Wall clock time and date at job start Fri Apr 10 2020 17:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99972 * 2 1 4 4 C 1.34774 * 120.00221 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99962 * 359.97438 * 4 2 1 6 6 C 1.50699 * 120.00439 * 180.02562 * 4 2 1 7 7 C 1.50694 * 109.47319 * 179.97438 * 6 4 2 8 8 O 1.21281 * 119.99974 * 0.02562 * 7 6 4 9 9 N 1.34778 * 119.99973 * 179.97438 * 7 6 4 10 10 C 1.47892 * 134.34311 * 180.02562 * 9 7 6 11 11 C 1.52375 * 85.73257 * 156.54358 * 10 9 7 12 12 C 1.48161 * 134.44944 * 359.88843 * 9 7 6 13 13 C 1.53654 * 116.39618 * 141.28147 * 11 10 9 14 14 C 1.54605 * 102.73195 * 162.91767 * 13 11 10 15 15 N 1.47144 * 107.36262 * 339.24918 * 14 13 11 16 16 C 1.36937 * 125.58305 * 179.09493 * 15 14 13 17 17 H 1.08002 * 119.99549 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00398 * 359.97438 * 16 15 14 19 19 N 1.31627 * 119.99797 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00157 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47132 * 59.99893 * 20 18 16 22 22 H 1.48496 * 109.47128 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47063 * 300.00077 * 20 18 16 24 24 C 1.47719 * 108.82637 * 359.07314 * 15 14 13 25 25 H 1.09002 * 109.47315 * 269.99568 * 1 2 3 26 26 H 1.09003 * 109.47249 * 29.99944 * 1 2 3 27 27 H 1.09000 * 109.47154 * 150.00124 * 1 2 3 28 28 H 1.08994 * 109.47501 * 270.00261 * 3 2 1 29 29 H 1.09002 * 109.47086 * 30.00374 * 3 2 1 30 30 H 1.09003 * 109.46832 * 149.99854 * 3 2 1 31 31 H 1.09001 * 109.47047 * 59.99269 * 6 4 2 32 32 H 1.09003 * 109.46510 * 300.00025 * 6 4 2 33 33 H 1.09002 * 113.85436 * 42.31390 * 10 9 7 34 34 H 1.08998 * 113.84884 * 270.77567 * 10 9 7 35 35 H 1.08997 * 113.74300 * 89.28005 * 12 9 7 36 36 H 1.09006 * 114.04347 * 317.66282 * 12 9 7 37 37 H 1.08994 * 110.76150 * 281.23220 * 13 11 10 38 38 H 1.09004 * 110.75900 * 44.61270 * 13 11 10 39 39 H 1.08996 * 109.86482 * 98.69071 * 14 13 11 40 40 H 1.08997 * 109.86858 * 219.66814 * 14 13 11 41 41 H 0.96999 * 119.99806 * 180.02562 * 19 18 16 42 42 H 1.09004 * 110.40181 * 263.66202 * 24 15 14 43 43 H 1.09001 * 110.40025 * 141.25086 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 0.0001 7 6 4.1482 -2.5880 -0.0001 8 8 3.3601 -3.5098 -0.0010 9 7 5.4733 -2.8342 -0.0001 10 6 6.2963 -4.0630 -0.0007 11 6 7.3914 -3.1927 -0.6051 12 6 6.6866 -1.9840 -0.0022 13 6 8.8239 -3.4612 -0.1184 14 6 9.6863 -2.7721 -1.2007 15 7 8.8512 -2.6319 -2.4041 16 6 9.2419 -2.0534 -3.5822 17 1 8.5524 -1.9988 -4.4117 18 6 10.5240 -1.5371 -3.7103 19 7 11.3641 -1.6032 -2.6992 20 14 11.0571 -0.7486 -5.3176 21 1 10.1736 0.4062 -5.6194 22 1 12.4607 -0.2790 -5.1970 23 1 10.9606 -1.7455 -6.4140 24 6 7.5226 -3.2180 -2.1332 25 1 -0.3634 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 2.3791 1.5835 -1.0276 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1384 0.5139 31 1 4.0089 -0.6539 0.8905 32 1 4.0095 -0.6528 -0.8895 33 1 5.9292 -4.8391 -0.6722 34 1 6.5303 -4.4372 0.9959 35 1 7.0392 -1.7200 0.9949 36 1 6.6278 -1.1277 -0.6742 37 1 8.9921 -3.0058 0.8575 38 1 9.0268 -4.5317 -0.0865 39 1 10.0018 -1.7887 -0.8523 40 1 10.5603 -3.3842 -1.4232 41 1 12.2600 -1.2421 -2.7886 42 1 7.4771 -4.2429 -2.5015 43 1 6.7400 -2.6135 -2.5918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148402329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:46 Heat of formation + Delta-G solvation = -14.789811 kcal Electronic energy + Delta-G solvation = -24222.554095 eV Core-core repulsion = 20690.593500 eV Total energy + Delta-G solvation = -3531.960595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.84201 -40.90570 -39.13524 -37.17075 -36.43700 -34.08907 -32.46684 -31.15770 -29.73036 -28.58286 -27.49913 -27.27484 -26.53641 -25.13682 -22.09873 -21.12752 -19.98459 -19.43609 -18.80058 -18.44935 -17.35827 -17.30990 -17.00206 -16.75287 -16.37999 -16.31034 -15.63055 -15.51021 -15.14628 -14.35710 -14.18679 -14.09111 -13.93244 -13.69040 -13.58642 -13.46423 -13.38719 -13.16964 -12.94743 -12.86341 -12.79346 -12.71813 -12.38289 -12.03922 -11.90175 -11.69704 -11.62222 -11.25665 -11.04461 -10.64159 -10.43468 -9.66536 -9.64581 -8.84627 -7.80791 -5.15516 1.49305 1.51426 1.55839 1.57746 1.61264 1.70135 2.21774 2.52379 3.27510 3.35039 3.44953 3.56594 3.70957 3.79758 4.15858 4.20180 4.24208 4.29500 4.39331 4.42555 4.51046 4.52119 4.63244 4.69257 4.75534 4.81165 4.82419 4.89824 4.92242 4.99172 5.02199 5.13740 5.16268 5.26998 5.49798 5.53092 5.76666 5.86432 6.25128 6.30009 6.73452 7.10918 7.16071 7.28020 7.82025 8.46024 9.28658 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018764 B = 0.003571 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.887583 B = 7839.093269 C = 8773.694948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.625 5.625 3 C 0.067 3.933 4 C 0.503 3.497 5 O -0.557 6.557 6 C -0.148 4.148 7 C 0.526 3.474 8 O -0.563 6.563 9 N -0.644 5.644 10 C 0.127 3.873 11 C -0.100 4.100 12 C 0.131 3.869 13 C -0.112 4.112 14 C 0.185 3.815 15 N -0.624 5.624 16 C -0.243 4.243 17 H 0.076 0.924 18 C -0.060 4.060 19 N -0.947 5.947 20 Si 0.973 3.027 21 H -0.275 1.275 22 H -0.294 1.294 23 H -0.283 1.283 24 C 0.159 3.841 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.020 0.980 40 H 0.002 0.998 41 H 0.247 0.753 42 H 0.017 0.983 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.157 8.060 10.147 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.359 5.359 3 C -0.075 4.075 4 C 0.290 3.710 5 O -0.434 6.434 6 C -0.190 4.190 7 C 0.315 3.685 8 O -0.441 6.441 9 N -0.380 5.380 10 C 0.005 3.995 11 C -0.101 4.101 12 C 0.010 3.990 13 C -0.151 4.151 14 C 0.060 3.940 15 N -0.350 5.350 16 C -0.372 4.372 17 H 0.094 0.906 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.802 3.198 21 H -0.201 1.201 22 H -0.220 1.220 23 H -0.210 1.210 24 C 0.034 3.966 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.175 0.825 32 H 0.162 0.838 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.020 0.980 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.966 7.179 10.054 19.406 hybrid contribution 0.608 0.153 -1.191 1.346 sum -14.358 7.332 8.863 18.397 Atomic orbital electron populations 1.21715 0.78640 1.03306 1.02279 1.47936 1.07755 1.06687 1.73570 1.22168 0.98126 0.83709 1.03450 1.20547 0.90288 0.83589 0.76569 1.90827 1.70602 1.32553 1.49464 1.21587 0.92813 0.95290 1.09264 1.20281 0.80455 0.91632 0.76125 1.90819 1.54805 1.47684 1.50742 1.50351 1.03434 1.11397 1.72845 1.23005 0.85758 0.89134 1.01642 1.22273 0.94796 0.97409 0.95644 1.23218 0.79017 0.94586 1.02192 1.22522 0.92334 1.01176 0.99057 1.20998 0.91372 0.96794 0.84831 1.44829 1.10158 1.68516 1.11532 1.19343 0.96931 1.30213 0.90711 0.90596 1.25536 0.96565 1.02363 1.00839 1.70158 1.06296 1.51816 1.31282 0.85235 0.76805 0.78433 0.79337 1.20118 1.22003 1.20983 1.21115 0.87249 0.95572 0.92658 0.92170 0.88116 0.93222 0.91313 0.88679 0.89194 0.82463 0.83825 0.91372 0.87015 0.86170 0.89439 0.88357 0.90701 0.96127 0.97965 0.94385 0.96571 0.94660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.44 127.77 1.33 2.64 16 2 N -0.62 -11.07 3.27 -871.89 -2.85 -13.92 16 3 C 0.07 0.53 10.24 127.77 1.31 1.84 16 4 C 0.50 13.25 7.67 87.66 0.67 13.92 16 5 O -0.56 -21.49 13.76 20.41 0.28 -21.21 16 6 C -0.15 -3.02 4.49 29.10 0.13 -2.89 16 7 C 0.53 16.11 8.05 87.65 0.71 16.82 16 8 O -0.56 -23.62 14.90 20.41 0.30 -23.31 16 9 N -0.64 -17.26 3.63 -859.08 -3.12 -20.38 16 10 C 0.13 3.35 8.20 85.91 0.70 4.05 16 11 C -0.10 -2.91 0.99 -52.18 -0.05 -2.97 16 12 C 0.13 3.04 7.93 85.85 0.68 3.72 16 13 C -0.11 -3.44 6.36 31.36 0.20 -3.24 16 14 C 0.18 8.35 5.39 86.80 0.47 8.82 16 15 N -0.62 -30.36 3.41 -693.34 -2.36 -32.72 16 16 C -0.24 -13.19 10.28 84.03 0.86 -12.33 16 17 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 18 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16 19 N -0.95 -54.59 10.30 21.65 0.22 -54.37 16 20 Si 0.97 44.42 29.55 68.60 2.03 46.45 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 24 C 0.16 6.22 6.63 86.28 0.57 6.79 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.10 0.90 8.07 -2.39 -0.02 0.88 16 27 H 0.05 1.06 7.42 -2.39 -0.02 1.04 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 0.37 8.07 -2.39 -0.02 0.35 16 30 H 0.09 0.45 6.44 -2.39 -0.02 0.43 16 31 H 0.16 1.92 7.40 -2.39 -0.02 1.90 16 32 H 0.14 2.27 8.11 -2.39 -0.02 2.25 16 33 H 0.07 1.98 8.12 -2.39 -0.02 1.97 16 34 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.12 2.05 8.04 -2.39 -0.02 2.03 16 36 H 0.09 2.07 8.12 -2.38 -0.02 2.06 16 37 H 0.10 2.40 7.99 -2.39 -0.02 2.38 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 39 H 0.02 1.02 7.38 -2.39 -0.02 1.01 16 40 H 0.00 0.11 7.49 -2.39 -0.02 0.09 16 41 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 42 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.04 1.39 8.07 -2.39 -0.02 1.37 16 Total: -1.00 -83.39 349.89 3.54 -79.85 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 0.99 Total: 5.25 kcal Atomic # 6 Polarization: 26.31 SS G_CDS: 8.05 Total: 34.37 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -8.11 Total: -121.39 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: 0.58 Total: -44.52 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -83.39 3.54 -79.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148402329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.064 kcal (2) G-P(sol) polarization free energy of solvation -83.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds