Wall clock time and date at job start Fri Apr 10 2020 17:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1 9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.47159 * 111.00230 * 189.05674 * 13 12 10 15 15 C 1.52900 * 108.49781 * 165.32173 * 14 13 12 16 16 C 1.50723 * 109.95140 * 50.44705 * 15 14 13 17 17 C 1.38916 * 118.45923 * 163.22763 * 16 15 14 18 18 F 1.35104 * 119.83245 * 359.59513 * 17 16 15 19 19 C 1.38211 * 120.32824 * 179.57280 * 17 16 15 20 20 C 1.38447 * 119.77748 * 0.02562 * 19 17 16 21 21 F 1.35092 * 120.07941 * 180.09079 * 20 19 17 22 22 C 1.38249 * 119.83789 * 0.09081 * 20 19 17 23 23 C 1.37820 * 121.66062 * 342.98746 * 16 15 14 24 24 C 1.46622 * 111.00516 * 66.04260 * 13 12 10 25 25 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 28 28 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 29 29 H 1.08996 * 109.62941 * 285.02295 * 14 13 12 30 30 H 1.08996 * 109.63321 * 45.61621 * 14 13 12 31 31 H 1.08993 * 109.39217 * 290.29589 * 15 14 13 32 32 H 1.09001 * 109.30533 * 170.53982 * 15 14 13 33 33 H 1.08006 * 120.10983 * 180.02562 * 19 17 16 34 34 H 1.08001 * 119.78967 * 179.97438 * 22 20 19 35 35 H 1.09006 * 109.26921 * 296.18274 * 24 13 12 36 36 H 1.09003 * 109.26679 * 55.64988 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0072 11 8 3.4473 -3.4211 -0.0072 12 6 5.5607 -2.3705 -0.0141 13 7 6.0504 -3.7555 -0.0194 14 6 7.5062 -3.8010 0.1902 15 6 7.9014 -5.2360 0.5402 16 6 7.3169 -6.1910 -0.4688 17 6 7.8362 -7.4775 -0.5408 18 9 8.8474 -7.8409 0.2782 19 6 7.3233 -8.3875 -1.4458 20 6 6.2871 -8.0137 -2.2844 21 9 5.7799 -8.8988 -3.1700 22 6 5.7728 -6.7324 -2.2134 23 6 6.2877 -5.8182 -1.3061 24 6 5.6959 -4.4335 -1.2701 25 1 -0.4850 0.8400 0.0004 26 1 3.8649 -0.3633 -0.0014 27 1 5.9200 -1.8545 -0.9044 28 1 5.9282 -1.8591 0.8755 29 1 8.0173 -3.4925 -0.7218 30 1 7.7793 -3.1358 1.0093 31 1 7.5250 -5.4831 1.5328 32 1 8.9879 -5.3225 0.5333 33 1 7.7294 -9.3869 -1.4985 34 1 4.9647 -6.4415 -2.8683 35 1 4.6108 -4.5041 -1.3460 36 1 6.0781 -3.8570 -2.1126 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120236248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:06 Heat of formation + Delta-G solvation = -109.405284 kcal Electronic energy + Delta-G solvation = -23260.673963 eV Core-core repulsion = 19379.971261 eV Total energy + Delta-G solvation = -3880.702702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.108 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.06790 -50.04626 -41.21121 -40.06710 -37.81274 -35.93337 -33.81351 -33.68347 -32.77218 -30.01946 -29.13715 -26.67550 -25.06038 -24.17372 -23.45986 -21.27829 -20.96624 -20.19360 -18.91056 -18.37162 -17.76555 -17.20493 -16.95445 -16.82020 -16.74612 -16.46372 -16.33625 -15.79669 -15.50351 -15.47617 -15.29347 -14.92372 -14.42742 -14.35455 -13.97601 -13.90859 -13.44987 -13.24515 -13.16098 -12.97234 -12.54157 -12.39341 -12.33868 -12.16621 -11.95755 -11.76982 -11.44606 -10.35508 -10.21176 -9.97646 -9.59514 -9.22238 -8.38598 -5.99249 -0.11960 -0.08423 1.32506 1.37880 1.46903 1.99443 2.22836 2.25594 2.56863 2.76914 3.12351 3.18372 3.32428 3.49052 3.58898 3.82724 3.90677 4.15303 4.23585 4.28556 4.37324 4.45721 4.49873 4.55595 4.66615 4.70939 4.80881 4.88199 4.96161 5.02344 5.10938 5.29714 5.56013 5.70626 5.91700 6.00360 6.12301 6.62877 6.92076 7.43616 8.01299 8.79132 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.003491 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.219057 B = 8018.186664 C = 8826.561051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.016 4.016 3 Si 0.964 3.036 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.228 1.228 7 C -0.326 4.326 8 H 0.054 0.946 9 N -0.592 5.592 10 C 0.450 3.550 11 O -0.606 6.606 12 C 0.055 3.945 13 N -0.535 5.535 14 C 0.052 3.948 15 C -0.072 4.072 16 C -0.117 4.117 17 C 0.122 3.878 18 F -0.128 7.128 19 C -0.189 4.189 20 C 0.118 3.882 21 F -0.136 7.136 22 C -0.165 4.165 23 C -0.021 4.021 24 C 0.088 3.912 25 H 0.278 0.722 26 H 0.390 0.610 27 H 0.086 0.914 28 H 0.129 0.871 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.168 0.832 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.668 -7.079 -2.553 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.215 4.215 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.151 1.151 7 C -0.455 4.455 8 H 0.073 0.927 9 N -0.234 5.234 10 C 0.237 3.763 11 O -0.490 6.490 12 C -0.076 4.076 13 N -0.260 5.260 14 C -0.075 4.075 15 C -0.109 4.109 16 C -0.118 4.118 17 C 0.103 3.897 18 F -0.106 7.106 19 C -0.209 4.209 20 C 0.098 3.902 21 F -0.114 7.114 22 C -0.185 4.185 23 C -0.022 4.022 24 C -0.039 4.039 25 H 0.087 0.913 26 H 0.225 0.775 27 H 0.104 0.896 28 H 0.146 0.854 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.185 0.815 34 H 0.162 0.838 35 H 0.102 0.898 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.870 -7.976 -2.150 23.378 hybrid contribution -0.277 0.823 -0.757 1.152 sum 21.592 -7.153 -2.907 22.931 Atomic orbital electron populations 1.69812 1.08234 1.29174 1.50560 1.26119 0.96426 1.02756 0.96163 0.85370 0.79612 0.76688 0.79880 1.18218 1.20360 1.15094 1.18989 0.81574 0.94823 1.50113 0.92738 1.42030 1.05720 1.07642 1.67968 1.20951 0.90918 0.83287 0.81095 1.90527 1.71320 1.32558 1.54633 1.21902 0.90158 0.90377 1.05158 1.61777 1.14356 1.14746 1.35093 1.22327 0.85434 0.97128 1.02562 1.20550 1.01140 0.92317 0.96865 1.19871 0.97715 0.94368 0.99840 1.17171 0.88248 0.92813 0.91466 1.91509 1.56931 1.91919 1.70288 1.21095 0.99272 1.02439 0.98061 1.17130 0.95136 0.87277 0.90608 1.91513 1.86173 1.67553 1.66191 1.21224 1.02839 0.92320 1.02079 1.19301 0.93491 0.95749 0.93626 1.21064 1.01393 0.90377 0.91069 0.91251 0.77451 0.89632 0.85363 0.92533 0.87292 0.89707 0.87615 0.81482 0.83797 0.89815 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.10 13.96 21.66 0.30 -55.79 16 2 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 3 Si 0.96 37.75 27.74 68.60 1.90 39.65 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 5 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.23 -7.34 6.52 99.48 0.65 -6.69 16 7 C -0.33 -18.68 10.16 84.04 0.85 -17.82 16 8 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 9 N -0.59 -26.72 5.09 -306.98 -1.56 -28.28 16 10 C 0.45 19.23 7.53 87.66 0.66 19.89 16 11 O -0.61 -32.24 13.87 -3.07 -0.04 -32.28 16 12 C 0.05 1.51 5.44 85.56 0.47 1.97 16 13 N -0.54 -14.80 4.42 -905.78 -4.01 -18.81 16 14 C 0.05 0.96 5.57 86.22 0.48 1.44 16 15 C -0.07 -1.35 5.60 29.82 0.17 -1.18 16 16 C -0.12 -2.72 5.78 -19.79 -0.11 -2.83 16 17 C 0.12 2.67 7.23 22.43 0.16 2.83 16 18 F -0.13 -2.64 16.56 44.97 0.74 -1.90 16 19 C -0.19 -3.94 10.01 22.31 0.22 -3.72 16 20 C 0.12 2.79 7.30 22.32 0.16 2.95 16 21 F -0.14 -3.28 17.27 44.97 0.78 -2.50 16 22 C -0.17 -4.21 9.62 22.39 0.22 -4.00 16 23 C -0.02 -0.55 5.79 -19.87 -0.12 -0.67 16 24 C 0.09 2.57 4.83 85.59 0.41 2.99 16 25 H 0.28 15.24 8.31 -92.71 -0.77 14.46 16 26 H 0.39 14.34 5.76 -92.71 -0.53 13.81 16 27 H 0.09 1.85 8.07 -2.39 -0.02 1.83 16 28 H 0.13 2.74 7.91 -2.39 -0.02 2.73 16 29 H 0.06 0.88 8.05 -2.39 -0.02 0.86 16 30 H 0.11 1.49 7.87 -2.39 -0.02 1.47 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 1.48 7.94 -2.39 -0.02 1.46 16 33 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 35 H 0.08 3.18 5.92 -2.38 -0.01 3.16 16 36 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 Total: -1.00 -74.00 309.55 2.70 -71.30 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.54 Total: 27.19 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 4.04 Total: 1.43 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -5.27 Total: -102.88 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.04 Total: -32.28 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 1.52 Total: -4.40 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 1.90 Total: 39.65 kcal Total: -74.00 2.70 -71.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120236248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.107 kcal (2) G-P(sol) polarization free energy of solvation -73.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds