Wall clock time and date at job start Fri Apr 10 2020 17:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1 9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.47159 * 111.00230 * 189.05674 * 13 12 10 15 15 C 1.52900 * 108.49781 * 165.32173 * 14 13 12 16 16 C 1.50723 * 109.95140 * 50.44705 * 15 14 13 17 17 C 1.38916 * 118.45923 * 163.22763 * 16 15 14 18 18 F 1.35104 * 119.83245 * 359.59513 * 17 16 15 19 19 C 1.38211 * 120.32824 * 179.57280 * 17 16 15 20 20 C 1.38447 * 119.77748 * 0.02562 * 19 17 16 21 21 F 1.35092 * 120.07941 * 180.09079 * 20 19 17 22 22 C 1.38249 * 119.83789 * 0.09081 * 20 19 17 23 23 C 1.37820 * 121.66062 * 342.98746 * 16 15 14 24 24 C 1.46622 * 111.00516 * 66.04260 * 13 12 10 25 25 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 28 28 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 29 29 H 1.08996 * 109.62941 * 285.02295 * 14 13 12 30 30 H 1.08996 * 109.63321 * 45.61621 * 14 13 12 31 31 H 1.08993 * 109.39217 * 290.29589 * 15 14 13 32 32 H 1.09001 * 109.30533 * 170.53982 * 15 14 13 33 33 H 1.08006 * 120.10983 * 180.02562 * 19 17 16 34 34 H 1.08001 * 119.78967 * 179.97438 * 22 20 19 35 35 H 1.09006 * 109.26921 * 296.18274 * 24 13 12 36 36 H 1.09003 * 109.26679 * 55.64988 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0072 11 8 3.4473 -3.4211 -0.0072 12 6 5.5607 -2.3705 -0.0141 13 7 6.0504 -3.7555 -0.0194 14 6 7.5062 -3.8010 0.1902 15 6 7.9014 -5.2360 0.5402 16 6 7.3169 -6.1910 -0.4688 17 6 7.8362 -7.4775 -0.5408 18 9 8.8474 -7.8409 0.2782 19 6 7.3233 -8.3875 -1.4458 20 6 6.2871 -8.0137 -2.2844 21 9 5.7799 -8.8988 -3.1700 22 6 5.7728 -6.7324 -2.2134 23 6 6.2877 -5.8182 -1.3061 24 6 5.6959 -4.4335 -1.2701 25 1 -0.4850 0.8400 0.0004 26 1 3.8649 -0.3633 -0.0014 27 1 5.9200 -1.8545 -0.9044 28 1 5.9282 -1.8591 0.8755 29 1 8.0173 -3.4925 -0.7218 30 1 7.7793 -3.1358 1.0093 31 1 7.5250 -5.4831 1.5328 32 1 8.9879 -5.3225 0.5333 33 1 7.7294 -9.3869 -1.4985 34 1 4.9647 -6.4415 -2.8683 35 1 4.6108 -4.5041 -1.3460 36 1 6.0781 -3.8570 -2.1126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120236248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:07 Heat of formation + Delta-G solvation = -87.880529 kcal Electronic energy + Delta-G solvation = -23259.740580 eV Core-core repulsion = 19379.971261 eV Total energy + Delta-G solvation = -3879.769319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.14638 -49.08871 -40.13902 -38.49969 -36.64998 -34.03523 -32.74569 -31.90111 -31.59021 -29.05174 -27.81969 -25.09172 -23.87895 -23.03917 -22.49424 -20.03339 -19.43014 -18.37889 -17.94663 -17.35749 -16.34933 -16.19132 -15.93938 -15.80577 -15.44830 -15.25252 -15.01080 -14.58200 -14.36587 -14.23256 -14.08378 -13.34248 -13.23141 -12.91165 -12.77884 -12.41261 -12.31800 -12.22115 -11.95414 -11.56451 -11.41126 -11.21924 -11.07352 -10.87275 -10.63039 -10.01017 -9.59418 -9.00694 -8.69631 -8.63624 -8.23203 -8.05241 -6.34584 -3.86314 0.83790 0.87201 2.99504 3.03526 3.12570 3.19423 3.64988 3.69353 3.77453 4.06858 4.24207 4.35557 4.47844 4.69117 4.73732 4.84666 5.11797 5.16907 5.19120 5.31026 5.40571 5.47257 5.57848 5.62411 5.70671 5.72536 5.82036 5.85605 5.91562 5.94710 6.03068 6.32448 6.66103 7.02912 7.09824 7.54136 8.10427 8.55762 8.91318 9.38264 9.78068 10.78389 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.003491 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.219057 B = 8018.186664 C = 8826.561051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.450 3.550 11 O -0.560 6.560 12 C 0.042 3.958 13 N -0.510 5.510 14 C 0.050 3.950 15 C -0.071 4.071 16 C -0.114 4.114 17 C 0.125 3.875 18 F -0.132 7.132 19 C -0.198 4.198 20 C 0.126 3.874 21 F -0.133 7.133 22 C -0.157 4.157 23 C -0.006 4.006 24 C 0.083 3.917 25 H 0.274 0.726 26 H 0.370 0.630 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.127 0.873 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.655 -8.573 -2.881 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.138 0.862 9 N -0.228 5.228 10 C 0.236 3.764 11 O -0.442 6.442 12 C -0.089 4.089 13 N -0.234 5.234 14 C -0.078 4.078 15 C -0.109 4.109 16 C -0.115 4.115 17 C 0.106 3.894 18 F -0.111 7.111 19 C -0.218 4.218 20 C 0.106 3.894 21 F -0.112 7.112 22 C -0.177 4.177 23 C -0.006 4.006 24 C -0.044 4.044 25 H 0.084 0.916 26 H 0.203 0.797 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.145 0.855 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.814 -9.452 -2.480 20.318 hybrid contribution 1.006 1.495 -0.651 1.915 sum 18.819 -7.957 -3.131 20.671 Atomic orbital electron populations 1.69620 1.05662 1.27548 1.49149 1.25042 0.95482 0.97987 0.97588 0.86678 0.79817 0.84071 0.78860 1.19651 1.20158 1.19457 1.19430 0.79167 0.96648 1.48174 0.86220 1.42209 1.07564 1.06123 1.66920 1.19618 0.87999 0.84598 0.84227 1.90529 1.69305 1.30716 1.53607 1.21955 0.95757 0.89125 1.02044 1.61864 1.11508 1.15039 1.34970 1.22206 0.88170 0.96577 1.00864 1.20456 0.99798 0.92713 0.97887 1.19652 0.98150 0.93649 1.00032 1.17174 0.88075 0.92881 0.91280 1.91497 1.57164 1.91984 1.70413 1.20878 1.00199 1.01550 0.99144 1.17090 0.94627 0.87491 0.90177 1.91520 1.86042 1.67573 1.66034 1.21126 1.02734 0.91866 1.01955 1.19362 0.92542 0.96142 0.92581 1.21298 1.03853 0.89086 0.90166 0.91570 0.79691 0.93003 0.88713 0.94250 0.89703 0.89137 0.90080 0.83682 0.83744 0.85501 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.26 13.96 55.50 0.77 -24.48 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 18.81 27.74 -169.99 -4.71 14.10 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 7 C -0.31 -8.39 10.16 -14.93 -0.15 -8.54 16 8 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 9 N -0.59 -13.41 5.09 -10.96 -0.06 -13.47 16 10 C 0.45 9.65 7.53 -10.99 -0.08 9.57 16 11 O -0.56 -14.19 13.87 5.55 0.08 -14.12 16 12 C 0.04 0.65 5.44 -4.98 -0.03 0.63 16 13 N -0.51 -7.61 4.42 -237.65 -1.05 -8.66 16 14 C 0.05 0.56 5.57 -3.73 -0.02 0.53 16 15 C -0.07 -0.78 5.60 -27.92 -0.16 -0.94 16 16 C -0.11 -1.42 5.78 -104.51 -0.60 -2.03 16 17 C 0.13 1.49 7.23 -39.34 -0.28 1.21 16 18 F -0.13 -1.53 16.56 2.25 0.04 -1.49 16 19 C -0.20 -2.23 10.01 -39.51 -0.40 -2.62 16 20 C 0.13 1.52 7.30 -39.50 -0.29 1.23 16 21 F -0.13 -1.64 17.27 2.25 0.04 -1.60 16 22 C -0.16 -1.99 9.62 -39.40 -0.38 -2.37 16 23 C -0.01 -0.07 5.79 -104.64 -0.61 -0.68 16 24 C 0.08 1.23 4.83 -5.16 -0.02 1.20 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.37 7.36 5.76 -40.82 -0.24 7.12 16 27 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 28 H 0.09 1.25 7.91 -51.93 -0.41 0.84 16 29 H 0.04 0.40 8.05 -51.93 -0.42 -0.02 16 30 H 0.08 0.80 7.87 -51.93 -0.41 0.40 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.73 7.94 -51.93 -0.41 0.32 16 33 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 35 H 0.13 2.28 5.92 -51.93 -0.31 1.97 16 36 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 LS Contribution 309.55 15.07 4.66 4.66 Total: -1.00 -31.11 309.55 -7.20 -38.31 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -3.85 Total: 8.52 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.12 Total: -1.77 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.33 Total: -46.61 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.08 Total: -14.12 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.09 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.71 Total: 14.10 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.11 -7.20 -38.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120236248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.569 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds