Wall clock time and date at job start Fri Apr 10 2020 17:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21283 * 119.99950 * 2 1 4 4 N 1.34769 * 120.00405 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00342 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47201 * 179.97438 * 5 4 2 7 7 C 1.50708 * 109.46895 * 180.02562 * 6 5 4 8 8 C 1.29824 * 118.55374 * 95.00501 * 7 6 5 9 9 C 1.50142 * 123.28229 * 180.08961 * 8 7 6 10 10 N 1.46834 * 110.27541 * 342.94558 * 9 8 7 11 11 C 1.46907 * 110.99922 * 174.31717 * 10 9 8 12 12 C 1.50703 * 109.46802 * 293.95027 * 11 10 9 13 13 O 1.21291 * 120.00040 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00006 * 179.97438 * 12 11 10 15 15 C 1.37096 * 120.00102 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00016 * 0.02562 * 15 14 12 17 17 C 1.38959 * 119.99945 * 179.97438 * 15 14 12 18 18 N 1.31401 * 119.99651 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99710 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.46992 * 90.00055 * 19 17 15 21 21 H 1.48498 * 109.46995 * 209.99518 * 19 17 15 22 22 H 1.48492 * 109.47524 * 329.99977 * 19 17 15 23 23 C 1.47236 * 110.20798 * 50.92658 * 10 9 8 24 24 C 1.50303 * 118.55010 * 274.73150 * 7 6 5 25 25 H 1.08998 * 109.46983 * 240.00178 * 1 2 3 26 26 H 1.09001 * 109.47119 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46785 * 120.00256 * 1 2 3 28 28 H 0.96998 * 120.00204 * 359.97438 * 4 2 1 29 29 H 1.09007 * 109.47042 * 60.00097 * 5 4 2 30 30 H 1.08998 * 109.46892 * 299.99855 * 5 4 2 31 31 H 1.08998 * 109.47193 * 60.00133 * 6 5 4 32 32 H 1.08998 * 109.47211 * 299.99821 * 6 5 4 33 33 H 1.08003 * 118.35576 * 0.10650 * 8 7 6 34 34 H 1.09003 * 109.33162 * 103.19384 * 9 8 7 35 35 H 1.09004 * 109.33102 * 222.85981 * 9 8 7 36 36 H 1.08995 * 109.47331 * 53.94947 * 11 10 9 37 37 H 1.09001 * 109.47358 * 173.95433 * 11 10 9 38 38 H 0.97004 * 120.00108 * 0.02562 * 14 12 11 39 39 H 0.97008 * 119.99974 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.63673 * 50.88927 * 23 10 9 41 41 H 1.09002 * 109.63921 * 171.29273 * 23 10 9 42 42 H 1.09005 * 109.43619 * 283.85988 * 24 7 6 43 43 H 1.09001 * 109.43345 * 43.71293 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1559 -2.6096 0.0023 7 6 5.6630 -2.6095 0.0035 8 6 6.2826 -2.7083 1.1400 9 6 7.7788 -2.7170 1.2647 10 7 8.3961 -3.0074 -0.0356 11 6 9.8585 -2.8874 0.0374 12 6 10.2321 -1.4510 0.2988 13 8 9.3655 -0.6102 0.4136 14 7 11.5292 -1.1010 0.4061 15 6 11.8691 0.2056 0.6444 16 1 11.0975 0.9544 0.7466 17 6 13.2064 0.5664 0.7556 18 7 13.5322 1.8189 0.9835 19 14 14.5409 -0.7290 0.5809 20 1 14.9449 -0.8344 -0.8443 21 1 15.7166 -0.3422 1.4013 22 1 14.0221 -2.0401 1.0466 23 6 7.8446 -2.1172 -1.0706 24 6 6.3824 -2.5012 -1.3118 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6960 -2.0072 0.0013 29 1 4.0089 -0.6530 0.8912 30 1 4.0095 -0.6535 -0.8889 31 1 3.7930 -3.1240 -0.8875 32 1 3.7923 -3.1228 0.8924 33 1 5.6923 -2.7886 2.0408 34 1 8.1174 -1.7420 1.6153 35 1 8.0767 -3.4819 1.9819 36 1 10.2345 -3.5136 0.8463 37 1 10.2971 -3.2109 -0.9066 38 1 12.2222 -1.7735 0.3146 39 1 14.4658 2.0707 1.0615 40 1 7.9004 -1.0827 -0.7317 41 1 8.4135 -2.2315 -1.9932 42 1 6.3399 -3.4601 -1.8284 43 1 5.9035 -1.7381 -1.9253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158996600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:50 Heat of formation + Delta-G solvation = -53.323143 kcal Electronic energy + Delta-G solvation = -23472.585282 eV Core-core repulsion = 19938.953756 eV Total energy + Delta-G solvation = -3533.631526 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.85476 -39.52604 -37.78006 -35.75505 -34.22935 -33.54376 -31.76919 -30.97823 -30.55978 -29.22172 -26.91340 -24.67433 -23.44386 -23.03265 -21.49798 -20.79415 -19.47770 -18.47905 -17.35003 -16.99701 -16.32204 -15.96677 -15.91930 -15.43039 -15.13415 -14.88556 -14.34067 -14.12340 -13.96753 -13.74691 -13.56324 -13.02695 -12.93682 -12.78808 -12.61287 -12.38209 -12.28168 -12.07426 -11.95868 -11.77893 -11.32803 -11.25063 -10.93188 -10.65160 -10.60442 -10.30787 -10.04550 -10.02556 -9.59483 -9.34348 -9.27564 -8.59808 -8.20761 -7.50656 -6.36471 -3.87763 2.32014 2.45133 2.99488 3.03915 3.06144 3.12414 3.63852 4.05846 4.29976 4.54291 4.63925 4.75841 4.85908 4.88739 5.00616 5.03268 5.14477 5.20122 5.39549 5.46670 5.50374 5.56938 5.66360 5.76004 5.80022 5.87342 5.88988 5.93125 6.01330 6.07685 6.19218 6.25437 6.35020 6.60750 6.72633 7.06401 7.26907 7.33607 7.39094 7.52048 8.02692 8.10176 8.52476 8.89326 9.36853 9.75190 10.76322 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.002827 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.065170 B = 9902.331785 C =10695.866263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.505 3.495 3 O -0.543 6.543 4 N -0.733 5.733 5 C 0.120 3.880 6 C -0.090 4.090 7 C -0.126 4.126 8 C -0.133 4.133 9 C 0.065 3.935 10 N -0.508 5.508 11 C 0.036 3.964 12 C 0.413 3.587 13 O -0.575 6.575 14 N -0.583 5.583 15 C -0.308 4.308 16 H 0.119 0.881 17 C 0.042 3.958 18 N -0.878 5.878 19 Si 0.880 3.120 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.268 1.268 23 C 0.031 3.969 24 C -0.072 4.072 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.399 0.601 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.371 0.629 39 H 0.274 0.726 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.663 -14.142 -2.638 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.291 3.709 3 O -0.420 6.420 4 N -0.386 5.386 5 C -0.003 4.003 6 C -0.128 4.128 7 C -0.127 4.127 8 C -0.152 4.152 9 C -0.062 4.062 10 N -0.231 5.231 11 C -0.096 4.096 12 C 0.200 3.800 13 O -0.460 6.460 14 N -0.221 5.221 15 C -0.437 4.437 16 H 0.137 0.863 17 C -0.161 4.161 18 N -0.517 5.517 19 Si 0.707 3.293 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.096 4.096 24 C -0.110 4.110 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.233 0.767 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.204 0.796 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.743 -13.133 -2.654 23.860 hybrid contribution 1.269 -0.525 0.187 1.386 sum -18.473 -13.658 -2.467 23.106 Atomic orbital electron populations 1.21915 0.91773 1.05541 1.04089 1.20836 0.90614 0.83580 0.75837 1.90771 1.70875 1.31406 1.48933 1.46116 1.07784 1.08657 1.76027 1.21411 0.78679 0.97114 1.03105 1.20828 0.93752 0.95503 1.02673 1.20601 0.93370 1.03085 0.95680 1.22089 0.95830 1.00224 0.97035 1.21145 0.91350 1.02069 0.91621 1.62957 1.02722 1.51437 1.05963 1.22129 0.89722 0.94489 1.03249 1.21066 0.83240 0.91080 0.84657 1.90460 1.47645 1.52347 1.55516 1.42410 1.06144 1.09739 1.63820 1.19461 0.94109 0.83969 1.46158 0.86330 1.25086 0.97326 0.96371 0.97365 1.69626 1.18661 1.15955 1.47477 0.86658 0.82350 0.81262 0.79071 1.19542 1.20118 1.19390 1.22501 0.93637 0.98732 0.94740 1.20435 0.94907 1.01201 0.94411 0.89488 0.89002 0.89490 0.76701 0.91185 0.91152 0.90897 0.91091 0.87713 0.90035 0.90775 0.89242 0.89047 0.79589 0.91525 0.89498 0.91565 0.91116 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.32 36.00 0.37 -0.63 16 2 C 0.50 5.37 7.94 -10.99 -0.09 5.28 16 3 O -0.54 -8.83 17.09 5.56 0.09 -8.73 16 4 N -0.73 -6.28 5.56 -60.29 -0.33 -6.62 16 5 C 0.12 1.31 5.66 -4.04 -0.02 1.29 16 6 C -0.09 -0.83 5.38 -27.88 -0.15 -0.98 16 7 C -0.13 -1.58 5.15 -100.92 -0.52 -2.10 16 8 C -0.13 -1.82 9.50 -35.97 -0.34 -2.16 16 9 C 0.07 1.04 5.41 -5.28 -0.03 1.01 16 10 N -0.51 -8.19 4.93 -237.56 -1.17 -9.36 16 11 C 0.04 0.60 5.84 -4.97 -0.03 0.57 16 12 C 0.41 9.07 7.11 -10.98 -0.08 8.99 16 13 O -0.57 -14.58 11.22 5.55 0.06 -14.52 16 14 N -0.58 -13.66 5.09 -10.96 -0.06 -13.72 16 15 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 16 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 17 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 18 N -0.88 -25.61 13.96 55.50 0.77 -24.84 16 19 Si 0.88 19.24 27.74 -169.99 -4.71 14.52 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 23 C 0.03 0.52 4.91 -3.59 -0.02 0.50 16 24 C -0.07 -0.95 6.04 -28.03 -0.17 -1.12 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.40 1.99 8.47 -40.82 -0.35 1.64 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.07 0.56 7.85 -51.93 -0.41 0.16 16 33 H 0.10 1.23 7.81 -52.48 -0.41 0.82 16 34 H 0.08 1.60 5.79 -51.93 -0.30 1.30 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.30 8.12 -51.93 -0.42 0.88 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.09 1.77 5.52 -51.93 -0.29 1.49 16 41 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -34.81 349.68 -8.00 -42.81 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -6.61 Total: 12.26 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.32 Total: 2.92 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.79 Total: -54.53 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.16 Total: -23.25 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.81 -8.00 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158996600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.511 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds