 * 60.00101 * 1 2 3 30 30 H 1.08997 * 109.47173 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47324 * 54.99831 * 4 2 1 32 32 H 1.09010 * 109.46715 * 295.00278 * 4 2 1 33 33 H 1.08991 * 109.46933 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.46920 * 299.99865 * 7 5 4 35 35 H 1.08996 * 109.46997 * 59.99455 * 7 5 4 36 36 H 0.96995 * 120.00292 * 25.27746 * 8 5 4 37 37 H 1.09004 * 109.46932 * 300.00223 * 11 9 8 38 38 H 1.08997 * 109.47392 * 59.99562 * 11 9 8 39 39 H 1.09004 * 109.47330 * 299.99977 * 12 11 9 40 40 H 1.09005 * 109.47124 * 59.99773 * 12 11 9 41 41 H 1.08003 * 126.75099 * 0.04651 * 14 13 12 42 42 H 0.97002 * 120.00455 * 94.99672 * 19 2 1 43 43 H 0.97001 * 120.00718 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0645 -1.2252 -2.6240 8 7 4.1536 -1.3343 -0.1824 9 6 5.3748 -0.9912 0.2733 10 8 5.9863 -0.0860 -0.2535 11 6 5.9807 -1.7331 1.4367 12 6 7.3597 -1.1498 1.7511 13 6 7.9654 -1.8913 2.9149 14 6 7.7677 -1.6405 4.2302 15 7 8.4961 -2.5393 4.9019 16 7 9.1105 -3.2914 4.0584 17 7 8.8209 -2.9378 2.8551 18 1 9.1579 -3.3510 2.0447 19 7 2.0183 -0.6906 1.1961 20 6 2.1491 -0.0075 2.3757 21 1 1.8926 1.0405 2.4241 22 6 2.6123 -0.6617 3.5090 23 7 2.9253 -1.9387 3.4500 24 14 2.7899 0.2701 5.1183 25 1 2.3751 1.6822 4.9211 26 1 1.9297 -0.3592 6.1522 27 1 4.2069 0.2280 5.5607 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -0.2618 -2.1370 32 1 1.7515 -1.7716 -1.2055 33 1 5.1507 -1.1479 -2.6701 34 1 3.7722 -2.2743 -2.6699 35 1 3.6264 -0.6888 -3.4657 36 1 3.6664 -2.0612 0.2361 37 1 5.3355 -1.6301 2.3091 38 1 6.0816 -2.7881 1.1821 39 1 8.0052 -1.2524 0.8788 40 1 7.2584 -0.0948 2.0060 41 1 7.1428 -0.8683 4.6540 42 1 2.2490 -1.6318 1.1527 43 1 3.2486 -2.3961 4.2420 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135497159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:36 Heat of formation + Delta-G solvation = 53.914591 kcal Electronic energy + Delta-G solvation = -24768.535074 eV Core-core repulsion = 21271.846476 eV Total energy + Delta-G solvation = -3496.688598 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.13759 -39.39011 -36.94009 -34.45058 -33.94990 -32.98446 -32.30485 -30.82030 -29.43804 -28.52677 -26.38513 -24.80942 -23.69553 -22.80836 -21.73559 -20.83286 -20.27153 -19.46290 -18.08548 -17.22142 -16.57710 -15.99701 -15.66995 -15.12569 -14.87060 -14.16728 -14.10733 -13.89051 -13.72230 -13.34271 -13.06481 -12.82190 -12.62906 -12.17729 -12.01285 -11.91490 -11.75371 -11.68293 -11.55374 -11.10873 -10.97120 -10.87323 -10.76474 -10.58853 -10.42476 -10.40266 -10.25109 -9.92846 -9.72180 -9.34395 -9.00214 -8.91464 -8.39264 -6.99258 -5.84891 -3.11205 1.67832 2.72370 2.84088 3.27924 3.39703 3.48298 3.49778 3.80944 4.54932 4.61903 4.86568 5.05276 5.14119 5.29458 5.35485 5.43668 5.48874 5.50906 5.58915 5.62863 5.66714 5.84105 5.87782 5.94012 5.97462 6.11069 6.19816 6.20699 6.31273 6.35757 6.38201 6.50250 6.53577 6.57999 6.82160 6.93515 7.01961 7.15622 7.66798 8.16028 8.34225 8.58102 8.86530 9.46139 9.99813 10.35700 11.37172 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.006005 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.121046 B = 4661.278875 C = 6498.677658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.048 0.952 4 C -0.134 4.134 5 C 0.149 3.851 6 H 0.082 0.918 7 C -0.162 4.162 8 N -0.696 5.696 9 C 0.531 3.469 10 O -0.569 6.569 11 C -0.141 4.141 12 C -0.029 4.029 13 C 0.002 3.998 14 C -0.040 4.040 15 N -0.266 5.266 16 N -0.093 5.093 17 N -0.393 5.393 18 H 0.444 0.556 19 N -0.716 5.716 20 C -0.226 4.226 21 H 0.067 0.933 22 C -0.010 4.010 23 N -0.933 5.933 24 Si 0.896 3.104 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.289 1.289 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.405 0.595 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.190 0.810 42 H 0.378 0.622 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -1.372 -9.989 11.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.066 0.934 4 C -0.172 4.172 5 C 0.044 3.956 6 H 0.101 0.899 7 C -0.220 4.220 8 N -0.347 5.347 9 C 0.318 3.682 10 O -0.450 6.450 11 C -0.182 4.182 12 C -0.069 4.069 13 C -0.132 4.132 14 C -0.197 4.197 15 N -0.134 5.134 16 N -0.073 5.073 17 N -0.114 5.114 18 H 0.289 0.711 19 N -0.360 5.360 20 C -0.358 4.358 21 H 0.085 0.915 22 C -0.205 4.205 23 N -0.583 5.583 24 Si 0.728 3.272 25 H -0.209 1.209 26 H -0.221 1.221 27 H -0.216 1.216 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.243 0.757 37 H 0.146 0.854 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.208 0.792 42 H 0.213 0.787 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.926 -1.537 -9.188 11.041 hybrid contribution -0.723 0.247 0.060 0.766 sum 5.204 -1.291 -9.128 10.586 Atomic orbital electron populations 1.22426 0.99360 1.00707 0.99922 1.20276 0.91639 0.95712 0.86400 0.93437 1.22206 0.94056 1.01581 0.99379 1.20789 0.92505 0.97306 0.84987 0.89949 1.22203 1.01639 1.00779 0.97398 1.45956 1.17902 1.37355 1.33508 1.20259 0.81323 0.83237 0.83341 1.90615 1.62364 1.31693 1.60290 1.21694 0.96632 0.99546 1.00301 1.19874 0.94961 0.99560 0.92513 1.22383 0.98166 0.93737 0.98870 1.23481 1.03737 1.02563 0.89948 1.75063 1.08437 1.04308 1.25566 1.78215 1.21279 1.21396 0.86443 1.45058 1.32734 1.23888 1.09691 0.71073 1.42463 1.77969 1.10142 1.05382 1.19246 1.35487 0.93795 0.87253 0.91470 1.24566 1.02512 0.95928 0.97516 1.69581 1.51649 1.08285 1.28785 0.86279 0.77569 0.78857 0.84500 1.20892 1.22118 1.21601 0.92877 0.94611 0.93633 0.90921 0.91806 0.92512 0.92901 0.92213 0.75708 0.85351 0.90079 0.90308 0.88053 0.79249 0.78738 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.17 2.98 2.89 -67.93 -0.20 2.79 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 C -0.13 -1.87 4.43 -26.73 -0.12 -1.99 16 5 C 0.15 2.21 2.57 -67.93 -0.17 2.04 16 6 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 7 C -0.16 -2.00 9.48 37.16 0.35 -1.65 16 8 N -0.70 -11.28 3.79 -53.81 -0.20 -11.48 16 9 C 0.53 9.18 7.79 -10.98 -0.09 9.09 16 10 O -0.57 -11.07 15.64 5.56 0.09 -10.99 16 11 C -0.14 -2.18 5.68 -27.89 -0.16 -2.34 16 12 C -0.03 -0.39 5.07 -27.89 -0.14 -0.53 16 13 C 0.00 0.03 6.56 -82.09 -0.54 -0.51 16 14 C -0.04 -0.65 11.99 -17.74 -0.21 -0.86 16 15 N -0.27 -4.66 12.41 30.24 0.38 -4.29 16 16 N -0.09 -1.46 13.38 60.35 0.81 -0.65 16 17 N -0.39 -4.86 6.98 33.54 0.23 -4.62 16 18 H 0.44 3.63 8.96 -190.40 -1.71 1.93 16 19 N -0.72 -15.21 3.84 -53.43 -0.21 -15.42 16 20 C -0.23 -5.60 9.93 -15.06 -0.15 -5.75 16 21 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -23.93 12.78 55.49 0.71 -23.22 16 24 Si 0.90 21.03 29.55 -169.99 -5.02 16.01 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.41 6.76 6.53 -40.82 -0.27 6.49 16 37 H 0.13 2.42 7.86 -51.93 -0.41 2.01 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.10 1.46 8.10 -51.93 -0.42 1.04 16 41 H 0.19 2.90 8.06 -52.48 -0.42 2.48 16 42 H 0.38 8.21 5.71 -40.82 -0.23 7.97 16 43 H 0.25 6.58 8.31 -40.82 -0.34 6.25 16 LS Contribution 359.49 15.07 5.42 5.42 Total: -1.00 -29.27 359.49 -7.01 -36.28 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: -8.04 Total: 15.36 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.17 Total: -2.40 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 1.72 Total: -59.68 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.27 -7.01 -36.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135497159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.199 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds