Wall clock time and date at job start Fri Apr 10 2020 17:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21283 * 119.99950 * 2 1 4 4 N 1.34769 * 120.00405 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00342 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47201 * 179.97438 * 5 4 2 7 7 C 1.50708 * 109.46895 * 180.02562 * 6 5 4 8 8 C 1.29824 * 118.55374 * 95.00501 * 7 6 5 9 9 C 1.50142 * 123.28229 * 180.08961 * 8 7 6 10 10 N 1.46834 * 110.27541 * 342.94558 * 9 8 7 11 11 C 1.46907 * 110.99922 * 174.31717 * 10 9 8 12 12 C 1.50703 * 109.46802 * 293.95027 * 11 10 9 13 13 O 1.21291 * 120.00040 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00006 * 179.97438 * 12 11 10 15 15 C 1.37096 * 120.00102 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00016 * 0.02562 * 15 14 12 17 17 C 1.38959 * 119.99945 * 179.97438 * 15 14 12 18 18 N 1.31401 * 119.99651 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99710 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.46992 * 90.00055 * 19 17 15 21 21 H 1.48498 * 109.46995 * 209.99518 * 19 17 15 22 22 H 1.48492 * 109.47524 * 329.99977 * 19 17 15 23 23 C 1.47236 * 110.20798 * 50.92658 * 10 9 8 24 24 C 1.50303 * 118.55010 * 274.73150 * 7 6 5 25 25 H 1.08998 * 109.46983 * 240.00178 * 1 2 3 26 26 H 1.09001 * 109.47119 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46785 * 120.00256 * 1 2 3 28 28 H 0.96998 * 120.00204 * 359.97438 * 4 2 1 29 29 H 1.09007 * 109.47042 * 60.00097 * 5 4 2 30 30 H 1.08998 * 109.46892 * 299.99855 * 5 4 2 31 31 H 1.08998 * 109.47193 * 60.00133 * 6 5 4 32 32 H 1.08998 * 109.47211 * 299.99821 * 6 5 4 33 33 H 1.08003 * 118.35576 * 0.10650 * 8 7 6 34 34 H 1.09003 * 109.33162 * 103.19384 * 9 8 7 35 35 H 1.09004 * 109.33102 * 222.85981 * 9 8 7 36 36 H 1.08995 * 109.47331 * 53.94947 * 11 10 9 37 37 H 1.09001 * 109.47358 * 173.95433 * 11 10 9 38 38 H 0.97004 * 120.00108 * 0.02562 * 14 12 11 39 39 H 0.97008 * 119.99974 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.63673 * 50.88927 * 23 10 9 41 41 H 1.09002 * 109.63921 * 171.29273 * 23 10 9 42 42 H 1.09005 * 109.43619 * 283.85988 * 24 7 6 43 43 H 1.09001 * 109.43345 * 43.71293 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1559 -2.6096 0.0023 7 6 5.6630 -2.6095 0.0035 8 6 6.2826 -2.7083 1.1400 9 6 7.7788 -2.7170 1.2647 10 7 8.3961 -3.0074 -0.0356 11 6 9.8585 -2.8874 0.0374 12 6 10.2321 -1.4510 0.2988 13 8 9.3655 -0.6102 0.4136 14 7 11.5292 -1.1010 0.4061 15 6 11.8691 0.2056 0.6444 16 1 11.0975 0.9544 0.7466 17 6 13.2064 0.5664 0.7556 18 7 13.5322 1.8189 0.9835 19 14 14.5409 -0.7290 0.5809 20 1 14.9449 -0.8344 -0.8443 21 1 15.7166 -0.3422 1.4013 22 1 14.0221 -2.0401 1.0466 23 6 7.8446 -2.1172 -1.0706 24 6 6.3824 -2.5012 -1.3118 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6960 -2.0072 0.0013 29 1 4.0089 -0.6530 0.8912 30 1 4.0095 -0.6535 -0.8889 31 1 3.7930 -3.1240 -0.8875 32 1 3.7923 -3.1228 0.8924 33 1 5.6923 -2.7886 2.0408 34 1 8.1174 -1.7420 1.6153 35 1 8.0767 -3.4819 1.9819 36 1 10.2345 -3.5136 0.8463 37 1 10.2971 -3.2109 -0.9066 38 1 12.2222 -1.7735 0.3146 39 1 14.4658 2.0707 1.0615 40 1 7.9004 -1.0827 -0.7317 41 1 8.4135 -2.2315 -1.9932 42 1 6.3399 -3.4601 -1.8284 43 1 5.9035 -1.7381 -1.9253 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158996600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:49 Heat of formation + Delta-G solvation = -82.428996 kcal Electronic energy + Delta-G solvation = -23473.847407 eV Core-core repulsion = 19938.953756 eV Total energy + Delta-G solvation = -3534.893651 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.17964 -40.61556 -39.21929 -36.90192 -35.96265 -34.82344 -33.81684 -31.89145 -31.71759 -30.12219 -28.28106 -26.29707 -24.74011 -24.16345 -22.62701 -21.66336 -21.35865 -20.32619 -18.65690 -17.85365 -17.63169 -17.23438 -16.87652 -16.76330 -16.51998 -16.31293 -15.63986 -15.56117 -15.28435 -15.09980 -14.67595 -14.62761 -14.17984 -13.97720 -13.74971 -13.35803 -13.27511 -13.18896 -13.10124 -12.94779 -12.87574 -12.47308 -12.29173 -12.18784 -12.01855 -11.76145 -11.51983 -11.38011 -11.06496 -10.97855 -10.27953 -10.16222 -9.66821 -9.05295 -8.45568 -6.06428 1.27813 1.28537 1.33015 1.42454 1.63038 1.88592 2.20010 2.31535 2.93970 2.99670 3.11331 3.78001 3.85626 3.97884 4.10262 4.14412 4.18678 4.27885 4.37795 4.47142 4.53238 4.59581 4.61071 4.68150 4.70775 4.80082 4.85558 4.93013 4.99391 5.03030 5.11653 5.16016 5.34409 5.41827 5.48197 5.54130 5.90266 5.94849 6.01728 6.19030 6.54062 6.58221 6.84417 7.28420 7.34876 7.91780 8.72189 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.002827 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.065170 B = 9902.331785 C =10695.866263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.495 3.505 3 O -0.611 6.611 4 N -0.715 5.715 5 C 0.124 3.876 6 C -0.075 4.075 7 C -0.122 4.122 8 C -0.156 4.156 9 C 0.065 3.935 10 N -0.494 5.494 11 C 0.044 3.956 12 C 0.415 3.585 13 O -0.614 6.614 14 N -0.587 5.587 15 C -0.329 4.329 16 H 0.051 0.949 17 C -0.017 4.017 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.256 1.256 21 H -0.275 1.275 22 H -0.229 1.229 23 C 0.030 3.970 24 C -0.070 4.070 25 H 0.115 0.885 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.421 0.579 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.034 0.966 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.704 -19.038 -3.400 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.284 3.716 3 O -0.493 6.493 4 N -0.368 5.368 5 C 0.000 4.000 6 C -0.113 4.113 7 C -0.123 4.123 8 C -0.174 4.174 9 C -0.062 4.062 10 N -0.216 5.216 11 C -0.088 4.088 12 C 0.203 3.797 13 O -0.500 6.500 14 N -0.228 5.228 15 C -0.459 4.459 16 H 0.069 0.931 17 C -0.215 4.215 18 N -0.575 5.575 19 Si 0.786 3.214 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.152 1.152 23 C -0.098 4.098 24 C -0.107 4.107 25 H 0.133 0.867 26 H 0.102 0.898 27 H 0.134 0.866 28 H 0.259 0.741 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.142 0.858 34 H 0.052 0.948 35 H 0.112 0.888 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.226 0.774 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.843 -18.106 -3.420 27.820 hybrid contribution 1.434 1.078 0.407 1.840 sum -19.409 -17.028 -3.013 25.995 Atomic orbital electron populations 1.21917 0.87493 1.05954 1.06764 1.21824 0.92684 0.82842 0.74204 1.90747 1.72554 1.33853 1.52187 1.45951 1.06779 1.09423 1.74679 1.21184 0.80256 0.97985 1.00615 1.20752 0.91118 0.94266 1.05115 1.20897 0.95400 1.01065 0.94950 1.22165 0.94637 1.02124 0.98452 1.21129 0.93224 1.00124 0.91768 1.63065 1.02413 1.50251 1.05913 1.22352 0.90235 0.90241 1.06009 1.22379 0.82209 0.93326 0.81779 1.90492 1.48856 1.54555 1.56086 1.42243 1.07310 1.08250 1.65034 1.18993 0.93354 0.85182 1.48364 0.93079 1.26189 1.00032 0.99367 0.95961 1.69815 1.19731 1.19083 1.48873 0.85337 0.77418 0.78858 0.79738 1.18076 1.20023 1.15226 1.22445 0.96365 0.96155 0.94840 1.20449 0.92553 1.02474 0.95235 0.86696 0.89839 0.86573 0.74056 0.94191 0.93493 0.88218 0.88791 0.85829 0.94801 0.88839 0.86032 0.85884 0.77422 0.91114 0.94440 0.90965 0.88668 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 10.32 71.23 0.74 -0.75 16 2 C 0.50 10.24 7.94 87.66 0.70 10.93 16 3 O -0.61 -20.87 17.09 -3.04 -0.05 -20.93 16 4 N -0.71 -11.05 5.56 -463.06 -2.57 -13.62 16 5 C 0.12 2.66 5.66 86.38 0.49 3.15 16 6 C -0.08 -1.17 5.38 29.85 0.16 -1.01 16 7 C -0.12 -2.86 5.15 -15.40 -0.08 -2.94 16 8 C -0.16 -4.09 9.50 26.68 0.25 -3.84 16 9 C 0.07 2.06 5.41 85.39 0.46 2.52 16 10 N -0.49 -15.23 4.93 -905.50 -4.47 -19.69 16 11 C 0.04 1.34 5.84 85.56 0.50 1.84 16 12 C 0.42 18.58 7.11 87.66 0.62 19.20 16 13 O -0.61 -33.33 11.22 -3.06 -0.03 -33.37 16 14 N -0.59 -27.77 5.09 -306.98 -1.56 -29.33 16 15 C -0.33 -19.53 10.16 84.04 0.85 -18.68 16 16 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 17 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 18 N -0.93 -57.22 13.96 21.66 0.30 -56.92 16 19 Si 0.97 39.07 27.74 68.60 1.90 40.97 16 20 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 23 C 0.03 0.98 4.91 86.27 0.42 1.41 16 24 C -0.07 -1.73 6.04 29.75 0.18 -1.55 16 25 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 27 H 0.12 0.42 8.14 -2.39 -0.02 0.41 16 28 H 0.42 2.72 8.47 -92.71 -0.79 1.94 16 29 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.11 8.12 -2.39 -0.02 1.09 16 32 H 0.09 1.12 7.85 -2.39 -0.02 1.10 16 33 H 0.12 2.72 7.81 -2.91 -0.02 2.69 16 34 H 0.03 1.41 5.79 -2.39 -0.01 1.40 16 35 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 36 H 0.12 3.06 8.12 -2.39 -0.02 3.04 16 37 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.39 15.22 5.76 -92.71 -0.53 14.69 16 39 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 40 H 0.04 1.62 5.52 -2.39 -0.01 1.61 16 41 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 42 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -87.03 349.68 -1.07 -88.10 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.35 Total: 34.99 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.76 Total: 9.80 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -8.30 Total: -119.57 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -0.09 Total: -54.29 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.90 Total: 40.97 kcal Total: -87.03 -1.07 -88.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158996600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.668 kcal (2) G-P(sol) polarization free energy of solvation -87.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds