Wall clock time and date at job start Fri Apr 10 2020 17:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47173 * 2 1 4 4 C 1.53000 * 109.47049 * 239.99906 * 2 1 3 5 5 C 1.53003 * 109.47314 * 175.00445 * 4 2 1 6 6 H 1.09000 * 109.46317 * 304.99944 * 5 4 2 7 7 C 1.53001 * 109.47243 * 185.00047 * 5 4 2 8 8 N 1.46494 * 109.47057 * 64.99789 * 5 4 2 9 9 C 1.34784 * 119.99635 * 205.00313 * 8 5 4 10 10 O 1.21279 * 119.99925 * 359.97438 * 9 8 5 11 11 C 1.50700 * 119.99961 * 180.02562 * 9 8 5 12 12 C 1.52992 * 109.47257 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 9 14 14 C 1.35351 * 126.91197 * 274.68128 * 13 12 11 15 15 N 1.33772 * 106.49808 * 179.90630 * 14 13 12 16 16 N 1.28634 * 108.88257 * 0.37019 * 15 14 13 17 17 N 1.28715 * 110.17754 * 359.76463 * 16 15 14 18 18 H 0.97006 * 125.86441 * 180.02562 * 17 16 15 19 19 N 1.46496 * 109.46995 * 120.00028 * 2 1 3 20 20 C 1.36939 * 120.00003 * 274.99992 * 19 2 1 21 21 H 1.07998 * 119.99702 * 359.97438 * 20 19 2 22 22 C 1.38810 * 119.99923 * 180.02562 * 20 19 2 23 23 N 1.31614 * 120.00511 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99684 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47175 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47242 * 119.99642 * 24 22 20 27 27 H 1.48501 * 109.46805 * 239.99502 * 24 22 20 28 28 H 1.08997 * 109.47143 * 300.00119 * 1 2 3 29 29 H 1.09004 * 109.46826 * 60.00101 * 1 2 3 30 30 H 1.08997 * 109.47173 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47324 * 54.99831 * 4 2 1 32 32 H 1.09010 * 109.46715 * 295.00278 * 4 2 1 33 33 H 1.08991 * 109.46933 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.46920 * 299.99865 * 7 5 4 35 35 H 1.08996 * 109.46997 * 59.99455 * 7 5 4 36 36 H 0.96995 * 120.00292 * 25.27746 * 8 5 4 37 37 H 1.09004 * 109.46932 * 300.00223 * 11 9 8 38 38 H 1.08997 * 109.47392 * 59.99562 * 11 9 8 39 39 H 1.09004 * 109.47330 * 299.99977 * 12 11 9 40 40 H 1.09005 * 109.47124 * 59.99773 * 12 11 9 41 41 H 1.08003 * 126.75099 * 0.04651 * 14 13 12 42 42 H 0.97002 * 120.00455 * 94.99672 * 19 2 1 43 43 H 0.97001 * 120.00718 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0645 -1.2252 -2.6240 8 7 4.1536 -1.3343 -0.1824 9 6 5.3748 -0.9912 0.2733 10 8 5.9863 -0.0860 -0.2535 11 6 5.9807 -1.7331 1.4367 12 6 7.3597 -1.1498 1.7511 13 6 7.9654 -1.8913 2.9149 14 6 7.7677 -1.6405 4.2302 15 7 8.4961 -2.5393 4.9019 16 7 9.1105 -3.2914 4.0584 17 7 8.8209 -2.9378 2.8551 18 1 9.1579 -3.3510 2.0447 19 7 2.0183 -0.6906 1.1961 20 6 2.1491 -0.0075 2.3757 21 1 1.8926 1.0405 2.4241 22 6 2.6123 -0.6617 3.5090 23 7 2.9253 -1.9387 3.4500 24 14 2.7899 0.2701 5.1183 25 1 2.3751 1.6822 4.9211 26 1 1.9297 -0.3592 6.1522 27 1 4.2069 0.2280 5.5607 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6054 -0.2618 -2.1370 32 1 1.7515 -1.7716 -1.2055 33 1 5.1507 -1.1479 -2.6701 34 1 3.7722 -2.2743 -2.6699 35 1 3.6264 -0.6888 -3.4657 36 1 3.6664 -2.0612 0.2361 37 1 5.3355 -1.6301 2.3091 38 1 6.0816 -2.7881 1.1821 39 1 8.0052 -1.2524 0.8788 40 1 7.2584 -0.0948 2.0060 41 1 7.1428 -0.8683 4.6540 42 1 2.2490 -1.6318 1.1527 43 1 3.2486 -2.3961 4.2420 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135497159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:36 Heat of formation + Delta-G solvation = 34.544099 kcal Electronic energy + Delta-G solvation = -24769.375041 eV Core-core repulsion = 21271.846476 eV Total energy + Delta-G solvation = -3497.528565 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.175 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.31944 -40.72462 -38.33401 -35.86939 -35.26270 -34.18283 -33.95133 -32.17280 -30.74908 -30.05145 -27.56571 -26.01975 -25.51773 -24.01144 -22.92784 -22.06122 -21.62632 -20.83626 -19.24536 -19.04325 -17.87846 -17.26131 -16.90642 -16.56883 -16.40569 -15.56521 -15.43260 -15.33032 -15.26357 -14.57121 -14.30952 -14.23398 -13.94303 -13.53363 -13.29965 -13.22914 -13.05562 -12.86527 -12.77717 -12.75691 -12.52826 -12.30371 -12.21686 -12.07059 -11.78971 -11.66582 -11.60203 -11.55596 -11.36017 -10.83471 -10.69872 -10.14005 -9.73351 -8.77622 -7.81300 -5.03291 0.52341 1.46976 1.48572 1.55351 1.58310 1.81974 1.92522 2.56959 2.64816 3.48507 3.52661 3.69978 3.86301 3.95766 4.05630 4.11619 4.22170 4.28103 4.37963 4.44573 4.45787 4.61636 4.72947 4.76365 4.87239 4.90978 4.97413 5.02740 5.12304 5.14549 5.17403 5.20161 5.23751 5.41640 5.46003 5.64744 5.67315 5.88400 5.99466 6.40630 6.82828 7.37782 7.50629 7.52519 8.22663 8.50481 9.39039 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.006005 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.121046 B = 4661.278875 C = 6498.677658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.030 0.970 4 C -0.120 4.120 5 C 0.146 3.854 6 H 0.057 0.943 7 C -0.151 4.151 8 N -0.693 5.693 9 C 0.525 3.475 10 O -0.594 6.594 11 C -0.133 4.133 12 C -0.018 4.018 13 C 0.017 3.983 14 C -0.061 4.061 15 N -0.299 5.299 16 N -0.103 5.103 17 N -0.368 5.368 18 H 0.464 0.536 19 N -0.719 5.719 20 C -0.223 4.223 21 H 0.055 0.945 22 C -0.045 4.045 23 N -0.941 5.941 24 Si 0.933 3.067 25 H -0.284 1.284 26 H -0.305 1.305 27 H -0.290 1.290 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.404 0.596 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.188 0.812 42 H 0.376 0.624 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.554 -1.946 -12.253 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.048 0.952 4 C -0.159 4.159 5 C 0.041 3.959 6 H 0.075 0.925 7 C -0.209 4.209 8 N -0.344 5.344 9 C 0.313 3.687 10 O -0.476 6.476 11 C -0.173 4.173 12 C -0.058 4.058 13 C -0.118 4.118 14 C -0.219 4.219 15 N -0.165 5.165 16 N -0.083 5.083 17 N -0.092 5.092 18 H 0.313 0.687 19 N -0.362 5.362 20 C -0.356 4.356 21 H 0.073 0.927 22 C -0.239 4.239 23 N -0.591 5.591 24 Si 0.766 3.234 25 H -0.210 1.210 26 H -0.233 1.233 27 H -0.217 1.217 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.241 0.759 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.205 0.795 42 H 0.210 0.790 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.724 -2.117 -11.495 13.014 hybrid contribution -0.721 0.476 0.685 1.103 sum 5.003 -1.641 -10.810 12.024 Atomic orbital electron populations 1.22293 0.98026 1.00893 1.00316 1.20474 0.92472 0.94971 0.86661 0.95211 1.22116 0.93287 1.01932 0.98526 1.20898 0.93114 0.96034 0.85833 0.92503 1.22092 1.00754 1.01697 0.96362 1.46031 1.17524 1.37096 1.33734 1.20546 0.81584 0.83012 0.83551 1.90599 1.63048 1.32733 1.61266 1.21585 0.96784 1.00796 0.98179 1.19777 0.94349 0.98616 0.93061 1.22269 0.97774 0.93656 0.98096 1.23635 1.04272 1.02905 0.91054 1.75035 1.09554 1.05247 1.26706 1.78134 1.21441 1.21419 0.87292 1.45012 1.31492 1.22934 1.09785 0.68653 1.42507 1.78091 1.09994 1.05570 1.19310 1.34313 0.93383 0.88590 0.92716 1.24900 1.03536 0.96549 0.98960 1.69646 1.52477 1.08577 1.28449 0.85690 0.77060 0.78039 0.82629 1.20966 1.23305 1.21689 0.95340 0.91389 0.93472 0.87703 0.90746 0.93883 0.91516 0.89998 0.75890 0.88551 0.87964 0.87926 0.89157 0.79480 0.78970 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 9.49 71.98 0.68 -4.12 16 2 C 0.16 5.49 2.89 44.99 0.13 5.62 16 3 H 0.03 1.12 8.08 -2.39 -0.02 1.10 16 4 C -0.12 -3.03 4.43 30.60 0.14 -2.89 16 5 C 0.15 4.06 2.57 44.99 0.12 4.18 16 6 H 0.06 1.89 7.58 -2.39 -0.02 1.88 16 7 C -0.15 -3.29 9.48 71.98 0.68 -2.60 16 8 N -0.69 -21.76 3.79 -442.53 -1.68 -23.44 16 9 C 0.53 17.80 7.79 87.66 0.68 18.49 16 10 O -0.59 -22.78 15.64 -3.03 -0.05 -22.83 16 11 C -0.13 -4.00 5.68 29.85 0.17 -3.83 16 12 C -0.02 -0.47 5.07 29.85 0.15 -0.32 16 13 C 0.02 0.45 6.56 41.36 0.27 0.72 16 14 C -0.06 -1.98 11.99 83.73 1.00 -0.97 16 15 N -0.30 -10.46 12.41 -58.25 -0.72 -11.18 16 16 N -0.10 -3.13 13.38 37.02 0.50 -2.63 16 17 N -0.37 -8.48 6.98 -47.79 -0.33 -8.82 16 18 H 0.46 6.41 8.96 -219.95 -1.97 4.44 16 19 N -0.72 -30.17 3.84 -322.95 -1.24 -31.41 16 20 C -0.22 -11.10 9.93 84.03 0.83 -10.27 16 21 H 0.05 2.82 7.83 -2.91 -0.02 2.80 16 22 C -0.05 -2.32 5.50 84.86 0.47 -1.85 16 23 N -0.94 -48.49 12.78 21.65 0.28 -48.21 16 24 Si 0.93 43.73 29.55 68.60 2.03 45.75 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 27 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 28 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.40 13.02 6.53 -92.71 -0.61 12.42 16 37 H 0.10 3.65 7.86 -2.38 -0.02 3.63 16 38 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.10 2.19 8.10 -2.38 -0.02 2.17 16 40 H 0.09 2.58 8.10 -2.38 -0.02 2.56 16 41 H 0.19 5.94 8.06 -2.91 -0.02 5.92 16 42 H 0.38 16.06 5.71 -92.71 -0.53 15.54 16 43 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 Total: -1.00 -63.34 359.49 2.03 -61.31 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -2.07 Total: 39.31 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.33 Total: 2.15 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -3.20 Total: -125.69 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -63.34 2.03 -61.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135497159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.853 kcal (2) G-P(sol) polarization free energy of solvation -63.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds